Gcaud7824.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7824.t1
Unique NameGcaud7824.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length158
Homology
BLAST of Gcaud7824.t1 vs. uniprot
Match: A0A2V3IFC3_9FLOR (Protein CLP1-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFC3_9FLOR)

HSP 1 Score: 282 bits (721), Expect = 8.050e-92
Identity = 137/157 (87.26%), Postives = 148/157 (94.27%), Query Frame = 0
Query:    1 MALDDGAQTAEHPARNFTLPSEHELRFEIPPDVASASLTLLTGSAELFGLALAQNKPYHLPPALNAAAFTWHGAELALRAPEHVMAYTATETPMPSYIKAHSILQSKREIARRAGIPGPRAVIVGPHDCGKTALVNILAAYCVRANRTAVVADMDPS 157
            MAL+D    ++HPAR F+L SEHELRFEIPPDVASASLTLLTGSAELFGLALAQNKPYHL P+LNAAAFTWHGA LALRAP++VMAYTAT+TPMPSYI AHSILQSKR++ARRAGIPGPRAV+VGPHDCGKTALVNILAAYCVRANRTAVVADMDPS
Sbjct:    1 MALEDAVDASDHPAREFSLQSEHELRFEIPPDVASASLTLLTGSAELFGLALAQNKPYHLAPSLNAAAFTWHGATLALRAPKYVMAYTATDTPMPSYINAHSILQSKRQVARRAGIPGPRAVVVGPHDCGKTALVNILAAYCVRANRTAVVADMDPS 157          
BLAST of Gcaud7824.t1 vs. uniprot
Match: R7QJX8_CHOCR (Pre-mRNA cleavage complex II protein Clp1, putative n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJX8_CHOCR)

HSP 1 Score: 196 bits (499), Expect = 2.150e-58
Identity = 97/144 (67.36%), Postives = 114/144 (79.17%), Query Frame = 0
Query:   15 RNFTLPSEHELRFEIPPDVAS-ASLTLLTGSAELFGLALAQNKPYHLPPALNAAAFTWHGAELALRAPEHVMAYTATETPMPSYIKAHSILQSKREIARRAGIPGPRAVIVGPHDCGKTALVNILAAYCVRANRTAVVADMDPS 157
            R FTLP+EHELRFEIP D AS  +LTL  GSAE+FG+ LA N+PY LPP LNAAAFTW GA L+L AP +VMAYTA +TPMP YI AHSILQS+R +A  AGIPGPR ++VGP DCGKT LV +LA YCV+ N + +V D+DPS
Sbjct:   20 RKFTLPAEHELRFEIPFDNASDINLTLEHGSAEVFGIELALNRPYTLPPGLNAAAFTWLGATLSLAAPSNVMAYTAGDTPMPHYISAHSILQSRRNLAMSAGIPGPRVMVVGPRDCGKTTLVKLLATYCVKVNTSVIVVDLDPS 163          
BLAST of Gcaud7824.t1 vs. uniprot
Match: A0A167LCL9_PHYB8 (mRNA cleavage and polyadenylation factor CLP1 n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167LCL9_PHYB8)

HSP 1 Score: 116 bits (291), Expect = 6.750e-28
Identity = 60/143 (41.96%), Postives = 84/143 (58.74%), Query Frame = 0
Query:   15 RNFTLPSEHELRFEIPPDVASASLTLLTGSAELFGLALAQNKPYHLPPALNAAAFTWHGAELALRAPEHVMAYTATETPMPSYIKAHSILQSKREIARRAGIPGPRAVIVGPHDCGKTALVNILAAYCVRANRTAVVADMDPS 157
            R   L  +HE RFE+  +V    + LL G+AE+FG  LA N PY       AA +TWHG ++ ++  + ++ YTA ETPM SY  AH  +Q  RE A+R G  GPR +++GPHD GKT+L   L +Y +R N   +   +D S
Sbjct:   10 RTIDLDPDHEFRFEVDFNV-KVQIKLLKGTAEIFGTELAMNVPYTFS-GRKAAVYTWHGCKIEVKG-QFLVEYTANETPMTSYFNAHMAIQQMREKAKRDGERGPRVLVIGPHDVGKTSLCKTLVSYALRQNEKPIYVSLDTS 149          
BLAST of Gcaud7824.t1 vs. uniprot
Match: A0A5J4YSA3_PORPP (Protein CLP1 homolog n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSA3_PORPP)

