Gcaud2236.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2236.t1
Unique Name	Gcaud2236.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	363

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2822_length_4632_cov_3.761726	contig	NODE_2822_length_4632_cov_3.761726:2263..3351 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702350.1
PFAMs	Grp1_Fun34_YaaH,SUA5,Sua5_yciO_yrdC
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00745
KEGG ko	ko:K07566
KEGG Reaction	R10463
GOs	GO:0000049,GO:0000723,GO:0002949,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006396,GO:0006399,GO:0006400,GO:0006450,GO:0006725,GO:0006807,GO:0006996,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0032200,GO:0034470,GO:0034641,GO:0034660,GO:0042162,GO:0042592,GO:0043047,GO:0043170,GO:0043412,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0060249,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098847,GO:1901360,GO:1901363
Evalue	2.22e-87
EggNOG OGs	COG0009@1\|root,KOG3051@2759\|Eukaryota
EC	2.7.7.87
Description	L-threonylcarbamoyladenylate synthase
COG category	J
BRITE	ko00000,ko01000,ko03009,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2236	Gcaud2236	Gracilaria caudata M_176_S67 male	gene	NODE_2822_length_4632_cov_3.761726 2263..3351 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2236.t1.stop1	Gcaud2236.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2822_length_4632_cov_3.761726 2263..2265 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2236.t1.CDS1	Gcaud2236.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2822_length_4632_cov_3.761726 2263..3351 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2236.t1.exon1	Gcaud2236.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2822_length_4632_cov_3.761726 2263..3351 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2236.t1.start1	Gcaud2236.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2822_length_4632_cov_3.761726 3349..3351 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2236.t1	Gcaud2236.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2822_length_4632_cov_3.761726 2263..3351 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2822_length_4632_cov_3.761726:2263..3351-
coding sequence from alignment at NODE_2822_length_4632_cov_3.761726:2263..3351-

mRNA sequence

>Gcaud2236.t1 ID=Gcaud2236.t1|Name=Gcaud2236.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=363bp
MPTMPSTSSSPPHIFCGSNELDITHAASALRAGQLLAFPTETVYGLGANA
HSPSSVAAIFDAKRRPSDNPLIVHVSSVTDIARHHLTPPLSALALRLAAS
FWPGPLTMVLPLSRHARLAAAVTAGLPSVAIRIPRHPVAAALLAKAAVPV
AAPSANLSGRPSPTSAQHVLQDLRGSIFGVVDGGKLHTDQCGLESTVVDL
TDPASPTVLRPGAVSIAQLESVTGIPFTRAKYLSAKPKAPGMKYRHYAPK
PPMRLVSSSLSEQIRSLLEQGKRVGVLADESVCERFRHMEHVAVVPCGTR
DDTESFARELYGALRAFDGEGDNAVVHVDIILAVPPSNVKDGIGEAVMNR
LSKAAAGGDLNS*

