Gcaud7968.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7968.t1
Unique NameGcaud7968.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length405
Homology
BLAST of Gcaud7968.t1 vs. uniprot
Match: A0A2V3IRV0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRV0_9FLOR)

HSP 1 Score: 370 bits (949), Expect = 2.130e-121
Identity = 207/372 (55.65%), Postives = 263/372 (70.70%), Query Frame = 0
Query:    1 MDTLFCSREGLGDLGEWNVRGFYEDKFNDPLNLNLGENMVSLITAFATSFSLILFTDIMFRITVRARNHQVSKQVVFRRHLINVFSNPVNFLSLCVNSIQ-RRKRKTANEA-ESEERNNFHRSSKRTYFLLVLIGLTTIVVDFVFIFLATNQNKRYDVKLDEIPVFEFEDRGCERVASPVRDSCLQVPLTEKAGFDTRAALQICSSYSIEVELEELRFPNSTFAMVGITILDNDGVIITVIHQELILRENVRIGVILADGGVYQGQPNVSSDAILTALSNRIQRSNVTILHTF-DGNMEDFAGN-SLPTILGKGIVKSVSVLLDVKLVNLTETDISIALDADSNEGDMMIAMLFYLLDIARSIMFPTGTGRG 368
            M T  CSR+GLG   +W++ GFYEDKFNDPLNLNL EN VSL+TA + SFSLILFTDI+FRI VRA+ +QVSKQVVFRRHL+N FSNP+N LS+ VN +Q ++   T+ E  ++ E      SSKR + LL+L+GL T+ V+F+FIFLATNQNK Y  +LDE+PVFEFEDRGCER+ASPV DSC+Q   TEKAGF+T   LQICSS ++   +E+ +   S   +V   ILD DGV + V ++E+   E   IGVIL  G VYQG  NVSS ++L ALSNR +RSN TIL TF   NM+  AG    P         + S+L+ ++ V+L ET +S  L  +S+EGD+ +AM+ YL D+ARSIMFPTGTGRG
Sbjct:   22 MATYNCSRKGLGHYSKWDLHGFYEDKFNDPLNLNLSENAVSLLTALSCSFSLILFTDIVFRIAVRAKTNQVSKQVVFRRHLLNSFSNPINLLSVLVNKLQSKQSASTSTEGTQNLEWKALTPSSKRNFTLLLLLGLLTVFVEFLFIFLATNQNKMYAFQLDEVPVFEFEDRGCERIASPVIDSCIQESWTEKAGFNTHGYLQICSSQTVSAAVEDEKLSKSN-GIVSFVILDTDGVDVIVRYREINAVERTTIGVILESGSVYQGLQNVSSKSLLFALSNRFRRSNATILDTFAQDNMDSGAGILENPPTEQNAKPDAASILVSLENVDLRETHLSHILHPNSSEGDLNLAMVIYLHDVARSIMFPTGTGRG 392          
BLAST of Gcaud7968.t1 vs. uniprot
Match: A0A2V3J1Z3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1Z3_9FLOR)

HSP 1 Score: 362 bits (929), Expect = 1.780e-118
Identity = 201/388 (51.80%), Postives = 272/388 (70.10%), Query Frame = 0
Query:    1 MDTLFCSREGLGDLGEWNVRGFYEDKFNDPLNLNLGENMVSLITAFATSFSLILFTDIMFRITVRARNHQVSKQVVFRRHLINVFSNPVNFLSLCVNSIQRRKRKTA--NEAESEERNNFHRSSKRTYFLLVLIGLTTIVVDFVFIFLATNQNKRYDVKLDEIPVFEFEDRGCERVASPVRDSCLQVPLTEKAGFDTRAALQICSSYSIEVELEELR--FPNSTFAMVGITILDNDGVIITVIHQELILRENVRIGVILADGGVYQGQPNVSSDAILTALSNRIQRSNVTILHTF--DGNMEDFAGNSLPTILGKGIVKSVSVLLDVKLVNLTETDISIALDADSNEGDMMIAMLFYLLDIARSIMFPTGTGRG--SSSEALDLSAQE 380
            M T  CS++GL +  EW++ GFYEDKFNDP N NL EN VSLITA  T+FSLILFTDIM+RI VRAR+H+VSK+ VFR HL+N FSNP+N LS  +  ++ R   +A     ++ E N   RS+KRTY    L+GL TI V+F+FIFLATNQNK YD++L E+P+FEFEDRGC+R+ASPV DSC+Q PLTEKAGFD+RA LQICS+ SI +  E +     N  + +V   +LD DGV +TV+++++ + ++  I VIL DG VYQG  NVS+ +IL+ALSNR++RSN T+L  +  D   ED +  +L      G+  + SV++D++ ++L ET  S++L  +S+E ++ IAM+ YL D+ARSIMFPTG  RG  +  E L L   E