HSP 1 Score: 112 bits (279), Expect = 2.890e-26
Identity = 64/148 (43.24%), Postives = 85/148 (57.43%), Query Frame = 0
Query:   10 AEHPARNFTLPSEHELRFEIPPDVASASLTLLTGSAELFGLALAQNKPYHLPPALNAAAFTWHGAELALRAPEHVMAYTATETPMPSYIKAHSILQSKREIARRAGIPGPRAVIVGPHDCGKTALVNILAAYCVRANRTAVVADMDPS 157
            AE     F L    ELRFE+    AS  L + +G AE+FG+ LAQN+ Y    A   A FTW G  + L     V +Y   ETPM  Y+ AHS+LQSKR++A+   + GPR ++VGP  CGKT+L  IL AY ++ N +A   + D S
Sbjct:    3 AEDEVETFELEEGEELRFEVGAS-ASVELQVTSGYAEVFGVELAQNRRYVFRNA-KLALFTWKGCSVTLTGGTEV-SYKVAETPMAIYVNAHSVLQSKRKLAKELKMKGPRCIVVGPSSCGKTSLSAILLAYMLKENHSAFFVEADYS 147          
BLAST of Gcaud7824.t1 vs. uniprot
Match: UPI000359D65C (polyribonucleotide 5'-hydroxyl-kinase Clp1 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359D65C)

HSP 1 Score: 110 bits (276), Expect = 7.830e-26
Identity = 58/147 (39.46%), Postives = 82/147 (55.78%), Query Frame = 0
Query:    9 TAEHPARNFTLPSEHELRFEIPPDVASASLTLLTGSAELFGLALAQNKPYHLPPALNAAAFTWHGAELALRAPEHVMAYTATETPMPSYIKAHSILQSKREIARRAGIPGPRAVIVGPHDCGKTALVNILAAYCVRANRTAVVADMD 155
            T+E     F L +  ELRFE+    AS  + ++ G AE+FG  LA+NK Y        A FTWHG  + ++    V AY + ETPM +Y+  H+ ++  RE A      GPR ++VGP D GK++   IL  Y VR  R+ V+AD+D
Sbjct:    2 TSEDEGEEFRLQANSELRFEVESK-ASVEIEMVDGQAEMFGTELAKNKKYQYLSGAKVAVFTWHGCTIKVKGKTEV-AYISKETPMVTYVNTHAAMEQMRERADAENTRGPRMLVVGPQDVGKSSFCRILVNYAVRLGRSPVLADID 146          
BLAST of Gcaud7824.t1 vs. uniprot
Match: A0A3S5K2K6_ELYCH (Uncharacterized protein (Fragment) n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S5K2K6_ELYCH)

HSP 1 Score: 111 bits (277), Expect = 7.960e-26
Identity = 60/146 (41.10%), Postives = 83/146 (56.85%), Query Frame = 0
Query:   10 AEHPARNFTLPSEHELRFEIPPDVASASLTLLTGSAELFGLALAQNKPYHLPPALNAAAFTWHGAELALRAPEHVMAYTATETPMPSYIKAHSILQSKREIARRAGIPGPRAVIVGPHDCGKTALVNILAAYCVRANRTAVVADMD 155
            AE  ++ F L    ELRFE+    ASA + ++ GS+E+FG  LA+NK Y        A +TWHG  + L+    V AY +TETPM  Y+  H+ L+  R  A      GPR ++VGP D GK+ L  +L  Y VR  R+ V+AD+D
Sbjct:   38 AEEESQEFKLKVNSELRFEVEHK-ASAEIEMIEGSSEMFGTELAKNKKYTFVSGSKVAIYTWHGCVIKLKGKTEV-AYVSTETPMTVYVNTHAALEQMRNKADEDSTRGPRILVVGPTDVGKSTLCRLLTNYAVRLGRSPVLADID 181          
BLAST of Gcaud7824.t1 vs. uniprot
Match: A0A068RH08_9FUNG (mRNA cleavage and polyadenylation factor CLP1 n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RH08_9FUNG)

