Gcaud2429.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2429.t1
Unique NameGcaud2429.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length170
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_295_length_31939_cov_4.445679contigNODE_295_length_31939_cov_4.445679:28339..29039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002600839.1
Preferred namePOLR1D
PFAMsRNA_pol_L_2
Max annot lvl33208|Metazoa
KEGG rclassRC02795
KEGG koko:K03020
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG ModuleM00181,M00182
GOsGO:0000428,GO:0001501,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0007275,GO:0008150,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0022613,GO:0030880,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0042254,GO:0043009,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0048513,GO:0048562,GO:0048568,GO:0048598,GO:0048701,GO:0048703,GO:0048704,GO:0048705,GO:0048706,GO:0048731,GO:0048856,GO:0051216,GO:0055029,GO:0061448,GO:0061695,GO:0070013,GO:0071840,GO:1902494,GO:1904888,GO:1990234
Evalue5.72e-24
EggNOG OGsCOG1761@1|root,KOG3438@2759|Eukaryota,3A631@33154|Opisthokonta,3BRJ8@33208|Metazoa,3D90W@33213|Bilateria,48FG9@7711|Chordata
DescriptionDNA-directed RNA polymerases I and III subunit
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2429Gcaud2429Gracilaria caudata M_176_S67 malegeneNODE_295_length_31939_cov_4.445679 28339..29039 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2429.t1Gcaud2429.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_295_length_31939_cov_4.445679 28339..29039 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2429.t1.stop1Gcaud2429.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_295_length_31939_cov_4.445679 28339..28341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2429.t1.CDS1Gcaud2429.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_295_length_31939_cov_4.445679 28339..28591 -
Gcaud2429.t1.CDS2Gcaud2429.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_295_length_31939_cov_4.445679 28679..28699 -
Gcaud2429.t1.CDS3Gcaud2429.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_295_length_31939_cov_4.445679 28804..29039 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2429.t1.exon1Gcaud2429.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_295_length_31939_cov_4.445679 28339..28591 -
Gcaud2429.t1.exon2Gcaud2429.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_295_length_31939_cov_4.445679 28679..28699 -
Gcaud2429.t1.exon3Gcaud2429.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_295_length_31939_cov_4.445679 28804..29039 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2429.t1.intron1Gcaud2429.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_295_length_31939_cov_4.445679 28592..28678 -
Gcaud2429.t1.intron2Gcaud2429.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_295_length_31939_cov_4.445679 28700..28803 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2429.t1.start1Gcaud2429.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_295_length_31939_cov_4.445679 29037..29039 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2429.t1 ID=Gcaud2429.t1|Name=Gcaud2429.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=170bp
MSSETSSEPKVEVIGTDQTNQTFVLRDEDHTLGNALRYVLVKNPDVKFCG
YSIPHPSENTMNIRVETYEKPAADLFKEADDREPQSQRQIGFLVVKNMKV
QICAVLLYTAVHEFERAMSDWRPIFIHTKPIHVHLLLRAEIPTELNLVYG
FGTTAAGHTKNSYHQTLAG*
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spliced messenger RNA

>Gcaud2429.t1 ID=Gcaud2429.t1|Name=Gcaud2429.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=510bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:28339..29039- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGCGAAACGAGTTCCGAACCCAAAGTAGAGGTTATCGGCACGGA
TCAAACAAATCAAACGTTTGTATTACGGGATGAAGATCATACTTTGGGAA
ATGCACTACGCTACGTCCTCGTGAAGAATCCCGACGTGAAATTCTGCGGA
TACAGTATTCCTCATCCAAGCGAAAACACGATGAATATCCGTGTAGAAAC
TTATGAGAAGCCGGCTGCTGATCTTTTTAAGGAAGCAGACGACAGGGAAC
CACAAAGCCAGAGACAGATTGGCTTCCTTGTGGTGAAAAACATGAAAGTA
CAAATTTGTGCCGTGCTGTTGTACACAGCTGTACATGAATTCGAGAGAGC
TATGTCCGATTGGAGACCAATTTTTATTCACACCAAGCCGATTCATGTTC
ATCTCCTCTTGAGAGCCGAAATTCCTACTGAGTTAAATCTCGTTTACGGA
TTTGGAACAACTGCAGCCGGACACACTAAGAATTCATATCATCAAACTTT
GGCTGGTTAG
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protein sequence of Gcaud2429.t1

