Gcaud1905.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1905.t1
Unique NameGcaud1905.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length263
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1086_length_13996_cov_4.532255contigNODE_1086_length_13996_cov_4.532255:7335..8123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9818.XP_007947381.1
Preferred nameDHRS4
PFAMsadh_short_C2
Max annot lvl33208|Metazoa
KEGG rclassRC00649
KEGG koko:K11147
KEGG ReactionR08379,R08383
KEGG Pathwayko00830,ko01100,ko04146,map00830,map01100,map04146
GOsGO:0000253,GO:0001523,GO:0001758,GO:0003674,GO:0003824,GO:0004033,GO:0004090,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005782,GO:0005783,GO:0005789,GO:0005829,GO:0006066,GO:0006081,GO:0006605,GO:0006625,GO:0006629,GO:0006720,GO:0006721,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008106,GO:0008150,GO:0008152,GO:0008202,GO:0009987,GO:0010817,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016101,GO:0016491,GO:0016614,GO:0016616,GO:0016620,GO:0016651,GO:0016655,GO:0016903,GO:0018455,GO:0022607,GO:0031090,GO:0031903,GO:0031907,GO:0031974,GO:0031984,GO:0033036,GO:0033365,GO:0034308,GO:0034613,GO:0034754,GO:0042175,GO:0042180,GO:0042445,GO:0042572,GO:0042574,GO:0042579,GO:0042802,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043574,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051259,GO:0051262,GO:0051641,GO:0051649,GO:0052650,GO:0055114,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072662,GO:0072663,GO:0098588,GO:0098805,GO:0098827,GO:1901360,GO:1901615
Evalue2.5e-67
EggNOG OGsCOG1028@1|root,KOG0725@2759|Eukaryota,38HKW@33154|Opisthokonta,3BEAY@33208|Metazoa,3CXDA@33213|Bilateria,488CF@7711|Chordata,49181@7742|Vertebrata,3J95P@40674|Mammalia,34ZJR@311790|Afrotheria
DescriptionDehydrogenase reductase SDR family member
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1905Gcaud1905Gracilaria caudata M_176_S67 malegeneNODE_1086_length_13996_cov_4.532255 7335..8123 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1905.t1.stop1Gcaud1905.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1086_length_13996_cov_4.532255 7335..7337 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1905.t1.CDS1Gcaud1905.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1086_length_13996_cov_4.532255 7335..8123 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1905.t1.exon1Gcaud1905.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1086_length_13996_cov_4.532255 7335..8123 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1905.t1.start1Gcaud1905.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1086_length_13996_cov_4.532255 8121..8123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1905.t1Gcaud1905.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1086_length_13996_cov_4.532255 7335..8123 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1905.t1 ID=Gcaud1905.t1|Name=Gcaud1905.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=263bp
MTIEPQRKLAVITASTTGIGFAIAAQLYRRQYHVLVSSRSEAHVRAAEKR
LRALGGGGQVTGVVCHVSKEKDRIRLFDSARQISDRVDALILNAAISPTF
EKLLNVNDEVWNKIFEVNVSANFRICKLFRPMLKMGSSIVFVTSLAAYFP
IRGLGAYSVSKTALLGMVKVLADELADDGIRVNAVAPGLIRTQFSRPLWK
DNSGSDTVLSEKEIGFEKEGTHLRRIGCADDVASVVDFLVSEGSRFVNGE
TVVVAGATRSRL*
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spliced messenger RNA

>Gcaud1905.t1 ID=Gcaud1905.t1|Name=Gcaud1905.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=789bp|location=Sequence derived from alignment at NODE_1086_length_13996_cov_4.532255:7335..8123- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAATTGAACCGCAAAGAAAATTGGCGGTTATCACTGCCTCAACGAC
TGGCATCGGTTTTGCCATTGCTGCGCAGTTGTATCGACGTCAGTATCATG
TTCTGGTCAGCTCTCGATCAGAAGCGCATGTGCGGGCAGCTGAGAAACGA
CTGAGGGCGCTTGGTGGCGGTGGACAAGTCACTGGGGTAGTTTGTCATGT
TTCCAAAGAAAAGGATCGCATCCGCTTGTTTGACAGCGCTCGTCAGATCT
CAGATAGGGTTGACGCACTTATACTGAATGCAGCGATCTCTCCGACCTTT
GAGAAGCTTTTGAACGTAAACGACGAAGTGTGGAATAAGATATTCGAGGT
GAATGTCTCAGCAAACTTTCGCATTTGTAAGTTGTTCAGACCTATGTTGA
AAATGGGCAGTAGTATTGTTTTCGTCACTTCTTTGGCCGCATATTTTCCA
ATTCGTGGATTAGGGGCGTACTCCGTCTCGAAGACAGCGTTGTTGGGAAT
GGTAAAAGTCCTCGCGGATGAACTCGCAGATGATGGTATTCGGGTTAATG
CGGTGGCTCCAGGATTGATCCGTACACAGTTTTCGCGCCCTTTGTGGAAG
GATAATAGCGGAAGTGATACTGTTTTGAGTGAGAAAGAGATTGGTTTTGA
AAAAGAGGGGACTCATTTACGTCGGATTGGATGCGCGGATGACGTTGCTT
CCGTAGTTGACTTTCTTGTGTCGGAGGGATCGCGATTCGTTAACGGTGAG
ACGGTTGTTGTCGCCGGTGCCACTCGGTCTAGATTATGA
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protein sequence of Gcaud1905.t1