HSP 1 Score: 110 bits (275), Expect = 1.260e-25
Identity = 58/143 (40.56%), Postives = 81/143 (56.64%), Query Frame = 0
Query:   15 RNFTLPSEHELRFEIPPDVASASLTLLTGSAELFGLALAQNKPYHLPPALNAAAFTWHGAELALRAPEHVMAYTATETPMPSYIKAHSILQSKREIARRAGIPGPRAVIVGPHDCGKTALVNILAAYCVRANRTAVVADMDPS 157
            R   L S+HE RFE+  +     + LL G+AE+FG  +A    Y        A +TWHG  L +   E ++ YTA ETPM SY+  H  LQ  R+ A+ +G  GPR +++GPHD GKT+L  ILA+Y +R     +   +DPS
Sbjct:   10 RTVDLESDHEFRFEVEFN-KKVQIKLLKGTAEIFGTEIAVGVSYTFT-GRKVAVYTWHGCALEITG-EFLVEYTANETPMTSYLNTHLALQQMRDTAKDSGEQGPRVLVIGPHDVGKTSLCKILASYALRQGEKPIYVSLDPS 149          
BLAST of Gcaud7824.t1 vs. uniprot
Match: A0A8H7PI66_MORIS (mRNA cleavage and polyadenylation factor n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PI66_MORIS)

HSP 1 Score: 110 bits (275), Expect = 1.280e-25
Identity = 63/143 (44.06%), Postives = 82/143 (57.34%), Query Frame = 0
Query:   15 RNFTLPSEHELRFEIPPDVASASLTLLTGSAELFGLALAQNKPYHLPPALNAAAFTWHGAELALRAPEHVMAYTATETPMPSYIKAHSILQSKREIARRAGIPGPRAVIVGPHDCGKTALVNILAAYCVRANRTAVVADMDPS 157
            R + L  + ELRFE+    A+A++ LL G+AE+FG+ LA    YH       A FTWHG  + L   E  + YTA ETPM SY+  H  L+  R IA + G  GPR +I+GPHD GKT+L  IL  Y +R  R  V   +D S
Sbjct:    9 REYNLDPDSELRFEVE-FAATATVKLLNGTAEIFGVELAPGNAYHFS-GKKIAVFTWHGCSIELSG-ECSVEYTANETPMDSYLNLHLALEQMRVIASQQGENGPRVLILGPHDVGKTSLCKILLNYALRQGRRPVHVSLDCS 148          
BLAST of Gcaud7824.t1 vs. uniprot
Match: A0A8E2F887_9PEZI (mRNA cleavage and polyadenylation factor n=1 Tax=Glonium stellatum TaxID=574774 RepID=A0A8E2F887_9PEZI)

HSP 1 Score: 110 bits (274), Expect = 2.260e-25
Identity = 66/145 (45.52%), Postives = 87/145 (60.00%), Query Frame = 0
Query:   14 ARNFTLPSEHELRFEIPPDVASASLTLLTGSAELFGLALAQNK--PYHLPPALNAAAFTWHGAELALRAPEHVMAYTATETPMPSYIKAHSILQSKREIARRAGIPGPRAVIVGPHDCGKTALVNILAAYCVRANRTAVVADMDP 156
            +R   LP+  E RFE+P    S  + LL+G+AELFG  LA +   PY     + AA +TWHG  L L   E    YTA ET M SY  AH  L++ RE A+ +G  GPR ++VGP + GKT++V IL AY V+A R  VV ++DP
Sbjct:   22 SRTQDLPAGSEYRFEVPFS-RSLGVKLLSGTAELFGTELAPHTKDPYTFS-GIKAAIYTWHGCRLELSG-ETESEYTAEETQMMSYANAHFALENVRERAKASGQMGPRVLVVGPENAGKTSVVRILTAYAVKAGRQPVVVNLDP 163          
BLAST of Gcaud7824.t1 vs. uniprot
Match: A0A8C4WY19_EPTBU (Polyribonucleotide 5'-hydroxyl-kinase Clp1 n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4WY19_EPTBU)

