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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005707783.1 |
| Preferred name | ABCF3 |
| PFAMs | ABC_tran,ABC_tran_Xtn |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K06158 |
| GOs | GO:0000166,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008144,GO:0008150,GO:0009889,GO:0009893,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010608,GO:0010941,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019220,GO:0019222,GO:0022626,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033135,GO:0033138,GO:0034248,GO:0035639,GO:0036094,GO:0042325,GO:0042327,GO:0042981,GO:0043067,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0045937,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0097367,GO:1900247,GO:1901265,GO:1901363,GO:1990904,GO:2000112,GO:2000765 |
| Evalue | 6.49e-222 |
| EggNOG OGs | COG0488@1|root,KOG0062@2759|Eukaryota |
| Description | ATPase activity |
| COG category | J |
| BRITE | ko00000,ko03012 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1903.t1.start1 | Gcaud1903.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1086_length_13996_cov_4.532255 1927..1929 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1903.t1.stop1 | Gcaud1903.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1086_length_13996_cov_4.532255 4323..4325 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1903.t1 ID=Gcaud1903.t1|Name=Gcaud1903.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=693bp LPRHFQVFSSDSALRDDEDEVVEVVSIFLPHLNPDISPSQSGQVARDIRR QLHGAPTEDHTREKLVRLSKATRLGASVGIDTGRRKGARAKQTAGNSNQT LDRSAEAERAKEASAARRARRVGAQVKTYQSEATVSSVKAKYTPGSTDVH IEGLDLSFGGMTLLEGAELHIPYGRRVGIIGRNGCGKTTLMRAIARRELP IPEDMDIVYVEQEIAGSEKTPLEVVLESDLERQELLAEEEELNEKLTEAE AAGKEPDPSVAARLAEVYEKLGQMDADKAKARAAAILDGLGFSAHAMSNQ SVNEFSGGWRMRISLASALFLEPRLLLLDEPSNHLDAMTVIWLGDYLSRW PHTIACVSHDRAFLNEICTDVIHVKDHKLHPYSGNYDDFEKARRERLKEL ERTAESQEMKRAHIQKFVDKFRYNAKRASMAQSRLKMLQRMDEDRVVLPS EEEEFSFTFPDPGALTGSHASVQICEVTFGYPEREVLFRDLDFSINMDSR TVLLGPNGAGKSTLLKLLLGENIPIEGEVKKSPKLRLGYFSQHHMDTLVL WRTPLEHMKVTFPDAIMPELRSHLAKLGVRNEQALRPINTLSGGQKSRVA LAVITFQKPHILILDEPTNHLDIETLDSLIMALNSFNGGLLVVTHDARLV ASVCETICVCEDGKVTEFRGEYHEYRKQMVQRLRARSKLFSM* back to topspliced messenger RNA >Gcaud1903.t1 ID=Gcaud1903.t1|Name=Gcaud1903.