Gcaud2429.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2429.t1
Unique NameGcaud2429.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length170
Homology
BLAST of Gcaud2429.t1 vs. uniprot
Match: A0A2V3J6Q0_9FLOR (DNA-directed RNA polymerases I and III subunit RPAC2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6Q0_9FLOR)

HSP 1 Score: 133 bits (335), Expect = 2.020e-37
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 0
Query:    1 MSSETSSEPKVEVIGTDQTNQTFVLRDEDHTLGNALRYVLVKNPDVKFCGYSIPHPSENTMNIRVETYEKPAADLFKEA 79
            M+ +  S PKVE+IG DQ +QTFVLR+EDHTLGNALRYVL+KNPDVKFCGYSIPHPSEN MN+RVETY KPAA+LFK+A
Sbjct:    1 MNQDHPSNPKVEIIGADQRSQTFVLRNEDHTLGNALRYVLIKNPDVKFCGYSIPHPSENIMNVRVETYGKPAAELFKKA 79          
BLAST of Gcaud2429.t1 vs. uniprot
Match: R7QPU5_CHOCR (RNA_pol_L_2 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPU5_CHOCR)

HSP 1 Score: 115 bits (287), Expect = 3.550e-30
Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 0
Query:    7 SEPKVEVIGTDQTNQTFVLRDEDHTLGNALRYVLVKNPDVKFCGYSIPHPSENTMNIRVETYEKPAADLFKEA 79
            +E K+EV G D+T  TF+LRDEDHTLGN+LRYVL+KNP V+FCGYSIPHPSEN MNIRVETY+  AAD+F++A
Sbjct:    7 NESKLEVSGIDETCLTFILRDEDHTLGNSLRYVLMKNPQVRFCGYSIPHPSENIMNIRVETYKGSAADVFRKA 79          
BLAST of Gcaud2429.t1 vs. uniprot
Match: A0A8B6DKY2_MYTGA (DNA-directed RNA polymerase I subunit D n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6DKY2_MYTGA)

HSP 1 Score: 99.4 bits (246), Expect = 9.150e-24
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 0
Query:   10 KVEVIGT----DQTNQTFVLRDEDHTLGNALRYVLVKNPDVKFCGYSIPHPSENTMNIRVETYEKPAADLFK 77
            ++EVI T    D+T +TFV  +EDHTLGN+LRY+++KNPDVKFCGYS+PHPSE  +N RV+TY KPA D+ K
Sbjct:   19 RLEVIETPGEEDETCKTFVFHNEDHTLGNSLRYIIMKNPDVKFCGYSVPHPSELKINFRVQTYGKPAVDILK 90          
BLAST of Gcaud2429.t1 vs. uniprot
Match: UPI00138FD40B (DNA-directed RNA polymerases I and III subunit RPAC2 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FD40B)

HSP 1 Score: 98.6 bits (244), Expect = 1.200e-23
Identity = 43/72 (59.72%), Postives = 60/72 (83.33%), Query Frame = 0
Query:   10 KVEVIGT----DQTNQTFVLRDEDHTLGNALRYVLVKNPDVKFCGYSIPHPSENTMNIRVETYEKPAADLFK 77
            K+EV+ T    D++  TFVL DEDHTLGN+LRY+++KNPDVKFCGYSIPHPSE+ +N+R++T+  PA+D+ +
Sbjct:   12 KLEVVPTGDPDDESCMTFVLHDEDHTLGNSLRYIIMKNPDVKFCGYSIPHPSESKINLRIQTHGTPASDVLR 83          
BLAST of Gcaud2429.t1 vs. uniprot
Match: UPI001E1E03AD (DNA-directed RNA polymerases I and III subunit RPAC2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E03AD)

HSP 1 Score: 98.6 bits (244), Expect = 2.410e-23
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 0
Query:   17 DQTNQTFVLRDEDHTLGNALRYVLVKNPDVKFCGYSIPHPSENTMNIRVETYEKPAADLFK 77
            D+T QTFVL +EDHTLGN+LRYV++KNPD +FCGYSIPHPSE  +N RV+TY KPA D+ +
Sbjct:   36 DETCQTFVLNNEDHTLGNSLRYVIMKNPDTQFCGYSIPHPSEEKINFRVQTYGKPATDVLR 96          
BLAST of Gcaud2429.t1 vs. uniprot
Match: A7SBE9_NEMVE (DNA-directed RNA polymerase I subunit D (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SBE9_NEMVE)

HSP 1 Score: 96.7 bits (239), Expect = 3.280e-23
Identity = 39/61 (63.93%), Postives = 54/61 (88.52%), Query Frame = 0
Query:   17 DQTNQTFVLRDEDHTLGNALRYVLVKNPDVKFCGYSIPHPSENTMNIRVETYEKPAADLFK 77
            D++  TFVL DEDHTLGN+LRY+++KNPDVKFCGYSIPHPSE+ +N+R++T+  PA+D+ +
Sbjct:    1 DESCMTFVLHDEDHTLGNSLRYIIMKNPDVKFCGYSIPHPSESKINLRIQTHGTPASDVLR 61          
BLAST of Gcaud2429.t1 vs. uniprot
Match: UPI000A2A7886 (DNA-directed RNA polymerases I and III subunit RPAC2 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A7886)

