Gcaud2235.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2235.t1
Unique Name	Gcaud2235.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	650

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2822_length_4632_cov_3.761726	contig	NODE_2822_length_4632_cov_3.761726:154..2103 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704178.1
Preferred name	EPC1
PFAMs	EPL1,E_Pc_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11322
GOs	GO:0000122,GO:0000123,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0000902,GO:0000904,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005700,GO:0005720,GO:0005725,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010948,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016239,GO:0016241,GO:0016358,GO:0016569,GO:0016570,GO:0016573,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031090,GO:0031175,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032777,GO:0032989,GO:0032990,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0035267,GO:0036211,GO:0040011,GO:0040029,GO:0042221,GO:0042330,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0043968,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045595,GO:0045597,GO:0045786,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051147,GO:0051149,GO:0051153,GO:0051155,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070316,GO:0070317,GO:0070983,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097485,GO:0097659,GO:0120036,GO:0120039,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Evalue	1.74e-52
EggNOG OGs	KOG2261@1\|root,KOG2261@2759\|Eukaryota
Description	internal peptidyl-lysine acetylation
COG category	K
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2235	Gcaud2235	Gracilaria caudata M_176_S67 male	gene	NODE_2822_length_4632_cov_3.761726 154..2103 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2235.t1.start1	Gcaud2235.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2822_length_4632_cov_3.761726 154..156 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2235.t1.CDS1	Gcaud2235.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2822_length_4632_cov_3.761726 154..2103 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2235.t1.exon1	Gcaud2235.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2822_length_4632_cov_3.761726 154..2103 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2235.t1.stop1	Gcaud2235.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2822_length_4632_cov_3.761726 2101..2103 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2235.t1	Gcaud2235.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2822_length_4632_cov_3.761726 154..2103 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2822_length_4632_cov_3.761726:154..2103+
coding sequence from alignment at NODE_2822_length_4632_cov_3.761726:154..2103+

mRNA sequence

>Gcaud2235.t1 ID=Gcaud2235.t1|Name=Gcaud2235.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=650bp
LNKPLPIIKTSKDLRHEDDIVVNRALPAIASGVDPSEEEERHLQQALLAS
VFGSKATAVTADIPVPIVNRVQPPTIHTQFHRPAQYILFDRDDLDLIDHV
IDYDADFIDHNFAQKTQLCLDRLERAMDAMEKAQARSESPTLLSYSAMLA
ALAAPALITKPLYHHWHSRRQSRRISFLRIFQPSPDPKNHDPAVAFRPRE
RDAASGIARRMNTYDNFRKALVLRDELGQLREILLRVKERETKKLHLMAL
HMLAQRVRVTAQGGARMDAVNRAVFTFDTEPVVTYGNSNAGAVVVVPVRS
LTLPQTIAVTTRKMGVDKMSKKNRRKLKPPDKRAHKERSPSPTPDARALA
NSSASNVDKYGYDYHGNFCLKHMRYFAGGFANYGVSPYDHRVFAAATERN
TVRASAREPHAVTIPGANVKFASFGGSLRATGGKTGERPFVTTEHIARDI
LSSTPRTAALPLQPPRKMRRTIRARGRVGRGGRVMFDRVVFERQRGLRAA
SYPGNVEMGGVYTAGIPFHEAARVAAEYPRGDLGDVMLLGGGEQLRTKSL
NDDRLVQLARELMPEMEPMTKSPDDMVSARDAGETWPRHKEPPVPRRNKI
KWFEARHQVDEEAASDNEVGHNGVQVVPYKDWDKLPAYAPRNEPLVSEL*

