Gcaud8398.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8398.t1
Unique Name	Gcaud8398.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	751

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2740_length_4811_cov_3.725000	contig	NODE_2740_length_4811_cov_3.725000:1781..4033 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707605.1
PFAMs	BET,Bromodomain,HATPase_c_3,MBD,WSD
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11721
Evalue	1.26e-32
EggNOG OGs	COG5076@1\|root,KOG1474@2759\|Eukaryota
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko01001,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8398	Gcaud8398	Gracilaria caudata M_176_S67 male	gene	NODE_2740_length_4811_cov_3.725000 1781..4033 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8398.t1.stop1	Gcaud8398.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2740_length_4811_cov_3.725000 1781..1783 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8398.t1.CDS1	Gcaud8398.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2740_length_4811_cov_3.725000 1781..4033 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8398.t1.exon1	Gcaud8398.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2740_length_4811_cov_3.725000 1781..4033 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8398.t1.start1	Gcaud8398.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2740_length_4811_cov_3.725000 4031..4033 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8398.t1	Gcaud8398.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2740_length_4811_cov_3.725000 1781..4033 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2740_length_4811_cov_3.725000:1781..4033-
coding sequence from alignment at NODE_2740_length_4811_cov_3.725000:1781..4033-

mRNA sequence

>Gcaud8398.t1 ID=Gcaud8398.t1|Name=Gcaud8398.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=751bp
LAAAKRSGRGRTRPIGRGRARSVDDSPIANGSHNATFVAPSNSTPDDPRR
IELLRRLNQITRQRSILEKQVSPPAKVNNSTFKPTSQTLPTRTTPRGDAV
PEPSSSRSRRLRRSYPEQNGDEPFRRPAKIARRAAEREPIHTNGRRHKSI
SPKRRRRELLLEEKKDVLSPSLAQDGGENPSPAAVRVAEKAMNGGANDAR
HKSRTRTISPSRVQGKTSATRDKVVSIDLSLVDDVPSKRKLDQTRADGQG
AKTTRAKPPLSTSAAGSRGSARVRTPSVLLSSHPGERGPTLPKSATPKNR
QVAFCLRIVKDFLRLKDAFGFSKPIELLWNVDQLPGYFDLITNPMDLDTV
RTRLESGYYLSTPGRKEVEEVVFDAKAFEADMRLIFENARTYNRRGDFYF
ESATRLLEKFASRMSHMPTTEQITAQAVKKTKKRKKSVSAPIDVDRPLET
KKMRNNTSGAMASDTPKSVGSKKKSKVQGATKGKVAAKTTAKKKKASPKP
EESKKDGKKSMSVEEMETRLRALRRQRAVNEAGSPASPAPGGASYLAEAK
ALYHVPMTFDDKLQLSKNVSKLPSDKLSKIVALATKNANSSMEVNHNEEI
ELDIDSLDNEVLRDMEAYVNQALRKKGKSGSGGDPNTDIFQMSNSEVVAE
MESLTAQLKKSTKGKSAALSEGNVKGNEKSFYDSDSSSDSDDSDGSGSSG
YESSSEESDSSGGQEADLLRRRRERNLAHQQAMQAAGTPLPSPSYHASGR
*