HSP 1 Score: 97.4 bits (241), Expect = 5.030e-23
Identity = 43/72 (59.72%), Postives = 58/72 (80.56%), Query Frame = 0
Query:   10 KVEVIGT----DQTNQTFVLRDEDHTLGNALRYVLVKNPDVKFCGYSIPHPSENTMNIRVETYEKPAADLFK 77
            K+EVI T    D+T  TFV+  EDHTLGN+LRY+++KNP+VKFCGYS+PHPSEN +N+R++TY  PA D+ +
Sbjct:   11 KLEVIPTGDPDDETCATFVMHGEDHTLGNSLRYMIMKNPEVKFCGYSLPHPSENKINLRIQTYGSPATDVLR 82          
BLAST of Gcaud2429.t1 vs. uniprot
Match: UPI001B889254 (DNA-directed RNA polymerases I and III subunit RPAC2-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B889254)

HSP 1 Score: 96.3 bits (238), Expect = 1.170e-22
Identity = 39/63 (61.90%), Postives = 53/63 (84.13%), Query Frame = 0
Query:   16 TDQTNQTFVLRDEDHTLGNALRYVLVKNPDVKFCGYSIPHPSENTMNIRVETYEKPAADLFKE 78
            TD+T QTF++ DEDHTLGN LRY++ K+ DV+FCGYSIPHPSEN +N+R++T  KPA D+ ++
Sbjct:   22 TDETCQTFIMEDEDHTLGNGLRYIITKSDDVQFCGYSIPHPSENKLNLRIQTNGKPATDVLED 84          
BLAST of Gcaud2429.t1 vs. uniprot
Match: UPI000C6E0DFD (DNA-directed RNA polymerases I and III subunit RPAC2-like isoform X2 n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6E0DFD)

HSP 1 Score: 94.0 bits (232), Expect = 5.990e-22
Identity = 37/61 (60.66%), Postives = 51/61 (83.61%), Query Frame = 0
Query:   17 DQTNQTFVLRDEDHTLGNALRYVLVKNPDVKFCGYSIPHPSENTMNIRVETYEKPAADLFK 77
            D T +TFVL  EDHTLGN+LRY+++KNP++KFCGY++PHPSEN +N+R++TY   A D F+
Sbjct:   17 DDTTKTFVLNGEDHTLGNSLRYMIMKNPEIKFCGYAVPHPSENKINLRIQTYGSSATDQFR 77          
BLAST of Gcaud2429.t1 vs. uniprot
Match: UPI000C6DEB5F (DNA-directed RNA polymerases I and III subunit RPAC2-like isoform X1 n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DEB5F)

HSP 1 Score: 94.0 bits (232), Expect = 1.650e-21
Identity = 37/61 (60.66%), Postives = 51/61 (83.61%), Query Frame = 0
Query:   17 DQTNQTFVLRDEDHTLGNALRYVLVKNPDVKFCGYSIPHPSENTMNIRVETYEKPAADLFK 77
            D T +TFVL  EDHTLGN+LRY+++KNP++KFCGY++PHPSEN +N+R++TY   A D F+
Sbjct:   17 DDTTKTFVLNGEDHTLGNSLRYMIMKNPEIKFCGYAVPHPSENKINLRIQTYGSSATDQFR 77          
The following BLAST results are available for this feature:
BLAST of Gcaud2429.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6Q0_9FLOR2.020e-3778.48DNA-directed RNA polymerases I and III subunit RPA... [more]
R7QPU5_CHOCR3.550e-3072.60RNA_pol_L_2 domain-containing protein n=1 Tax=Chon... [more]
A0A8B6DKY2_MYTGA9.150e-2462.50DNA-directed RNA polymerase I subunit D n=2 Tax=My... [more]
UPI00138FD40B1.200e-2359.72DNA-directed RNA polymerases I and III subunit RPA... [more]
UPI001E1E03AD2.410e-2368.85DNA-directed RNA polymerases I and III subunit RPA... [more]
A7SBE9_NEMVE3.280e-2363.93DNA-directed RNA polymerase I subunit D (Fragment)... [more]
UPI000A2A78865.030e-2359.72DNA-directed RNA polymerases I and III subunit RPA... [more]
UPI001B8892541.170e-2261.90DNA-directed RNA polymerases I and III subunit RPA... [more]
UPI000C6E0DFD5.990e-2260.66DNA-directed RNA polymerases I and III subunit RPA... [more]
UPI000C6DEB5F1.650e-2160.66DNA-directed RNA polymerases I and III subunit RPA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF13656RNA_pol_L_2coord: 21..79
e-value: 1.9E-24
score: 85.3
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 1..85
e-value: 1.5E-27
score: 97.3
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 4..81
NoneNo IPR availablePANTHERPTHR13946DNA-DIRECTED RNA POLYMERASE I,II,IIIcoord: 16..79
NoneNo IPR availablePANTHERPTHR13946:SF28DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2coord: 16..79
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved sitePROSITEPS01154RNA_POL_L_13KDcoord: 25..56
IPR033898DNA-directed RNA polymerases I and III subunit AC19CDDcd07029RNAP_I_III_AC19coord: 11..79
e-value: 1.93315E-36
score: 119.259

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_295_length_31939_cov_4.445679contigNODE_295_length_31939_cov_4.445679:28339..29039 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2429.t1Gcaud2429.t1Gracilaria caudata M_176_S67 malemRNANODE_295_length_31939_cov_4.445679 28339..29039 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2429.t1 ID=Gcaud2429.t1|Name=Gcaud2429.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=170bp
MSSETSSEPKVEVIGTDQTNQTFVLRDEDHTLGNALRYVLVKNPDVKFCG
YSIPHPSENTMNIRVETYEKPAADLFKEADDREPQSQRQIGFLVVKNMKV
QICAVLLYTAVHEFERAMSDWRPIFIHTKPIHVHLLLRAEIPTELNLVYG
FGTTAAGHTKNSYHQTLAG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009025RBP11-like_dimer
IPR036603RBP11-like
IPR008193RNA_pol_Rpb11_13-16kDa_CS
IPR033898RNAP_AC19