spliced messenger RNA

>Gcaud2235.t1 ID=Gcaud2235.t1|Name=Gcaud2235.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1950bp|location=Sequence derived from alignment at NODE_2822_length_4632_cov_3.761726:154..2103+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGAACAAGCCGCTCCCAATCATCAAAACCAGCAAGGACCTCCGTCACGA
AGACGACATCGTCGTCAACCGCGCCCTGCCTGCCATCGCCTCCGGCGTCG
ATCCCTCCGAAGAAGAAGAACGTCATCTCCAACAGGCCCTTCTAGCCTCC
GTCTTCGGCTCAAAAGCCACCGCCGTCACCGCCGACATCCCCGTGCCCAT
CGTCAACCGCGTCCAACCGCCCACCATTCACACCCAATTCCACCGTCCCG
CGCAATACATTCTCTTTGACCGCGATGATCTCGATCTCATTGACCATGTC
ATCGACTACGACGCCGATTTCATCGACCATAACTTTGCCCAAAAAACCCA
ACTCTGTCTCGACCGTCTGGAACGTGCAATGGACGCCATGGAAAAAGCAC
AAGCGCGATCAGAATCTCCCACCCTACTCTCCTACTCCGCCATGCTCGCT
GCGCTTGCCGCCCCCGCCCTTATCACAAAACCGCTCTACCATCACTGGCA
CTCACGTCGTCAATCGCGCCGCATCTCGTTTCTCCGTATCTTTCAACCCT
CACCCGACCCGAAAAACCACGACCCTGCTGTCGCCTTCCGCCCCCGCGAG
CGCGACGCCGCCTCCGGCATAGCCCGTCGCATGAACACCTACGACAACTT
TCGAAAAGCACTCGTACTTCGCGATGAACTCGGACAATTACGTGAAATCC
TCCTGCGCGTCAAAGAACGAGAGACTAAAAAGTTACACTTGATGGCACTT
CACATGCTGGCACAACGCGTGCGCGTCACCGCCCAAGGTGGCGCACGCAT
GGATGCTGTCAATCGCGCCGTGTTCACCTTTGATACCGAGCCCGTCGTCA
CATACGGCAACAGCAACGCCGGCGCTGTTGTGGTGGTCCCCGTGCGATCA
CTCACCCTACCGCAAACCATTGCCGTCACAACCCGCAAAATGGGTGTGGA
CAAAATGTCCAAGAAGAACCGACGCAAACTCAAACCTCCAGACAAACGCG
CTCACAAAGAACGATCACCGTCACCCACGCCCGATGCGCGCGCACTTGCC
AATAGTTCCGCCTCCAACGTAGATAAGTATGGATATGACTATCACGGCAA
CTTTTGTCTTAAGCACATGCGTTATTTCGCTGGTGGCTTTGCGAATTACG
GCGTGTCGCCGTATGATCATCGCGTATTTGCGGCTGCCACGGAGCGGAAT
ACGGTGAGGGCGTCGGCGAGGGAGCCGCATGCAGTTACCATTCCTGGAGC
CAATGTGAAGTTTGCTTCGTTTGGTGGTTCATTGCGTGCGACGGGAGGGA
AGACGGGTGAGCGCCCATTCGTCACCACAGAGCATATTGCACGAGATATT
CTTAGTTCCACGCCGCGCACAGCTGCACTGCCGCTTCAGCCGCCTCGTAA
GATGCGTCGCACCATTCGCGCGCGGGGGCGAGTGGGACGTGGTGGTAGAG
TTATGTTTGATCGCGTTGTGTTTGAACGACAACGCGGACTGAGGGCGGCT
AGTTATCCTGGCAATGTTGAAATGGGAGGCGTGTACACGGCGGGCATTCC
GTTTCACGAGGCGGCGAGAGTGGCGGCGGAGTATCCAAGAGGTGATTTGG
GTGACGTGATGTTGCTGGGAGGTGGTGAGCAGTTGCGCACAAAGAGCTTG
AATGATGATCGACTCGTGCAGCTCGCGAGGGAACTTATGCCGGAGATGGA
GCCCATGACGAAATCGCCAGATGATATGGTGTCTGCGAGGGACGCTGGCG
AAACGTGGCCGCGGCATAAGGAGCCACCCGTACCCAGGAGAAATAAGATT
AAGTGGTTCGAGGCTAGACACCAAGTGGATGAGGAAGCAGCCAGTGATAA
TGAAGTCGGTCACAATGGTGTGCAAGTGGTGCCGTACAAGGATTGGGACA
AGTTACCCGCTTATGCGCCGAGAAACGAGCCTCTGGTCTCAGAACTGTGA