spliced messenger RNA

>Gcaud2236.t1 ID=Gcaud2236.t1|Name=Gcaud2236.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at NODE_2822_length_4632_cov_3.761726:2263..3351- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACCATGCCGTCCACATCCTCTTCCCCGCCACACATCTTCTGCGG
CTCCAACGAGCTTGACATCACACACGCCGCCTCTGCGCTACGCGCCGGTC
AGCTCCTAGCCTTCCCTACCGAAACCGTCTACGGTCTCGGCGCCAACGCA
CACAGCCCCTCCTCCGTCGCCGCCATCTTCGACGCAAAACGCAGACCATC
CGATAACCCACTAATCGTACACGTCTCATCTGTCACCGATATCGCCCGCC
ATCATCTCACCCCTCCACTGAGCGCTCTTGCGTTACGACTCGCCGCGTCG
TTTTGGCCGGGGCCGCTCACCATGGTTTTACCTCTTTCTCGCCACGCGCG
TCTTGCTGCCGCTGTCACGGCCGGTCTGCCGTCTGTTGCGATTCGAATCC
CGAGACATCCGGTGGCCGCCGCGTTGTTGGCCAAGGCGGCTGTTCCCGTG
GCCGCTCCGAGCGCTAATCTCTCCGGGCGTCCCAGTCCCACCTCCGCTCA
ACACGTGCTACAGGATCTACGTGGAAGCATCTTTGGCGTTGTGGACGGCG
GGAAGTTACACACCGATCAGTGCGGACTGGAAAGCACTGTCGTTGATCTC
ACCGACCCTGCTTCGCCTACTGTTTTGCGACCCGGCGCAGTTTCCATTGC
GCAGCTTGAAAGCGTAACTGGCATACCCTTCACACGTGCGAAATATTTGT
CCGCGAAACCAAAGGCGCCGGGAATGAAATATCGCCATTACGCGCCAAAG
CCGCCCATGCGTCTGGTTTCGAGCTCACTTTCGGAGCAAATACGCTCCCT
TTTGGAGCAAGGAAAGCGGGTGGGTGTACTTGCGGATGAATCCGTATGCG
AGCGGTTTCGGCACATGGAGCATGTGGCAGTTGTGCCGTGCGGGACTCGA
GATGATACCGAAAGTTTTGCCAGAGAGCTTTATGGCGCTTTAAGAGCGTT
TGACGGAGAGGGTGACAACGCCGTAGTACATGTGGACATTATTCTAGCGG
TTCCGCCTTCCAATGTGAAGGACGGCATAGGGGAGGCGGTCATGAACCGT
CTGAGCAAGGCAGCAGCAGGCGGTGATTTGAACTCCTGA

protein sequence of Gcaud2236.t1

>Gcaud2236.t1 ID=Gcaud2236.t1|Name=Gcaud2236.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=363bp
MPTMPSTSSSPPHIFCGSNELDITHAASALRAGQLLAFPTETVYGLGANA
HSPSSVAAIFDAKRRPSDNPLIVHVSSVTDIARHHLTPPLSALALRLAAS
FWPGPLTMVLPLSRHARLAAAVTAGLPSVAIRIPRHPVAAALLAKAAVPV
AAPSANLSGRPSPTSAQHVLQDLRGSIFGVVDGGKLHTDQCGLESTVVDL
TDPASPTVLRPGAVSIAQLESVTGIPFTRAKYLSAKPKAPGMKYRHYAPK
PPMRLVSSSLSEQIRSLLEQGKRVGVLADESVCERFRHMEHVAVVPCGTR
DDTESFARELYGALRAFDGEGDNAVVHVDIILAVPPSNVKDGIGEAVMNR
LSKAAAGGDLNS*

mRNA from alignment at NODE_2822_length_4632_cov_3.761726:2263..3351-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2236.t1 ID=Gcaud2236.t1|Name=Gcaud2236.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at NODE_2822_length_4632_cov_3.761726:2263..3351- (Gracilaria caudata M_176_S67 male)
ATGCCCACCATGCCGTCCACATCCTCTTCCCCGCCACACATCTTCTGCGG
CTCCAACGAGCTTGACATCACACACGCCGCCTCTGCGCTACGCGCCGGTC
AGCTCCTAGCCTTCCCTACCGAAACCGTCTACGGTCTCGGCGCCAACGCA
CACAGCCCCTCCTCCGTCGCCGCCATCTTCGACGCAAAACGCAGACCATC
CGATAACCCACTAATCGTACACGTCTCATCTGTCACCGATATCGCCCGCC
ATCATCTCACCCCTCCACTGAGCGCTCTTGCGTTACGACTCGCCGCGTCG
TTTTGGCCGGGGCCGCTCACCATGGTTTTACCTCTTTCTCGCCACGCGCG
TCTTGCTGCCGCTGTCACGGCCGGTCTGCCGTCTGTTGCGATTCGAATCC
CGAGACATCCGGTGGCCGCCGCGTTGTTGGCCAAGGCGGCTGTTCCCGTG
GCCGCTCCGAGCGCTAATCTCTCCGGGCGTCCCAGTCCCACCTCCGCTCA
ACACGTGCTACAGGATCTACGTGGAAGCATCTTTGGCGTTGTGGACGGCG
GGAAGTTACACACCGATCAGTGCGGACTGGAAAGCACTGTCGTTGATCTC
ACCGACCCTGCTTCGCCTACTGTTTTGCGACCCGGCGCAGTTTCCATTGC
GCAGCTTGAAAGCGTAACTGGCATACCCTTCACACGTGCGAAATATTTGT
CCGCGAAACCAAAGGCGCCGGGAATGAAATATCGCCATTACGCGCCAAAG
CCGCCCATGCGTCTGGTTTCGAGCTCACTTTCGGAGCAAATACGCTCCCT
TTTGGAGCAAGGAAAGCGGGTGGGTGTACTTGCGGATGAATCCGTATGCG
AGCGGTTTCGGCACATGGAGCATGTGGCAGTTGTGCCGTGCGGGACTCGA
GATGATACCGAAAGTTTTGCCAGAGAGCTTTATGGCGCTTTAAGAGCGTT
TGACGGAGAGGGTGACAACGCCGTAGTACATGTGGACATTATTCTAGCGG
TTCCGCCTTCCAATGTGAAGGACGGCATAGGGGAGGCGGTCATGAACCGT
CTGAGCAAGGCAGCAGCAGGCGGTGATTTGAACTCCTGA