Sbjct:   14 MKTFHCSQKGLDEDSEWDLHGFYEDKFNDPSNFNLSENAVSLITALLTAFSLILFTDIMYRIAVRARSHRVSKKAVFRYHLLNSFSNPINLLSCFIEKLRSRFSASAPVGGTQNLEWNTLSRSTKRTYTAYFLMGLLTIFVEFLFIFLATNQNKVYDLQL-EVPIFEFEDRGCDRIASPVTDSCIQQPLTEKAGFDSRAYLQICSTLSIALNPEGVASTLGNPNYGLVLFALLDTDGVDVTVMYRQINMTQSANIAVILEDGDVYQGLMNVSAKSILSALSNRLRRSNATVLDAYAKDNITEDDSAYNLSITEQIGMPDTASVIVDLENLDLRETHASLSLYPNSSEVELNIAMVLYLHDVARSIMFPTGRARGVKAKDEVLYLDEVE 400          
BLAST of Gcaud7968.t1 vs. uniprot
Match: A0A2V3J847_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J847_9FLOR)

HSP 1 Score: 267 bits (683), Expect = 9.960e-82
Identity = 164/381 (43.04%), Postives = 220/381 (57.74%), Query Frame = 0
Query:    5 FCSREGLGDLGEWNVRGFYEDKFNDPLNLNLGENMVSLITAFATSFSLILFTDIMFRITVRARNHQVSKQVVFRRHLINVFSNPVNFLSLCVNSIQRRKRKTANEAESEERNNFHRSSKRTYFLLVLIGLTTIVVDFVFIFLATNQNKRYDVKLDEIPVFEFEDRGCERVASPVRDSCLQVPLTEKAGFDTRAALQICSSYSIEVELEELRFPNSTFAMVGITI---LDNDGVIITVIHQELILRENVRIGVILADGGVYQGQPNVSSDAILTALSNRIQRSNVTILHTF-DGNMEDFAGNSLPTILG------------KGIVKSVSVLLDVKLVNLTETDISIALDADSNEGDMMIAMLF-YLLDIARSIMFPTGTGRG 368
            FCSR GL +  +W+VRGFYE+KFNDPLN NL EN VSLITA ATSFSL+LF DI+FR  VRA+ ++V+K V+ RRH++  FSNP+    L                      +  R +K TY  L  +GL T+  +FVFIFLATNQN  YDV+LD +P+FEF+DRGCE V  P  ++C+QVPLTEK GF+ R ALQICSS          R  N+T     + +   L+   V  TV ++E     N R+G +   G +Y G  + S++ I  AL +R++R+NVT+L  F + N+  F  +   T  G            +       VL DV+LV+L ET I   L  DS+  +  + ++  YL  + RSIMFPTG GRG
Sbjct:   18 FCSRPGLDEASQWSVRGFYENKFNDPLNFNLSENSVSLITAIATSFSLVLFNDIVFRALVRAKINEVNKHVILRRHVLETFSNPLTLFLLXXXXXXXXXXXXXXXXXXXXXGSSSRKAKITYAALCAMGLLTVFAEFVFIFLATNQNGVYDVQLDGVPIFEFDDRGCEFVGPPTWNACIQVPLTEKPGFNPRGALQICSSVVF-------RGDNATDGQHDVHLILALNEYMVTATVNYREWTTSMNFRMGYMNESGAMYVGMQSTSAEQIKAALLHRLERTNVTVLSAFPEENVARFGEDMESTKWGLRRPERTERQASQAQALVAGVLGDVRLVDLNETTIGSVLFQDSSSEEERVHLMHQYLQALIRSIMFPTGKGRG 391          
BLAST of Gcaud7968.t1 vs. uniprot
Match: A0A2V3ICE5_9FLOR (Uncharacterized protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICE5_9FLOR)

HSP 1 Score: 214 bits (544), Expect = 3.160e-61
Identity = 134/377 (35.54%), Postives = 211/377 (55.97%), Query Frame = 0
Query:    1 MDTLFC--SREGLGDLGEWNVRGFYEDKFNDPLNLNLGENMVSLITAFATSFSLILFTDIMFRITVRARNHQVSKQVVFRRHLINVFSNPVNFLSLCVNSIQRRKRKTANEAESEERNNFHRSSKRTYFLLVLIGLTTIVVDFVFIFLATNQNKRYDVKLDEIPVFEFEDRGCERVASPVRDSCLQVP-LTEKAGFDTRAALQICSSYSIEVELEELRFPNSTFAMVGITILDNDGVIITVIHQELILRENVRIGVILADGGVY-QGQPNVSSDAILTALSNRIQRSNVTILHTFDGNMEDFAGNSLPT-ILGKGIVKSVSVLLDVKLVNLTETDISIALD-ADSNEGDMMIAMLFYLLDIARSIMFPTGTGRGSSS 371