protein sequence of Gcaud2235.t1

>Gcaud2235.t1 ID=Gcaud2235.t1|Name=Gcaud2235.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=650bp
LNKPLPIIKTSKDLRHEDDIVVNRALPAIASGVDPSEEEERHLQQALLAS
VFGSKATAVTADIPVPIVNRVQPPTIHTQFHRPAQYILFDRDDLDLIDHV
IDYDADFIDHNFAQKTQLCLDRLERAMDAMEKAQARSESPTLLSYSAMLA
ALAAPALITKPLYHHWHSRRQSRRISFLRIFQPSPDPKNHDPAVAFRPRE
RDAASGIARRMNTYDNFRKALVLRDELGQLREILLRVKERETKKLHLMAL
HMLAQRVRVTAQGGARMDAVNRAVFTFDTEPVVTYGNSNAGAVVVVPVRS
LTLPQTIAVTTRKMGVDKMSKKNRRKLKPPDKRAHKERSPSPTPDARALA
NSSASNVDKYGYDYHGNFCLKHMRYFAGGFANYGVSPYDHRVFAAATERN
TVRASAREPHAVTIPGANVKFASFGGSLRATGGKTGERPFVTTEHIARDI
LSSTPRTAALPLQPPRKMRRTIRARGRVGRGGRVMFDRVVFERQRGLRAA
SYPGNVEMGGVYTAGIPFHEAARVAAEYPRGDLGDVMLLGGGEQLRTKSL
NDDRLVQLARELMPEMEPMTKSPDDMVSARDAGETWPRHKEPPVPRRNKI
KWFEARHQVDEEAASDNEVGHNGVQVVPYKDWDKLPAYAPRNEPLVSEL*