spliced messenger RNA

>Gcaud8398.t1 ID=Gcaud8398.t1|Name=Gcaud8398.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2253bp|location=Sequence derived from alignment at NODE_2740_length_4811_cov_3.725000:1781..4033- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGCTGCCGCAAAACGGAGTGGACGCGGTCGTACCAGGCCCATTGGCCG
CGGCCGCGCCAGATCTGTCGACGATTCGCCCATCGCCAATGGCTCGCACA
ATGCCACTTTCGTCGCGCCCTCCAATTCTACACCAGACGATCCGCGCCGC
ATCGAGTTGTTGAGAAGGCTGAATCAAATCACGCGTCAACGAAGCATTCT
TGAGAAACAGGTGTCGCCCCCTGCCAAGGTCAATAACAGCACGTTCAAGC
CCACTTCTCAAACGCTGCCGACACGCACCACACCGAGAGGCGATGCTGTA
CCGGAGCCTTCAAGTTCTAGGTCGCGCCGATTGCGACGTTCTTACCCTGA
GCAGAATGGCGATGAACCGTTTCGAAGACCGGCGAAAATTGCGCGACGCG
CTGCGGAGAGGGAACCGATTCATACCAATGGGCGAAGACATAAATCCATT
TCCCCCAAACGCAGGCGACGAGAACTTTTGCTCGAGGAAAAGAAGGATGT
TTTGAGCCCATCGCTAGCGCAAGACGGCGGTGAAAACCCATCGCCCGCAG
CCGTTCGCGTCGCGGAGAAGGCCATGAATGGCGGCGCCAACGATGCAAGA
CATAAGAGTAGAACACGTACCATTTCTCCATCAAGAGTACAAGGGAAGAC
TTCTGCCACCAGAGACAAAGTGGTGAGTATAGATCTGAGTCTAGTAGACG
ATGTGCCTTCCAAACGAAAGCTTGACCAAACGCGTGCGGACGGCCAGGGC
GCTAAAACTACAAGAGCAAAGCCTCCGTTGTCCACATCTGCTGCTGGAAG
TCGAGGTTCTGCGCGCGTTCGAACTCCTTCGGTTCTGCTGTCTTCTCACC
CCGGGGAGCGCGGCCCCACGTTGCCGAAGAGTGCGACGCCGAAGAACCGG
CAAGTTGCGTTTTGTCTGCGTATTGTGAAGGATTTTCTGCGCTTGAAAGA
TGCGTTCGGATTCTCAAAGCCAATTGAGTTGTTGTGGAATGTGGATCAAC
TGCCGGGCTACTTTGATCTGATCACCAACCCGATGGATCTTGACACGGTG
AGAACTAGGTTAGAGTCTGGGTACTACCTCTCCACGCCTGGCCGAAAGGA
AGTGGAGGAAGTGGTGTTTGACGCAAAGGCCTTCGAGGCTGACATGCGTT
TGATTTTTGAGAACGCTAGGACTTACAATAGACGTGGGGACTTTTACTTC
GAATCGGCGACTCGCTTACTGGAAAAGTTTGCATCGAGGATGTCTCACAT
GCCTACGACGGAGCAGATCACTGCGCAAGCAGTGAAGAAAACAAAGAAGC
GCAAGAAGAGCGTGAGCGCTCCAATTGACGTGGATCGGCCGCTCGAAACA
AAGAAGATGAGGAACAACACTTCTGGCGCAATGGCCTCGGACACACCAAA
GAGCGTTGGCAGCAAGAAGAAGAGCAAGGTTCAGGGCGCTACCAAGGGAA
AAGTTGCGGCAAAGACGACAGCAAAGAAGAAAAAAGCGTCGCCCAAGCCG
GAGGAAAGCAAGAAGGATGGAAAGAAGAGCATGAGTGTGGAGGAGATGGA
GACAAGACTGCGCGCTCTGAGGAGACAACGCGCTGTGAACGAGGCGGGTT
CACCGGCATCGCCGGCGCCTGGTGGCGCGTCGTACCTGGCAGAAGCTAAG
GCTCTGTATCACGTTCCCATGACGTTTGATGACAAGCTGCAGCTGAGCAA
GAACGTGAGCAAACTGCCGTCGGACAAACTGAGCAAAATTGTGGCGTTGG
CCACGAAGAATGCGAATTCGTCGATGGAAGTGAACCACAACGAGGAGATC
GAGTTGGATATTGATAGCTTAGACAACGAGGTGTTGCGCGACATGGAGGC
GTACGTGAATCAAGCGCTGCGTAAGAAGGGCAAGAGTGGGTCTGGCGGTG
ATCCGAACACGGATATATTTCAGATGTCAAACAGTGAAGTGGTGGCAGAG
ATGGAATCTCTTACTGCACAGTTGAAGAAGTCCACCAAGGGGAAGAGCGC
TGCGCTGTCGGAAGGGAACGTGAAGGGAAATGAAAAGTCGTTCTACGACA
GCGATTCGAGCTCGGATTCTGATGACTCTGATGGCAGCGGGAGCTCGGGG
TATGAATCTAGTTCTGAGGAGTCGGACTCGTCTGGTGGGCAGGAAGCTGA
TTTACTGCGAAGACGGAGGGAAAGAAATCTTGCTCATCAACAGGCGATGC
AGGCCGCTGGAACTCCGTTACCTAGTCCATCGTATCACGCTAGTGGAAGA
TGA