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2079bp|location=Sequence derived from alignment at NODE_1086_length_13996_cov_4.532255:1927..4325+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
CTGCCAAGGCATTTTCAAGTTTTCAGCTCTGACTCTGCGCTACGTGACGA TGAAGACGAGGTAGTTGAAGTGGTTTCAATATTTCTGCCCCACCTGAACC CTGACATTTCTCCGTCACAAAGCGGACAAGTCGCTCGCGATATTCGTCGA CAACTTCATGGAGCGCCAACTGAGGATCATACACGAGAAAAACTCGTGCG TCTTTCGAAAGCAACCCGGCTTGGGGCAAGTGTGGGTATAGATACTGGAA GGCGCAAAGGTGCCAGAGCAAAGCAAACGGCTGGAAACTCCAACCAGACT TTGGACCGTTCTGCGGAAGCAGAAAGAGCAAAAGAAGCTTCAGCCGCACG TCGAGCCAGGCGCGTCGGAGCGCAAGTCAAGACGTATCAATCCGAGGCGA CAGTAAGCAGTGTCAAAGCGAAGTACACTCCTGGTTCAACTGACGTTCAT ATCGAGGGATTGGATCTGTCATTTGGAGGAATGACCTTATTGGAAGGAGC TGAGCTCCATATACCGTACGGCAGAAGAGTTGGAATCATTGGAAGAAATG GTTGTGGTAAGACTACATTAATGCGGGCGATTGCACGCCGAGAACTACCA ATTCCCGAAGATATGGATATTGTCTACGTGGAACAAGAAATTGCTGGAAG TGAGAAGACGCCTTTAGAGGTTGTGCTAGAAAGCGATTTAGAGAGGCAAG AACTTTTGGCTGAAGAGGAAGAGCTTAATGAGAAGCTCACAGAAGCGGAG GCTGCTGGCAAGGAGCCTGACCCATCTGTTGCTGCCCGACTCGCCGAGGT CTACGAGAAGCTCGGTCAGATGGATGCCGACAAGGCGAAGGCACGTGCTG CGGCTATTCTGGATGGGCTTGGATTCAGTGCTCACGCCATGTCAAACCAA AGCGTGAACGAGTTTTCTGGTGGTTGGCGTATGCGGATTTCGTTGGCCTC CGCGCTTTTCCTGGAACCTAGACTGTTATTGTTGGACGAACCTTCCAATC ATCTTGACGCAATGACCGTCATCTGGTTGGGCGACTACCTCTCTCGTTGG CCGCACACAATTGCATGTGTATCTCATGACCGAGCCTTTCTTAACGAGAT TTGCACAGATGTAATTCACGTCAAGGATCACAAACTACATCCGTACAGTG GCAATTATGATGATTTCGAGAAGGCAAGAAGGGAGAGGCTCAAAGAACTT GAACGTACTGCAGAAAGTCAAGAAATGAAGCGCGCGCATATTCAAAAGTT TGTGGACAAGTTCCGCTACAATGCTAAACGTGCTAGCATGGCACAAAGCC GACTGAAGATGTTACAACGCATGGACGAAGATCGCGTGGTACTTCCCAGT GAAGAGGAGGAGTTTTCGTTCACATTCCCAGACCCAGGAGCATTGACAGG TTCTCACGCATCTGTTCAGATCTGCGAAGTCACGTTTGGCTACCCAGAAC GAGAAGTCCTGTTTCGAGATTTGGACTTCAGTATTAACATGGATTCTCGA ACCGTACTCCTTGGTCCCAATGGGGCCGGTAAGTCGACGTTGCTCAAGCT CCTTCTTGGGGAGAACATTCCTATCGAAGGTGAAGTGAAGAAGTCGCCAA AGCTGCGACTGGGATACTTCTCACAACATCACATGGACACACTAGTGCTC TGGCGAACACCGTTGGAGCACATGAAAGTAACATTCCCAGATGCAATAAT GCCCGAATTACGCAGTCACTTGGCCAAGCTTGGAGTGCGTAATGAACAAG CTTTGCGACCCATTAATACGTTGTCTGGGGGTCAAAAGAGTCGGGTGGCT