mRNA from alignment at NODE_2822_length_4632_cov_3.761726:154..2103+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2235.t1 ID=Gcaud2235.t1|Name=Gcaud2235.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1950bp|location=Sequence derived from alignment at NODE_2822_length_4632_cov_3.761726:154..2103+ (Gracilaria caudata M_176_S67 male)
CTGAACAAGCCGCTCCCAATCATCAAAACCAGCAAGGACCTCCGTCACGA
AGACGACATCGTCGTCAACCGCGCCCTGCCTGCCATCGCCTCCGGCGTCG
ATCCCTCCGAAGAAGAAGAACGTCATCTCCAACAGGCCCTTCTAGCCTCC
GTCTTCGGCTCAAAAGCCACCGCCGTCACCGCCGACATCCCCGTGCCCAT
CGTCAACCGCGTCCAACCGCCCACCATTCACACCCAATTCCACCGTCCCG
CGCAATACATTCTCTTTGACCGCGATGATCTCGATCTCATTGACCATGTC
ATCGACTACGACGCCGATTTCATCGACCATAACTTTGCCCAAAAAACCCA
ACTCTGTCTCGACCGTCTGGAACGTGCAATGGACGCCATGGAAAAAGCAC
AAGCGCGATCAGAATCTCCCACCCTACTCTCCTACTCCGCCATGCTCGCT
GCGCTTGCCGCCCCCGCCCTTATCACAAAACCGCTCTACCATCACTGGCA
CTCACGTCGTCAATCGCGCCGCATCTCGTTTCTCCGTATCTTTCAACCCT
CACCCGACCCGAAAAACCACGACCCTGCTGTCGCCTTCCGCCCCCGCGAG
CGCGACGCCGCCTCCGGCATAGCCCGTCGCATGAACACCTACGACAACTT
TCGAAAAGCACTCGTACTTCGCGATGAACTCGGACAATTACGTGAAATCC
TCCTGCGCGTCAAAGAACGAGAGACTAAAAAGTTACACTTGATGGCACTT
CACATGCTGGCACAACGCGTGCGCGTCACCGCCCAAGGTGGCGCACGCAT
GGATGCTGTCAATCGCGCCGTGTTCACCTTTGATACCGAGCCCGTCGTCA
CATACGGCAACAGCAACGCCGGCGCTGTTGTGGTGGTCCCCGTGCGATCA
CTCACCCTACCGCAAACCATTGCCGTCACAACCCGCAAAATGGGTGTGGA
CAAAATGTCCAAGAAGAACCGACGCAAACTCAAACCTCCAGACAAACGCG
CTCACAAAGAACGATCACCGTCACCCACGCCCGATGCGCGCGCACTTGCC
AATAGTTCCGCCTCCAACGTAGATAAGTATGGATATGACTATCACGGCAA
CTTTTGTCTTAAGCACATGCGTTATTTCGCTGGTGGCTTTGCGAATTACG
GCGTGTCGCCGTATGATCATCGCGTATTTGCGGCTGCCACGGAGCGGAAT
ACGGTGAGGGCGTCGGCGAGGGAGCCGCATGCAGTTACCATTCCTGGAGC
CAATGTGAAGTTTGCTTCGTTTGGTGGTTCATTGCGTGCGACGGGAGGGA
AGACGGGTGAGCGCCCATTCGTCACCACAGAGCATATTGCACGAGATATT
CTTAGTTCCACGCCGCGCACAGCTGCACTGCCGCTTCAGCCGCCTCGTAA
GATGCGTCGCACCATTCGCGCGCGGGGGCGAGTGGGACGTGGTGGTAGAG
TTATGTTTGATCGCGTTGTGTTTGAACGACAACGCGGACTGAGGGCGGCT
AGTTATCCTGGCAATGTTGAAATGGGAGGCGTGTACACGGCGGGCATTCC
GTTTCACGAGGCGGCGAGAGTGGCGGCGGAGTATCCAAGAGGTGATTTGG
GTGACGTGATGTTGCTGGGAGGTGGTGAGCAGTTGCGCACAAAGAGCTTG
AATGATGATCGACTCGTGCAGCTCGCGAGGGAACTTATGCCGGAGATGGA
GCCCATGACGAAATCGCCAGATGATATGGTGTCTGCGAGGGACGCTGGCG
AAACGTGGCCGCGGCATAAGGAGCCACCCGTACCCAGGAGAAATAAGATT
AAGTGGTTCGAGGCTAGACACCAAGTGGATGAGGAAGCAGCCAGTGATAA
TGAAGTCGGTCACAATGGTGTGCAAGTGGTGCCGTACAAGGATTGGGACA
AGTTACCCGCTTATGCGCCGAGAAACGAGCCTCTGGTCTCAGAACTGTGA

Coding sequence (CDS) from alignment at NODE_2822_length_4632_cov_3.761726:154..2103+