protein sequence of Gcaud8398.t1

>Gcaud8398.t1 ID=Gcaud8398.t1|Name=Gcaud8398.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=751bp
LAAAKRSGRGRTRPIGRGRARSVDDSPIANGSHNATFVAPSNSTPDDPRR
IELLRRLNQITRQRSILEKQVSPPAKVNNSTFKPTSQTLPTRTTPRGDAV
PEPSSSRSRRLRRSYPEQNGDEPFRRPAKIARRAAEREPIHTNGRRHKSI
SPKRRRRELLLEEKKDVLSPSLAQDGGENPSPAAVRVAEKAMNGGANDAR
HKSRTRTISPSRVQGKTSATRDKVVSIDLSLVDDVPSKRKLDQTRADGQG
AKTTRAKPPLSTSAAGSRGSARVRTPSVLLSSHPGERGPTLPKSATPKNR
QVAFCLRIVKDFLRLKDAFGFSKPIELLWNVDQLPGYFDLITNPMDLDTV
RTRLESGYYLSTPGRKEVEEVVFDAKAFEADMRLIFENARTYNRRGDFYF
ESATRLLEKFASRMSHMPTTEQITAQAVKKTKKRKKSVSAPIDVDRPLET
KKMRNNTSGAMASDTPKSVGSKKKSKVQGATKGKVAAKTTAKKKKASPKP
EESKKDGKKSMSVEEMETRLRALRRQRAVNEAGSPASPAPGGASYLAEAK
ALYHVPMTFDDKLQLSKNVSKLPSDKLSKIVALATKNANSSMEVNHNEEI
ELDIDSLDNEVLRDMEAYVNQALRKKGKSGSGGDPNTDIFQMSNSEVVAE
MESLTAQLKKSTKGKSAALSEGNVKGNEKSFYDSDSSSDSDDSDGSGSSG
YESSSEESDSSGGQEADLLRRRRERNLAHQQAMQAAGTPLPSPSYHASGR
*