>Gcaud2429.t1 ID=Gcaud2429.t1|Name=Gcaud2429.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=170bp
MSSETSSEPKVEVIGTDQTNQTFVLRDEDHTLGNALRYVLVKNPDVKFCG
YSIPHPSENTMNIRVETYEKPAADLFKEADDREPQSQRQIGFLVVKNMKV
QICAVLLYTAVHEFERAMSDWRPIFIHTKPIHVHLLLRAEIPTELNLVYG
FGTTAAGHTKNSYHQTLAG*
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mRNA from alignment at NODE_295_length_31939_cov_4.445679:28339..29039-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2429.t1 ID=Gcaud2429.t1|Name=Gcaud2429.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=701bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:28339..29039- (Gracilaria caudata M_176_S67 male)
ATGAGCAGCGAAACGAGTTCCGAACCCAAAGTAGAGGTTATCGGCACGGA
TCAAACAAATCAAACGTTTGTATTACGGGATGAAGATCATACTTTGGGAA
ATGCACTACGCTACGTCCTCGTGAAGAATCCCGACGTGAAATTCTGCGGA
TACAGTATTCCTCATCCAAGCGAAAACACGATGAATATCCGTGTAGAAAC
TTATGAGAAGCCGGCTGCTGATCTTTTTAAGGAAGCGTTGATTAACTTGA
AAGAGATTGCAGAATTTATTCAAACAAGATTTTCCCTTGAAACTGAAGCC
TACAGAGCAATGAACAATGAATGATGACGAACAAATTTAGAGACGACAGG
GAACCACAAAGGTAACGTGCTTTTTGTTCCTTTTATATAGCCAAATTGTC
ATAAAAGCGTTGCCGAACTTGCCTTTGACCCGATTTTGACTTTGGAAGCC
AGAGACAGATTGGCTTCCTTGTGGTGAAAAACATGAAAGTACAAATTTGT
GCCGTGCTGTTGTACACAGCTGTACATGAATTCGAGAGAGCTATGTCCGA
TTGGAGACCAATTTTTATTCACACCAAGCCGATTCATGTTCATCTCCTCT
TGAGAGCCGAAATTCCTACTGAGTTAAATCTCGTTTACGGATTTGGAACA
ACTGCAGCCGGACACACTAAGAATTCATATCATCAAACTTTGGCTGGTTA
G
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Coding sequence (CDS) from alignment at NODE_295_length_31939_cov_4.445679:28339..29039-

>Gcaud2429.t1 ID=Gcaud2429.t1|Name=Gcaud2429.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=510bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:28339..29039- (Gracilaria caudata M_176_S67 male)
ATGAGCAGCGAAACGAGTTCCGAACCCAAAGTAGAGGTTATCGGCACGGA
TCAAACAAATCAAACGTTTGTATTACGGGATGAAGATCATACTTTGGGAA
ATGCACTACGCTACGTCCTCGTGAAGAATCCCGACGTGAAATTCTGCGGA
TACAGTATTCCTCATCCAAGCGAAAACACGATGAATATCCGTGTAGAAAC
TTATGAGAAGCCGGCTGCTGATCTTTTTAAGGAAGCAGACGACAGGGAAC
CACAAAGCCAGAGACAGATTGGCTTCCTTGTGGTGAAAAACATGAAAGTA
CAAATTTGTGCCGTGCTGTTGTACACAGCTGTACATGAATTCGAGAGAGC
TATGTCCGATTGGAGACCAATTTTTATTCACACCAAGCCGATTCATGTTC
ATCTCCTCTTGAGAGCCGAAATTCCTACTGAGTTAAATCTCGTTTACGGA
TTTGGAACAACTGCAGCCGGACACACTAAGAATTCATATCATCAAACTTT
GGCTGGTTAG
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