>Gcaud2235.t1 ID=Gcaud2235.t1|Name=Gcaud2235.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1950bp|location=Sequence derived from alignment at NODE_2822_length_4632_cov_3.761726:154..2103+ (Gracilaria caudata M_176_S67 male)
CTGAACAAGCCGCTCCCAATCATCAAAACCAGCAAGGACCTCCGTCACGA
AGACGACATCGTCGTCAACCGCGCCCTGCCTGCCATCGCCTCCGGCGTCG
ATCCCTCCGAAGAAGAAGAACGTCATCTCCAACAGGCCCTTCTAGCCTCC
GTCTTCGGCTCAAAAGCCACCGCCGTCACCGCCGACATCCCCGTGCCCAT
CGTCAACCGCGTCCAACCGCCCACCATTCACACCCAATTCCACCGTCCCG
CGCAATACATTCTCTTTGACCGCGATGATCTCGATCTCATTGACCATGTC
ATCGACTACGACGCCGATTTCATCGACCATAACTTTGCCCAAAAAACCCA
ACTCTGTCTCGACCGTCTGGAACGTGCAATGGACGCCATGGAAAAAGCAC
AAGCGCGATCAGAATCTCCCACCCTACTCTCCTACTCCGCCATGCTCGCT
GCGCTTGCCGCCCCCGCCCTTATCACAAAACCGCTCTACCATCACTGGCA
CTCACGTCGTCAATCGCGCCGCATCTCGTTTCTCCGTATCTTTCAACCCT
CACCCGACCCGAAAAACCACGACCCTGCTGTCGCCTTCCGCCCCCGCGAG
CGCGACGCCGCCTCCGGCATAGCCCGTCGCATGAACACCTACGACAACTT
TCGAAAAGCACTCGTACTTCGCGATGAACTCGGACAATTACGTGAAATCC
TCCTGCGCGTCAAAGAACGAGAGACTAAAAAGTTACACTTGATGGCACTT
CACATGCTGGCACAACGCGTGCGCGTCACCGCCCAAGGTGGCGCACGCAT
GGATGCTGTCAATCGCGCCGTGTTCACCTTTGATACCGAGCCCGTCGTCA
CATACGGCAACAGCAACGCCGGCGCTGTTGTGGTGGTCCCCGTGCGATCA
CTCACCCTACCGCAAACCATTGCCGTCACAACCCGCAAAATGGGTGTGGA
CAAAATGTCCAAGAAGAACCGACGCAAACTCAAACCTCCAGACAAACGCG
CTCACAAAGAACGATCACCGTCACCCACGCCCGATGCGCGCGCACTTGCC
AATAGTTCCGCCTCCAACGTAGATAAGTATGGATATGACTATCACGGCAA
CTTTTGTCTTAAGCACATGCGTTATTTCGCTGGTGGCTTTGCGAATTACG
GCGTGTCGCCGTATGATCATCGCGTATTTGCGGCTGCCACGGAGCGGAAT
ACGGTGAGGGCGTCGGCGAGGGAGCCGCATGCAGTTACCATTCCTGGAGC
CAATGTGAAGTTTGCTTCGTTTGGTGGTTCATTGCGTGCGACGGGAGGGA
AGACGGGTGAGCGCCCATTCGTCACCACAGAGCATATTGCACGAGATATT
CTTAGTTCCACGCCGCGCACAGCTGCACTGCCGCTTCAGCCGCCTCGTAA
GATGCGTCGCACCATTCGCGCGCGGGGGCGAGTGGGACGTGGTGGTAGAG
TTATGTTTGATCGCGTTGTGTTTGAACGACAACGCGGACTGAGGGCGGCT
AGTTATCCTGGCAATGTTGAAATGGGAGGCGTGTACACGGCGGGCATTCC
GTTTCACGAGGCGGCGAGAGTGGCGGCGGAGTATCCAAGAGGTGATTTGG
GTGACGTGATGTTGCTGGGAGGTGGTGAGCAGTTGCGCACAAAGAGCTTG
AATGATGATCGACTCGTGCAGCTCGCGAGGGAACTTATGCCGGAGATGGA
GCCCATGACGAAATCGCCAGATGATATGGTGTCTGCGAGGGACGCTGGCG
AAACGTGGCCGCGGCATAAGGAGCCACCCGTACCCAGGAGAAATAAGATT
AAGTGGTTCGAGGCTAGACACCAAGTGGATGAGGAAGCAGCCAGTGATAA
TGAAGTCGGTCACAATGGTGTGCAAGTGGTGCCGTACAAGGATTGGGACA
AGTTACCCGCTTATGCGCCGAGAAACGAGCCTCTGGTCTCAGAACTGTGA