Coding sequence (CDS) from alignment at NODE_2822_length_4632_cov_3.761726:2263..3351-

>Gcaud2236.t1 ID=Gcaud2236.t1|Name=Gcaud2236.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1089bp|location=Sequence derived from alignment at NODE_2822_length_4632_cov_3.761726:2263..3351- (Gracilaria caudata M_176_S67 male)
ATGCCCACCATGCCGTCCACATCCTCTTCCCCGCCACACATCTTCTGCGG
CTCCAACGAGCTTGACATCACACACGCCGCCTCTGCGCTACGCGCCGGTC
AGCTCCTAGCCTTCCCTACCGAAACCGTCTACGGTCTCGGCGCCAACGCA
CACAGCCCCTCCTCCGTCGCCGCCATCTTCGACGCAAAACGCAGACCATC
CGATAACCCACTAATCGTACACGTCTCATCTGTCACCGATATCGCCCGCC
ATCATCTCACCCCTCCACTGAGCGCTCTTGCGTTACGACTCGCCGCGTCG
TTTTGGCCGGGGCCGCTCACCATGGTTTTACCTCTTTCTCGCCACGCGCG
TCTTGCTGCCGCTGTCACGGCCGGTCTGCCGTCTGTTGCGATTCGAATCC
CGAGACATCCGGTGGCCGCCGCGTTGTTGGCCAAGGCGGCTGTTCCCGTG
GCCGCTCCGAGCGCTAATCTCTCCGGGCGTCCCAGTCCCACCTCCGCTCA
ACACGTGCTACAGGATCTACGTGGAAGCATCTTTGGCGTTGTGGACGGCG
GGAAGTTACACACCGATCAGTGCGGACTGGAAAGCACTGTCGTTGATCTC
ACCGACCCTGCTTCGCCTACTGTTTTGCGACCCGGCGCAGTTTCCATTGC
GCAGCTTGAAAGCGTAACTGGCATACCCTTCACACGTGCGAAATATTTGT
CCGCGAAACCAAAGGCGCCGGGAATGAAATATCGCCATTACGCGCCAAAG
CCGCCCATGCGTCTGGTTTCGAGCTCACTTTCGGAGCAAATACGCTCCCT
TTTGGAGCAAGGAAAGCGGGTGGGTGTACTTGCGGATGAATCCGTATGCG
AGCGGTTTCGGCACATGGAGCATGTGGCAGTTGTGCCGTGCGGGACTCGA
GATGATACCGAAAGTTTTGCCAGAGAGCTTTATGGCGCTTTAAGAGCGTT
TGACGGAGAGGGTGACAACGCCGTAGTACATGTGGACATTATTCTAGCGG
TTCCGCCTTCCAATGTGAAGGACGGCATAGGGGAGGCGGTCATGAACCGT
CTGAGCAAGGCAGCAGCAGGCGGTGATTTGAACTCCTGA