Gcaud2523.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2523.t2
Unique NameGcaud2523.t2
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length114
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_290_length_32094_cov_4.541512contigNODE_290_length_32094_cov_4.541512:1443..1983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13333.ERN06244
PFAMsNDUFB11
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
Evalue0.000145
EggNOG OGs2CMPH@1|root,2S3YQ@2759|Eukaryota,37W50@33090|Viridiplantae,3GKF4@35493|Streptophyta
DescriptionNADH-ubiquinone oxidoreductase 11 kDa subunit
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2523Gcaud2523Gracilaria caudata M_176_S67 malegeneNODE_290_length_32094_cov_4.541512 1424..1983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2523.t2Gcaud2523.t2Gracilaria caudata M_176_S67 malepolypeptideNODE_290_length_32094_cov_4.541512 1443..1983 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2523.t2.start1Gcaud2523.t2.start1Gracilaria caudata M_176_S67 malestart_codonNODE_290_length_32094_cov_4.541512 1443..1445 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2523.t2.CDS1Gcaud2523.t2.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_290_length_32094_cov_4.541512 1443..1486 +
Gcaud2523.t2.CDS2Gcaud2523.t2.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_290_length_32094_cov_4.541512 1617..1716 +
Gcaud2523.t2.CDS3Gcaud2523.t2.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_290_length_32094_cov_4.541512 1786..1983 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2523.t2.exon1Gcaud2523.t2.exon1Gracilaria caudata M_176_S67 maleexonNODE_290_length_32094_cov_4.541512 1443..1486 +
Gcaud2523.t2.exon2Gcaud2523.t2.exon2Gracilaria caudata M_176_S67 maleexonNODE_290_length_32094_cov_4.541512 1617..1716 +
Gcaud2523.t2.exon3Gcaud2523.t2.exon3Gracilaria caudata M_176_S67 maleexonNODE_290_length_32094_cov_4.541512 1786..1983 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2523.t2.intron1Gcaud2523.t2.intron1Gracilaria caudata M_176_S67 maleintronNODE_290_length_32094_cov_4.541512 1487..1616 +
Gcaud2523.t2.intron2Gcaud2523.t2.intron2Gracilaria caudata M_176_S67 maleintronNODE_290_length_32094_cov_4.541512 1717..1785 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2523.t2.stop1Gcaud2523.t2.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_290_length_32094_cov_4.541512 1981..1983 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2523.t2 ID=Gcaud2523.t2|Name=Gcaud2523.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=114bp
MCCACQSSFSISVRSSGLFGMYFIKYWIGRGMEDPADREAKTKAHLEKIQ
ANIPVVKKRWDTPLLPKGYWNAPGMTSMTKERLAEAEGQILSPYERALTD
MDASAEKNKHAST*
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spliced messenger RNA

>Gcaud2523.t2 ID=Gcaud2523.t2|Name=Gcaud2523.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=342bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:1443..1983+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTTGCGCCTGTCAATCGTCTTTCTCCATCTCcgttcgttcAAGCGG
TTTATTCGGCATGTATTTCATCAAGTACTGGATCGGCAGAGGGATGGAGG
ATCCTGCTGATAGGGAGGCGAAAACGAAAGCACACTTGGAAAAGATCCAA
GCCAATATTCCCGTCGTCAAGAAGAGGTGGGACACTCCGCTTCTCCCGAA
AGGTTATTGGAACGCGCCTGGCATGACTTCTATGACTAAGGAACGTCTTG
CGGAAGCGGAAGGGCAGATTCTGTCACCATATGAGCGTGCGCTCACAGAT
ATGGACGCTAGCGCGGAAAAGAACAAGCATGCTTCGACGTGA
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protein sequence of Gcaud2523.t2

>Gcaud2523.t2 ID=Gcaud2523.t2|Name=Gcaud2523.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=114bp
MCCACQSSFSISVRSSGLFGMYFIKYWIGRGMEDPADREAKTKAHLEKIQ
ANIPVVKKRWDTPLLPKGYWNAPGMTSMTKERLAEAEGQILSPYERALTD
MDASAEKNKHAST*
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mRNA from alignment at NODE_290_length_32094_cov_4.541512:1443..1983+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2523.t2 ID=Gcaud2523.t2|Name=Gcaud2523.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=541bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:1443..1983+ (Gracilaria caudata M_176_S67 male)
ATGTGTTGCGCCTGTCAATCGTCTTTCTCCATCTCcgttcgttcgttcgt
tcgttctaccttcgtATCTCCGGGTCGAAGACTCCGACACACACATCTAA
CACCTACCTCCCTTTGCAATTTCACCGCGACCTACACAAGTCTCGTTTCC
TGCTTTTCCCCGACATCTTTTTAGAAGCGGTTTATTCGGCATGTATTTCA
TCAAGTACTGGATCGGCAGAGGGATGGAGGATCCTGCTGATAGGGAGGCG
AAAACGAAAGCACACTTGGAAAAGGTAAGAAACTCTCCGTATATACGTCG
TGCCCCATATCACACCATCTTCCTGACCACAGCCGTTCATTAGATCCAAG
CCAATATTCCCGTCGTCAAGAAGAGGTGGGACACTCCGCTTCTCCCGAAA
GGTTATTGGAACGCGCCTGGCATGACTTCTATGACTAAGGAACGTCTTGC
GGAAGCGGAAGGGCAGATTCTGTCACCATATGAGCGTGCGCTCACAGATA
TGGACGCTAGCGCGGAAAAGAACAAGCATGCTTCGACGTGA
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Coding sequence (CDS) from alignment at NODE_290_length_32094_cov_4.541512:1443..1983+

>Gcaud2523.t2 ID=Gcaud2523.t2|Name=Gcaud2523.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=342bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:1443..1983+ (Gracilaria caudata M_176_S67 male)
ATGTGTTGCGCCTGTCAATCGTCTTTCTCCATCTCcgttcgttcAAGCGG
TTTATTCGGCATGTATTTCATCAAGTACTGGATCGGCAGAGGGATGGAGG
ATCCTGCTGATAGGGAGGCGAAAACGAAAGCACACTTGGAAAAGATCCAA
GCCAATATTCCCGTCGTCAAGAAGAGGTGGGACACTCCGCTTCTCCCGAA
AGGTTATTGGAACGCGCCTGGCATGACTTCTATGACTAAGGAACGTCTTG
CGGAAGCGGAAGGGCAGATTCTGTCACCATATGAGCGTGCGCTCACAGAT
ATGGACGCTAGCGCGGAAAAGAACAAGCATGCTTCGACGTGA
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