CTCGCCGTTATAACTTTCCAGAAGCCACATATCTTGATTCTTGACGAACC TACGAATCATCTCGACATCGAGACTCTGGATTCGCTGATAATGGCTCTGA ACTCTTTTAACGGGGGTTTACTGGTGGTTACACATGATGCGAGACTGGTT GCTAGTGTCTGTGAGACAATATGCGTGTGTGAGGATGGTAAGGTGACCGA GTTTAGAGGCGAGTATCACGAATATCGAAAACAGATGGTACAAAGACTAC GTGCAAGATCGAAGCTCTTCTCGATGTAA back to topprotein sequence of Gcaud1903.t1 >Gcaud1903.t1 ID=Gcaud1903.t1|Name=Gcaud1903.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=693bp
LPRHFQVFSSDSALRDDEDEVVEVVSIFLPHLNPDISPSQSGQVARDIRR QLHGAPTEDHTREKLVRLSKATRLGASVGIDTGRRKGARAKQTAGNSNQT LDRSAEAERAKEASAARRARRVGAQVKTYQSEATVSSVKAKYTPGSTDVH IEGLDLSFGGMTLLEGAELHIPYGRRVGIIGRNGCGKTTLMRAIARRELP IPEDMDIVYVEQEIAGSEKTPLEVVLESDLERQELLAEEEELNEKLTEAE AAGKEPDPSVAARLAEVYEKLGQMDADKAKARAAAILDGLGFSAHAMSNQ SVNEFSGGWRMRISLASALFLEPRLLLLDEPSNHLDAMTVIWLGDYLSRW PHTIACVSHDRAFLNEICTDVIHVKDHKLHPYSGNYDDFEKARRERLKEL ERTAESQEMKRAHIQKFVDKFRYNAKRASMAQSRLKMLQRMDEDRVVLPS EEEEFSFTFPDPGALTGSHASVQICEVTFGYPEREVLFRDLDFSINMDSR TVLLGPNGAGKSTLLKLLLGENIPIEGEVKKSPKLRLGYFSQHHMDTLVL WRTPLEHMKVTFPDAIMPELRSHLAKLGVRNEQALRPINTLSGGQKSRVA LAVITFQKPHILILDEPTNHLDIETLDSLIMALNSFNGGLLVVTHDARLV ASVCETICVCEDGKVTEFRGEYHEYRKQMVQRLRARSKLFSM* back to topmRNA from alignment at NODE_1086_length_13996_cov_4.532255:1927..4325+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1903.t1 ID=Gcaud1903.t1|Name=Gcaud1903.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2399bp|location=Sequence derived from alignment at NODE_1086_length_13996_cov_4.532255:1927..4325+ (Gracilaria caudata M_176_S67 male) CTGCCAAGGCATTTTCAAGTTTTCAGCGTAAGTTCTTGAAAATGTTCGTC
AGTGAGGTAAAATGCATGTCATGCATGTGCTCGCAATACTCGCAATTCCA
ATCATGACGAGCGAACGGTAGCGGCATCAGCTTGTTAGCTATCTTCGTAG
TATCACCCGGTGCGACATTTCCTCATGCAGCTTCCTGCCTTTGCAACTGA
CCCGCATTCAGTCTGACTCTGCGCTACGTGACGATGGTAGGTACAAGTGT
GACGCTTGAAAACGCGCGCGACGCTCTGGCGAATGCTGTAGGGCTTGGAA
ATCCTTTAACCGATCTTGATCCTGCGGTGATCCAATATCTAACTTCAGCG
CTCGCCGATTCGGCTGCTGCAGAAGACGAGGTAGTTGAAGTGGTTTCAAT
ATTTCTGCCCCACCTGAACCCTGACATTTCTCCGTCACAAAGCGGACAAG
TCGCTCGCGATATTCGTCGACAACTTCATGGAGCGCCAACTGAGGATCAT
ACACGAGAAAAACTCGTGCGTCTTTCGAAAGCAACCCGGCTTGGGGCAAG
TGTGGGTATAGATACTGGAAGGCGCAAAGGTGCCAGAGCAAAGCAAACGG
CTGGAAACTCCAACCAGACTTTGGACCGTTCTGCGGAAGCAGAAAGAGCA
