Gcaud2419.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2419.t1
Unique Name	Gcaud2419.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	277

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_295_length_31939_cov_4.445679	contig	NODE_295_length_31939_cov_4.445679:12604..13434 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703382.1
Preferred name	POLR3H
PFAMs	RNA_pol_Rbc25,SHS2_Rpb7-N
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC02795
KEGG ko	ko:K03022
KEGG Reaction	R00435,R00441,R00442,R00443
KEGG Pathway	ko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG Module	M00181
GOs	GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006351,GO:0006352,GO:0006383,GO:0006384,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015630,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Evalue	4.65e-36
EggNOG OGs	COG1095@1\|root,KOG3297@2759\|Eukaryota
Description	transcription initiation from RNA polymerase III promoter
COG category	K
BRITE	br01611,ko00000,ko00001,ko00002,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2419	Gcaud2419	Gracilaria caudata M_176_S67 male	gene	NODE_295_length_31939_cov_4.445679 12604..13434 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2419.t1.start1	Gcaud2419.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_295_length_31939_cov_4.445679 12604..12606 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2419.t1.CDS1	Gcaud2419.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_295_length_31939_cov_4.445679 12604..13434 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2419.t1.exon1	Gcaud2419.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_295_length_31939_cov_4.445679 12604..13434 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2419.t1.stop1	Gcaud2419.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_295_length_31939_cov_4.445679 13432..13434 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2419.t1	Gcaud2419.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_295_length_31939_cov_4.445679 12604..13434 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_295_length_31939_cov_4.445679:12604..13434+
coding sequence from alignment at NODE_295_length_31939_cov_4.445679:12604..13434+

mRNA sequence

>Gcaud2419.t1 ID=Gcaud2419.t1|Name=Gcaud2419.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=277bp
MFKLVTIEDVLLVPARLFGYPRLDALEHVINKRLSDKVIPGVGLVIAFWD
WVQVGEDALQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNEGIFME
MKFFDAITVPKQNLPRPSHFDESERVWIWKPVFEEGGEPQTYYMDVTNES
VFRAIEVKFEDSWRVPPSEKKGDSRNPMSIVGALYDAVLQDNQGLGDPLW
WYEEEEAEGEEEGEEEGEAEMGEAEMQESEEKLNVAKEEKIEPIEVHHKF
EGNAVGVYEEEHVDSQWHQDLEGEGS*

spliced messenger RNA

>Gcaud2419.t1 ID=Gcaud2419.t1|Name=Gcaud2419.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=831bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:12604..13434+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAAATTAGTGACAATAGAGGACGTGCTTTTGGTACCAGCTCGACT
GTTTGGTTATCCACGTCTCGACGCTCTCGAACATGTCATCAACAAACGCT
TGAGTGACAAAGTTATTCCCGGCGTCGGGCTGGTGATAGCTTTTTGGGAC
TGGGTTCAAGTGGGAGAAGATGCGCTTCAGATTCACTCGGGTGAATGTAG
TACCAAATGCACATTCCGCGTGGTTGTATTCGCTCCTTTTGAAGGAGAAG
TTCTTTTCGCACGTGTAAGCGGTGCGTACAACGAGGGCATATTCATGGAG
ATGAAATTCTTCGATGCAATCACCGTTCCGAAACAAAATCTCCCGAGACC
CTCTCATTTTGATGAGAGTGAGAGAGTATGGATTTGGAAGCCAGTATTTG
AGGAGGGTGGAGAGCCGCAAACCTATTACATGGATGTAACTAACGAGAGC
GTATTTCGAGCTATTGAAGTAAAATTTGAAGACTCATGGCGAGTGCCACC
ATCCGAAAAGAAGGGTGACTCCCGAAATCCAATGTCAATTGTTGGAGCCC
TATATGACGCGGTTTTGCAAGATAACCAGGGATTAGGTGACCCCTTATGG
TGGTACGAagaggaagaggcagagggtgaagaagagggtgaagaagaagg
ggaagcggagatgggggaggcagagATGCAGGAATCAGAAGAAAAACTTA
ATGTTGCAAAGGAAGAAAAGATTGAGCCTATTGAGGTTCATCACAAGTTT
GAAGGGAATGCTGTGGGTGTCTACGAAGAGGAACATGTTGATTCACAATG
GCATCAAGATCTCGAAGGAGAAGGAAGCTAG