            M+   C  +R    DL  W+VRGFY+DKFNDP+N NLGEN VS++TA  TSFSL+LF DI+FR++VRA+N +VSK+VV RRH+++  SNP+   +  +  I+ ++    N+A   +      S K TY  LV++G   + ++F+FIFL+T Q K +DV L  +PVFEF+DRGCE V     ++C  +  + EKAGF++RA +Q C+ YS  +     +F  S  A + + I    G+  T+     +     ++GV++ D G +     N   + +   +S+R+ R+NVT+         +    S PT  +  G   ++  LLD+  +++T T +  A   +D    D    M  +L+    S++ P+G  RG  S
Sbjct:    1 MELSMCPGNRSNAADL--WDVRGFYDDKFNDPMNFNLGENTVSILTAITTSFSLLLFVDIIFRVSVRAKNGEVSKRVVLRRHIVDNCSNPITLCATVLRGIRTKRPWNRNQAFGPQLT----SGKWTYASLVVLGFVAVCMEFIFIFLSTGQKKVFDVHLGTVPVFEFKDRGCESVFPVPINTCNNMGGIAEKAGFESRAYIQACTGYSASLLKTGGKFGESGEAFISLIINRVVGITATLRDDATVFDMYNKVGVVMMDNGAFFSAMTNQGEEEVANVVSSRLNRANVTV------RTWEIVNISSPTSTVDGGRNMALLFLLDISKLDVTGTSLWNAPGVSDGPWNDPHRVMPVFLMGAINSVIVPSGQARGEYS 365          
The following BLAST results are available for this feature:
BLAST of Gcaud7968.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IRV0_9FLOR2.130e-12155.65Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J1Z3_9FLOR1.780e-11851.80Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J847_9FLOR9.960e-8243.04Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ICE5_9FLOR3.160e-6135.54Uncharacterized protein n=2 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 96..116
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..38
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 61..124
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 148..404
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 39..60
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 125..147
NoneNo IPR availableTMHMMTMhelixcoord: 42..64
NoneNo IPR availableTMHMMTMhelixcoord: 126..148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2754_length_4762_cov_6.172982contigNODE_2754_length_4762_cov_6.172982:2627..4631 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7968.t1Gcaud7968.t1Gracilaria caudata M_176_S67 malemRNANODE_2754_length_4762_cov_6.172982 2627..4631 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7968.t1 ID=Gcaud7968.t1|Name=Gcaud7968.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=405bp
MDTLFCSREGLGDLGEWNVRGFYEDKFNDPLNLNLGENMVSLITAFATSF
SLILFTDIMFRITVRARNHQVSKQVVFRRHLINVFSNPVNFLSLCVNSIQ
RRKRKTANEAESEERNNFHRSSKRTYFLLVLIGLTTIVVDFVFIFLATNQ
NKRYDVKLDEIPVFEFEDRGCERVASPVRDSCLQVPLTEKAGFDTRAALQ
ICSSYSIEVELEELRFPNSTFAMVGITILDNDGVIITVIHQELILRENVR
IGVILADGGVYQGQPNVSSDAILTALSNRIQRSNVTILHTFDGNMEDFAG
NSLPTILGKGIVKSVSVLLDVKLVNLTETDISIALDADSNEGDMMIAMLF
YLLDIARSIMFPTGTGRGSSSEALDLSAQEFLPSKSRPESFAPEHWRNFL
REHR*
back to top