AAAGAAGCTTCAGCCGCACGTCGAGCCAGGCGCGTCGGAGCGCAAGTCAA
GACGTATCAATCCGAGGCGACAGTAAGCAGTGTCAAAGCGAAGTACACTC
CTGGTTCAACTGACGTTCATATCGAGGGATTGGATCTGTCATTTGGAGGA
ATGACCTTATTGGAAGGAGCTGAGCTCCATATACCGTACGGCAGAAGAGT
TGGAATCATTGGAAGAAATGGTTGTGGTAAGACTACATTAATGCGGGCGA
TTGCACGCCGAGAACTACCAATTCCCGAAGATATGGATATTGTCTACGTG
GAACAAGAAATTGCTGGAAGTGAGAAGACGCCTTTAGAGGTTGTGCTAGA
AAGCGATTTAGAGAGGCAAGAACTTTTGGCTGAAGAGGAAGAGCTTAATG
AGAAGCTCACAGAAGCGGAGGCTGCTGGCAAGGAGCCTGACCCATCTGTT
GCTGCCCGACTCGCCGAGGTCTACGAGAAGCTCGGTCAGATGGATGCCGA
CAAGGCGAAGGCACGTGCTGCGGCTATTCTGGATGGGCTTGGATTCAGTG
CTCACGCCATGTCAAACCAAAGCGTGAACGAGTTTTCTGGTGGTTGGCGT
ATGCGGATTTCGTTGGCCTCCGCGCTTTTCCTGGAACCTAGACTGTTATT
GTTGGACGAACCTTCCAATCATCTTGACGCAATGACCGTCATCTGGTTGG
GCGACTACCTCTCTCGTTGGCCGCACACAATTGCATGTGTATCTCATGAC
CGAGCCTTTCTTAACGAGATTTGCACAGATGTAATTCACGTCAAGGATCA
CAAACTACATCCGTACAGTGGCAATTATGATGATTTCGAGAAGGCAAGAA
GGGAGAGGCTCAAAGAACTTGAACGTACTGCAGAAAGTCAAGAAATGAAG
CGCGCGCATATTCAAAAGTTTGTGGACAAGTTCCGCTACAATGCTAAACG
TGCTAGCATGGCACAAAGCCGACTGAAGATGTTACAACGCATGGACGAAG
ATCGCGTGGTACTTCCCAGTGAAGAGGAGGAGTTTTCGTTCACATTCCCA
GACCCAGGAGCATTGACAGGTTCTCACGCATCTGTTCAGATCTGCGAAGT
CACGTTTGGCTACCCAGAACGAGAAGTCCTGTTTCGAGATTTGGACTTCA
GTATTAACATGGATTCTCGAACCGTACTCCTTGGTCCCAATGGGGCCGGT
AAGTCGACGTTGCTCAAGCTCCTTCTTGGGGAGAACATTCCTATCGAAGG
TGAAGTGAAGAAGTCGCCAAAGCTGCGACTGGGATACTTCTCACAACATC
ACATGGACACACTAGTGCTCTGGCGAACACCGTTGGAGCACATGAAAGTA
ACATTCCCAGATGCAATAATGCCCGAATTACGCAGTCACTTGGCCAAGCT
TGGAGTGCGTAATGAACAAGCTTTGCGACCCATTAATACGTTGTCTGGGG
GTCAAAAGAGTCGGGTGGCTCTCGCCGTTATAACTTTCCAGAAGCCACAT
ATCTTGATTCTTGACGAACCTACGAATCATCTCGACATCGAGACTCTGGA
TTCGCTGATAATGGCTCTGAACTCTTTTAACGGGGGTTTACTGGTGGTTA
CACATGATGCGAGACTGGTTGCTAGTGTCTGTGAGACAATATGCGTGTGT
GAGGATGGTAAGGTGACCGAGTTTAGAGGCGAGTATCACGAATATCGAAA
ACAGATGGTACAAAGACTACGTGCAAGATCGAAGCTCTTCTCGATGTAA back to topCoding sequence (CDS) from alignment at NODE_1086_length_13996_cov_4.532255:1927..4325+ >Gcaud1903.t1 ID=Gcaud1903.t1|Name=Gcaud1903.