protein sequence of Gcaud2419.t1

>Gcaud2419.t1 ID=Gcaud2419.t1|Name=Gcaud2419.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=277bp
MFKLVTIEDVLLVPARLFGYPRLDALEHVINKRLSDKVIPGVGLVIAFWD
WVQVGEDALQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNEGIFME
MKFFDAITVPKQNLPRPSHFDESERVWIWKPVFEEGGEPQTYYMDVTNES
VFRAIEVKFEDSWRVPPSEKKGDSRNPMSIVGALYDAVLQDNQGLGDPLW
WYEEEEAEGEEEGEEEGEAEMGEAEMQESEEKLNVAKEEKIEPIEVHHKF
EGNAVGVYEEEHVDSQWHQDLEGEGS*

mRNA from alignment at NODE_295_length_31939_cov_4.445679:12604..13434+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2419.t1 ID=Gcaud2419.t1|Name=Gcaud2419.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=831bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:12604..13434+ (Gracilaria caudata M_176_S67 male)
ATGTTCAAATTAGTGACAATAGAGGACGTGCTTTTGGTACCAGCTCGACT
GTTTGGTTATCCACGTCTCGACGCTCTCGAACATGTCATCAACAAACGCT
TGAGTGACAAAGTTATTCCCGGCGTCGGGCTGGTGATAGCTTTTTGGGAC
TGGGTTCAAGTGGGAGAAGATGCGCTTCAGATTCACTCGGGTGAATGTAG
TACCAAATGCACATTCCGCGTGGTTGTATTCGCTCCTTTTGAAGGAGAAG
TTCTTTTCGCACGTGTAAGCGGTGCGTACAACGAGGGCATATTCATGGAG
ATGAAATTCTTCGATGCAATCACCGTTCCGAAACAAAATCTCCCGAGACC
CTCTCATTTTGATGAGAGTGAGAGAGTATGGATTTGGAAGCCAGTATTTG
AGGAGGGTGGAGAGCCGCAAACCTATTACATGGATGTAACTAACGAGAGC
GTATTTCGAGCTATTGAAGTAAAATTTGAAGACTCATGGCGAGTGCCACC
ATCCGAAAAGAAGGGTGACTCCCGAAATCCAATGTCAATTGTTGGAGCCC
TATATGACGCGGTTTTGCAAGATAACCAGGGATTAGGTGACCCCTTATGG
TGGTACGAagaggaagaggcagagggtgaagaagagggtgaagaagaagg
ggaagcggagatgggggaggcagagATGCAGGAATCAGAAGAAAAACTTA
ATGTTGCAAAGGAAGAAAAGATTGAGCCTATTGAGGTTCATCACAAGTTT
GAAGGGAATGCTGTGGGTGTCTACGAAGAGGAACATGTTGATTCACAATG
GCATCAAGATCTCGAAGGAGAAGGAAGCTAG

Coding sequence (CDS) from alignment at NODE_295_length_31939_cov_4.445679:12604..13434+

>Gcaud2419.t1 ID=Gcaud2419.t1|Name=Gcaud2419.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=831bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:12604..13434+ (Gracilaria caudata M_176_S67 male)
ATGTTCAAATTAGTGACAATAGAGGACGTGCTTTTGGTACCAGCTCGACT
GTTTGGTTATCCACGTCTCGACGCTCTCGAACATGTCATCAACAAACGCT
TGAGTGACAAAGTTATTCCCGGCGTCGGGCTGGTGATAGCTTTTTGGGAC
TGGGTTCAAGTGGGAGAAGATGCGCTTCAGATTCACTCGGGTGAATGTAG
TACCAAATGCACATTCCGCGTGGTTGTATTCGCTCCTTTTGAAGGAGAAG
TTCTTTTCGCACGTGTAAGCGGTGCGTACAACGAGGGCATATTCATGGAG
ATGAAATTCTTCGATGCAATCACCGTTCCGAAACAAAATCTCCCGAGACC
CTCTCATTTTGATGAGAGTGAGAGAGTATGGATTTGGAAGCCAGTATTTG
AGGAGGGTGGAGAGCCGCAAACCTATTACATGGATGTAACTAACGAGAGC
GTATTTCGAGCTATTGAAGTAAAATTTGAAGACTCATGGCGAGTGCCACC
ATCCGAAAAGAAGGGTGACTCCCGAAATCCAATGTCAATTGTTGGAGCCC
TATATGACGCGGTTTTGCAAGATAACCAGGGATTAGGTGACCCCTTATGG
TGGTACGAagaggaagaggcagagggtgaagaagagggtgaagaagaagg
ggaagcggagatgggggaggcagagATGCAGGAATCAGAAGAAAAACTTA
ATGTTGCAAAGGAAGAAAAGATTGAGCCTATTGAGGTTCATCACAAGTTT
GAAGGGAATGCTGTGGGTGTCTACGAAGAGGAACATGTTGATTCACAATG
GCATCAAGATCTCGAAGGAGAAGGAAGCTAG