mRNA from alignment at NODE_2740_length_4811_cov_3.725000:1781..4033-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8398.t1 ID=Gcaud8398.t1|Name=Gcaud8398.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2253bp|location=Sequence derived from alignment at NODE_2740_length_4811_cov_3.725000:1781..4033- (Gracilaria caudata M_176_S67 male)
CTGGCTGCCGCAAAACGGAGTGGACGCGGTCGTACCAGGCCCATTGGCCG
CGGCCGCGCCAGATCTGTCGACGATTCGCCCATCGCCAATGGCTCGCACA
ATGCCACTTTCGTCGCGCCCTCCAATTCTACACCAGACGATCCGCGCCGC
ATCGAGTTGTTGAGAAGGCTGAATCAAATCACGCGTCAACGAAGCATTCT
TGAGAAACAGGTGTCGCCCCCTGCCAAGGTCAATAACAGCACGTTCAAGC
CCACTTCTCAAACGCTGCCGACACGCACCACACCGAGAGGCGATGCTGTA
CCGGAGCCTTCAAGTTCTAGGTCGCGCCGATTGCGACGTTCTTACCCTGA
GCAGAATGGCGATGAACCGTTTCGAAGACCGGCGAAAATTGCGCGACGCG
CTGCGGAGAGGGAACCGATTCATACCAATGGGCGAAGACATAAATCCATT
TCCCCCAAACGCAGGCGACGAGAACTTTTGCTCGAGGAAAAGAAGGATGT
TTTGAGCCCATCGCTAGCGCAAGACGGCGGTGAAAACCCATCGCCCGCAG
CCGTTCGCGTCGCGGAGAAGGCCATGAATGGCGGCGCCAACGATGCAAGA
CATAAGAGTAGAACACGTACCATTTCTCCATCAAGAGTACAAGGGAAGAC
TTCTGCCACCAGAGACAAAGTGGTGAGTATAGATCTGAGTCTAGTAGACG
ATGTGCCTTCCAAACGAAAGCTTGACCAAACGCGTGCGGACGGCCAGGGC
GCTAAAACTACAAGAGCAAAGCCTCCGTTGTCCACATCTGCTGCTGGAAG
TCGAGGTTCTGCGCGCGTTCGAACTCCTTCGGTTCTGCTGTCTTCTCACC
CCGGGGAGCGCGGCCCCACGTTGCCGAAGAGTGCGACGCCGAAGAACCGG
CAAGTTGCGTTTTGTCTGCGTATTGTGAAGGATTTTCTGCGCTTGAAAGA
TGCGTTCGGATTCTCAAAGCCAATTGAGTTGTTGTGGAATGTGGATCAAC
TGCCGGGCTACTTTGATCTGATCACCAACCCGATGGATCTTGACACGGTG
AGAACTAGGTTAGAGTCTGGGTACTACCTCTCCACGCCTGGCCGAAAGGA
AGTGGAGGAAGTGGTGTTTGACGCAAAGGCCTTCGAGGCTGACATGCGTT
TGATTTTTGAGAACGCTAGGACTTACAATAGACGTGGGGACTTTTACTTC
GAATCGGCGACTCGCTTACTGGAAAAGTTTGCATCGAGGATGTCTCACAT
GCCTACGACGGAGCAGATCACTGCGCAAGCAGTGAAGAAAACAAAGAAGC
GCAAGAAGAGCGTGAGCGCTCCAATTGACGTGGATCGGCCGCTCGAAACA
AAGAAGATGAGGAACAACACTTCTGGCGCAATGGCCTCGGACACACCAAA
GAGCGTTGGCAGCAAGAAGAAGAGCAAGGTTCAGGGCGCTACCAAGGGAA
AAGTTGCGGCAAAGACGACAGCAAAGAAGAAAAAAGCGTCGCCCAAGCCG
GAGGAAAGCAAGAAGGATGGAAAGAAGAGCATGAGTGTGGAGGAGATGGA
GACAAGACTGCGCGCTCTGAGGAGACAACGCGCTGTGAACGAGGCGGGTT
CACCGGCATCGCCGGCGCCTGGTGGCGCGTCGTACCTGGCAGAAGCTAAG
GCTCTGTATCACGTTCCCATGACGTTTGATGACAAGCTGCAGCTGAGCAA
GAACGTGAGCAAACTGCCGTCGGACAAACTGAGCAAAATTGTGGCGTTGG
CCACGAAGAATGCGAATTCGTCGATGGAAGTGAACCACAACGAGGAGATC
GAGTTGGATATTGATAGCTTAGACAACGAGGTGTTGCGCGACATGGAGGC
GTACGTGAATCAAGCGCTGCGTAAGAAGGGCAAGAGTGGGTCTGGCGGTG
ATCCGAACACGGATATATTTCAGATGTCAAACAGTGAAGTGGTGGCAGAG
ATGGAATCTCTTACTGCACAGTTGAAGAAGTCCACCAAGGGGAAGAGCGC
TGCGCTGTCGGAAGGGAACGTGAAGGGAAATGAAAAGTCGTTCTACGACA
GCGATTCGAGCTCGGATTCTGATGACTCTGATGGCAGCGGGAGCTCGGGG
TATGAATCTAGTTCTGAGGAGTCGGACTCGTCTGGTGGGCAGGAAGCTGA
TTTACTGCGAAGACGGAGGGAAAGAAATCTTGCTCATCAACAGGCGATGC
AGGCCGCTGGAACTCCGTTACCTAGTCCATCGTATCACGCTAGTGGAAGA
TGA

Coding sequence (CDS) from alignment at NODE_2740_length_4811_cov_3.725000:1781..4033-