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2079bp|location=Sequence derived from alignment at NODE_1086_length_13996_cov_4.532255:1927..4325+ (Gracilaria caudata M_176_S67 male) CTGCCAAGGCATTTTCAAGTTTTCAGCTCTGACTCTGCGCTACGTGACGA TGAAGACGAGGTAGTTGAAGTGGTTTCAATATTTCTGCCCCACCTGAACC CTGACATTTCTCCGTCACAAAGCGGACAAGTCGCTCGCGATATTCGTCGA CAACTTCATGGAGCGCCAACTGAGGATCATACACGAGAAAAACTCGTGCG TCTTTCGAAAGCAACCCGGCTTGGGGCAAGTGTGGGTATAGATACTGGAA GGCGCAAAGGTGCCAGAGCAAAGCAAACGGCTGGAAACTCCAACCAGACT TTGGACCGTTCTGCGGAAGCAGAAAGAGCAAAAGAAGCTTCAGCCGCACG TCGAGCCAGGCGCGTCGGAGCGCAAGTCAAGACGTATCAATCCGAGGCGA CAGTAAGCAGTGTCAAAGCGAAGTACACTCCTGGTTCAACTGACGTTCAT ATCGAGGGATTGGATCTGTCATTTGGAGGAATGACCTTATTGGAAGGAGC TGAGCTCCATATACCGTACGGCAGAAGAGTTGGAATCATTGGAAGAAATG GTTGTGGTAAGACTACATTAATGCGGGCGATTGCACGCCGAGAACTACCA ATTCCCGAAGATATGGATATTGTCTACGTGGAACAAGAAATTGCTGGAAG TGAGAAGACGCCTTTAGAGGTTGTGCTAGAAAGCGATTTAGAGAGGCAAG AACTTTTGGCTGAAGAGGAAGAGCTTAATGAGAAGCTCACAGAAGCGGAG GCTGCTGGCAAGGAGCCTGACCCATCTGTTGCTGCCCGACTCGCCGAGGT CTACGAGAAGCTCGGTCAGATGGATGCCGACAAGGCGAAGGCACGTGCTG CGGCTATTCTGGATGGGCTTGGATTCAGTGCTCACGCCATGTCAAACCAA AGCGTGAACGAGTTTTCTGGTGGTTGGCGTATGCGGATTTCGTTGGCCTC CGCGCTTTTCCTGGAACCTAGACTGTTATTGTTGGACGAACCTTCCAATC ATCTTGACGCAATGACCGTCATCTGGTTGGGCGACTACCTCTCTCGTTGG CCGCACACAATTGCATGTGTATCTCATGACCGAGCCTTTCTTAACGAGAT TTGCACAGATGTAATTCACGTCAAGGATCACAAACTACATCCGTACAGTG GCAATTATGATGATTTCGAGAAGGCAAGAAGGGAGAGGCTCAAAGAACTT GAACGTACTGCAGAAAGTCAAGAAATGAAGCGCGCGCATATTCAAAAGTT TGTGGACAAGTTCCGCTACAATGCTAAACGTGCTAGCATGGCACAAAGCC GACTGAAGATGTTACAACGCATGGACGAAGATCGCGTGGTACTTCCCAGT GAAGAGGAGGAGTTTTCGTTCACATTCCCAGACCCAGGAGCATTGACAGG TTCTCACGCATCTGTTCAGATCTGCGAAGTCACGTTTGGCTACCCAGAAC GAGAAGTCCTGTTTCGAGATTTGGACTTCAGTATTAACATGGATTCTCGA ACCGTACTCCTTGGTCCCAATGGGGCCGGTAAGTCGACGTTGCTCAAGCT CCTTCTTGGGGAGAACATTCCTATCGAAGGTGAAGTGAAGAAGTCGCCAA AGCTGCGACTGGGATACTTCTCACAACATCACATGGACACACTAGTGCTC TGGCGAACACCGTTGGAGCACATGAAAGTAACATTCCCAGATGCAATAAT GCCCGAATTACGCAGTCACTTGGCCAAGCTTGGAGTGCGTAATGAACAAG CTTTGCGACCCATTAATACGTTGTCTGGGGGTCAAAAGAGTCGGGTGGCT CTCGCCGTTATAACTTTCCAGAAGCCACATATCTTGATTCTTGACGAACC TACGAATCATCTCGACATCGAGACTCTGGATTCGCTGATAATGGCTCTGA ACTCTTTTAACGGGGGTTTACTGGTGGTTACACATGATGCGAGACTGGTT GCTAGTGTCTGTGAGACAATATGCGTGTGTGAGGATGGTAAGGTGACCGA GTTTAGAGGCGAGTATCACGAATATCGAAAACAGATGGTACAAAGACTAC GTGCAAGATCGAAGCTCTTCTCGATGTAA back to top
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