>Gcaud1905.t1 ID=Gcaud1905.t1|Name=Gcaud1905.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=263bp
MTIEPQRKLAVITASTTGIGFAIAAQLYRRQYHVLVSSRSEAHVRAAEKR
LRALGGGGQVTGVVCHVSKEKDRIRLFDSARQISDRVDALILNAAISPTF
EKLLNVNDEVWNKIFEVNVSANFRICKLFRPMLKMGSSIVFVTSLAAYFP
IRGLGAYSVSKTALLGMVKVLADELADDGIRVNAVAPGLIRTQFSRPLWK
DNSGSDTVLSEKEIGFEKEGTHLRRIGCADDVASVVDFLVSEGSRFVNGE
TVVVAGATRSRL*
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mRNA from alignment at NODE_1086_length_13996_cov_4.532255:7335..8123-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1905.t1 ID=Gcaud1905.t1|Name=Gcaud1905.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=789bp|location=Sequence derived from alignment at NODE_1086_length_13996_cov_4.532255:7335..8123- (Gracilaria caudata M_176_S67 male)
ATGACAATTGAACCGCAAAGAAAATTGGCGGTTATCACTGCCTCAACGAC
TGGCATCGGTTTTGCCATTGCTGCGCAGTTGTATCGACGTCAGTATCATG
TTCTGGTCAGCTCTCGATCAGAAGCGCATGTGCGGGCAGCTGAGAAACGA
CTGAGGGCGCTTGGTGGCGGTGGACAAGTCACTGGGGTAGTTTGTCATGT
TTCCAAAGAAAAGGATCGCATCCGCTTGTTTGACAGCGCTCGTCAGATCT
CAGATAGGGTTGACGCACTTATACTGAATGCAGCGATCTCTCCGACCTTT
GAGAAGCTTTTGAACGTAAACGACGAAGTGTGGAATAAGATATTCGAGGT
GAATGTCTCAGCAAACTTTCGCATTTGTAAGTTGTTCAGACCTATGTTGA
AAATGGGCAGTAGTATTGTTTTCGTCACTTCTTTGGCCGCATATTTTCCA
ATTCGTGGATTAGGGGCGTACTCCGTCTCGAAGACAGCGTTGTTGGGAAT
GGTAAAAGTCCTCGCGGATGAACTCGCAGATGATGGTATTCGGGTTAATG
CGGTGGCTCCAGGATTGATCCGTACACAGTTTTCGCGCCCTTTGTGGAAG
GATAATAGCGGAAGTGATACTGTTTTGAGTGAGAAAGAGATTGGTTTTGA
AAAAGAGGGGACTCATTTACGTCGGATTGGATGCGCGGATGACGTTGCTT
CCGTAGTTGACTTTCTTGTGTCGGAGGGATCGCGATTCGTTAACGGTGAG
ACGGTTGTTGTCGCCGGTGCCACTCGGTCTAGATTATGA
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Coding sequence (CDS) from alignment at NODE_1086_length_13996_cov_4.532255:7335..8123-

>Gcaud1905.t1 ID=Gcaud1905.t1|Name=Gcaud1905.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=789bp|location=Sequence derived from alignment at NODE_1086_length_13996_cov_4.532255:7335..8123- (Gracilaria caudata M_176_S67 male)
ATGACAATTGAACCGCAAAGAAAATTGGCGGTTATCACTGCCTCAACGAC
TGGCATCGGTTTTGCCATTGCTGCGCAGTTGTATCGACGTCAGTATCATG
TTCTGGTCAGCTCTCGATCAGAAGCGCATGTGCGGGCAGCTGAGAAACGA
CTGAGGGCGCTTGGTGGCGGTGGACAAGTCACTGGGGTAGTTTGTCATGT
TTCCAAAGAAAAGGATCGCATCCGCTTGTTTGACAGCGCTCGTCAGATCT
CAGATAGGGTTGACGCACTTATACTGAATGCAGCGATCTCTCCGACCTTT
GAGAAGCTTTTGAACGTAAACGACGAAGTGTGGAATAAGATATTCGAGGT
GAATGTCTCAGCAAACTTTCGCATTTGTAAGTTGTTCAGACCTATGTTGA
AAATGGGCAGTAGTATTGTTTTCGTCACTTCTTTGGCCGCATATTTTCCA
ATTCGTGGATTAGGGGCGTACTCCGTCTCGAAGACAGCGTTGTTGGGAAT
GGTAAAAGTCCTCGCGGATGAACTCGCAGATGATGGTATTCGGGTTAATG
CGGTGGCTCCAGGATTGATCCGTACACAGTTTTCGCGCCCTTTGTGGAAG
GATAATAGCGGAAGTGATACTGTTTTGAGTGAGAAAGAGATTGGTTTTGA
AAAAGAGGGGACTCATTTACGTCGGATTGGATGCGCGGATGACGTTGCTT
CCGTAGTTGACTTTCTTGTGTCGGAGGGATCGCGATTCGTTAACGGTGAG
ACGGTTGTTGTCGCCGGTGCCACTCGGTCTAGATTATGA
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