>Gcaud8398.t1 ID=Gcaud8398.t1|Name=Gcaud8398.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2253bp|location=Sequence derived from alignment at NODE_2740_length_4811_cov_3.725000:1781..4033- (Gracilaria caudata M_176_S67 male)
CTGGCTGCCGCAAAACGGAGTGGACGCGGTCGTACCAGGCCCATTGGCCG
CGGCCGCGCCAGATCTGTCGACGATTCGCCCATCGCCAATGGCTCGCACA
ATGCCACTTTCGTCGCGCCCTCCAATTCTACACCAGACGATCCGCGCCGC
ATCGAGTTGTTGAGAAGGCTGAATCAAATCACGCGTCAACGAAGCATTCT
TGAGAAACAGGTGTCGCCCCCTGCCAAGGTCAATAACAGCACGTTCAAGC
CCACTTCTCAAACGCTGCCGACACGCACCACACCGAGAGGCGATGCTGTA
CCGGAGCCTTCAAGTTCTAGGTCGCGCCGATTGCGACGTTCTTACCCTGA
GCAGAATGGCGATGAACCGTTTCGAAGACCGGCGAAAATTGCGCGACGCG
CTGCGGAGAGGGAACCGATTCATACCAATGGGCGAAGACATAAATCCATT
TCCCCCAAACGCAGGCGACGAGAACTTTTGCTCGAGGAAAAGAAGGATGT
TTTGAGCCCATCGCTAGCGCAAGACGGCGGTGAAAACCCATCGCCCGCAG
CCGTTCGCGTCGCGGAGAAGGCCATGAATGGCGGCGCCAACGATGCAAGA
CATAAGAGTAGAACACGTACCATTTCTCCATCAAGAGTACAAGGGAAGAC
TTCTGCCACCAGAGACAAAGTGGTGAGTATAGATCTGAGTCTAGTAGACG
ATGTGCCTTCCAAACGAAAGCTTGACCAAACGCGTGCGGACGGCCAGGGC
GCTAAAACTACAAGAGCAAAGCCTCCGTTGTCCACATCTGCTGCTGGAAG
TCGAGGTTCTGCGCGCGTTCGAACTCCTTCGGTTCTGCTGTCTTCTCACC
CCGGGGAGCGCGGCCCCACGTTGCCGAAGAGTGCGACGCCGAAGAACCGG
CAAGTTGCGTTTTGTCTGCGTATTGTGAAGGATTTTCTGCGCTTGAAAGA
TGCGTTCGGATTCTCAAAGCCAATTGAGTTGTTGTGGAATGTGGATCAAC
TGCCGGGCTACTTTGATCTGATCACCAACCCGATGGATCTTGACACGGTG
AGAACTAGGTTAGAGTCTGGGTACTACCTCTCCACGCCTGGCCGAAAGGA
AGTGGAGGAAGTGGTGTTTGACGCAAAGGCCTTCGAGGCTGACATGCGTT
TGATTTTTGAGAACGCTAGGACTTACAATAGACGTGGGGACTTTTACTTC
GAATCGGCGACTCGCTTACTGGAAAAGTTTGCATCGAGGATGTCTCACAT
GCCTACGACGGAGCAGATCACTGCGCAAGCAGTGAAGAAAACAAAGAAGC
GCAAGAAGAGCGTGAGCGCTCCAATTGACGTGGATCGGCCGCTCGAAACA
AAGAAGATGAGGAACAACACTTCTGGCGCAATGGCCTCGGACACACCAAA
GAGCGTTGGCAGCAAGAAGAAGAGCAAGGTTCAGGGCGCTACCAAGGGAA
AAGTTGCGGCAAAGACGACAGCAAAGAAGAAAAAAGCGTCGCCCAAGCCG
GAGGAAAGCAAGAAGGATGGAAAGAAGAGCATGAGTGTGGAGGAGATGGA
GACAAGACTGCGCGCTCTGAGGAGACAACGCGCTGTGAACGAGGCGGGTT
CACCGGCATCGCCGGCGCCTGGTGGCGCGTCGTACCTGGCAGAAGCTAAG
GCTCTGTATCACGTTCCCATGACGTTTGATGACAAGCTGCAGCTGAGCAA
GAACGTGAGCAAACTGCCGTCGGACAAACTGAGCAAAATTGTGGCGTTGG
CCACGAAGAATGCGAATTCGTCGATGGAAGTGAACCACAACGAGGAGATC
GAGTTGGATATTGATAGCTTAGACAACGAGGTGTTGCGCGACATGGAGGC
GTACGTGAATCAAGCGCTGCGTAAGAAGGGCAAGAGTGGGTCTGGCGGTG
ATCCGAACACGGATATATTTCAGATGTCAAACAGTGAAGTGGTGGCAGAG
ATGGAATCTCTTACTGCACAGTTGAAGAAGTCCACCAAGGGGAAGAGCGC
TGCGCTGTCGGAAGGGAACGTGAAGGGAAATGAAAAGTCGTTCTACGACA
GCGATTCGAGCTCGGATTCTGATGACTCTGATGGCAGCGGGAGCTCGGGG
TATGAATCTAGTTCTGAGGAGTCGGACTCGTCTGGTGGGCAGGAAGCTGA
TTTACTGCGAAGACGGAGGGAAAGAAATCTTGCTCATCAACAGGCGATGC
AGGCCGCTGGAACTCCGTTACCTAGTCCATCGTATCACGCTAGTGGAAGA
TGA