HSP 1 Score: 108 bits (271), Expect = 4.250e-25
Identity = 65/150 (43.33%), Postives = 79/150 (52.67%), Query Frame = 0
Query:    7 AQTAEHPARNFTLPSEHELRFEIPPDVASASLTLLTGSAELFGLALAQNKPYHLPPALNAAAFTWHGAELALRAPEHVMAYTATETPMPSYIKAHSILQSKREIARRAGIP-GPRAVIVGPHDCGKTALVNILAAYCVRANRTAVVADMD 155
            A  A    + F L  E ELRFE+ P      L LL G AE+FG  L +NK Y       AA FTWHG EL L     V +YTA ETPM  Y+  H+ L+  R  A R     GPRA++VGP D GK+ LV +L  Y  R  R   + +MD
Sbjct:    4 ALQAGEAVQKFKLEKEMELRFEVEPR-QPLLLELLCGFAEVFGTELTRNKRYRFDTGAKAAVFTWHGCELQLTGRADV-SYTARETPMLFYLNVHAALEQMRRTASRGDEDRGPRAMVVGPTDVGKSTLVRLLCGYAARLGRRVTLVEMD 151          
The following BLAST results are available for this feature:
BLAST of Gcaud7824.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IFC3_9FLOR8.050e-9287.26Protein CLP1-like n=1 Tax=Gracilariopsis chorda Ta... [more]
R7QJX8_CHOCR2.150e-5867.36Pre-mRNA cleavage complex II protein Clp1, putativ... [more]
A0A167LCL9_PHYB86.750e-2841.96mRNA cleavage and polyadenylation factor CLP1 n=1 ... [more]
A0A5J4YSA3_PORPP2.890e-2643.24Protein CLP1 homolog n=1 Tax=Porphyridium purpureu... [more]
UPI000359D65C7.830e-2639.46polyribonucleotide 5'-hydroxyl-kinase Clp1 n=1 Tax... [more]
A0A3S5K2K6_ELYCH7.960e-2641.10Uncharacterized protein (Fragment) n=1 Tax=Elysia ... [more]
A0A068RH08_9FUNG1.260e-2540.56mRNA cleavage and polyadenylation factor CLP1 n=2 ... [more]
A0A8H7PI66_MORIS1.280e-2544.06mRNA cleavage and polyadenylation factor n=1 Tax=M... [more]
A0A8E2F887_9PEZI2.260e-2545.52mRNA cleavage and polyadenylation factor n=1 Tax=G... [more]
A0A8C4WY19_EPTBU4.250e-2543.33Polyribonucleotide 5'-hydroxyl-kinase Clp1 n=1 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 93..158
e-value: 1.6E-13
score: 52.6
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 117..157
IPR032324Clp1, N-terminal beta-sandwich domainPFAMPF16573CLP1_Ncoord: 18..110
e-value: 5.6E-23
score: 81.0
IPR038239Clp1, N-terminal beta-sandwich domain superfamilyGENE3D2.60.120.1030Clp1, DNA binding domaincoord: 6..92
e-value: 4.5E-20
score: 73.3
IPR045116Polyribonucleotide 5-hydroxyl-kinase Clp1/Grc3PANTHERPTHR12755CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1Pcoord: 11..157
NoneNo IPR availablePANTHERPTHR12755:SF6POLYRIBONUCLEOTIDE 5'-HYDROXYL-KINASE CLP1coord: 11..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2849_length_4562_cov_3.879669contigNODE_2849_length_4562_cov_3.879669:4091..4562 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7824.t1Gcaud7824.t1Gracilaria caudata M_176_S67 malemRNANODE_2849_length_4562_cov_3.879669 4091..4562 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7824.t1 ID=Gcaud7824.t1|Name=Gcaud7824.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=158bp
MALDDGAQTAEHPARNFTLPSEHELRFEIPPDVASASLTLLTGSAELFGL
ALAQNKPYHLPPALNAAAFTWHGAELALRAPEHVMAYTATETPMPSYIKA
HSILQSKREIARRAGIPGPRAVIVGPHDCGKTALVNILAAYCVRANRTAV
VADMDPSX
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR032324Clp1_N
IPR038239Clp1_N_sf
IPR045116Clp1/Grc3