Gcaud1435.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1435.t1
Unique NameGcaud1435.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length118
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1082_length_14096_cov_4.305677contigNODE_1082_length_14096_cov_4.305677:343..696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1435Gcaud1435Gracilaria caudata M_176_S67 malegeneNODE_1082_length_14096_cov_4.305677 343..696 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1435.t1.start1Gcaud1435.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1082_length_14096_cov_4.305677 343..345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1435.t1.CDS1Gcaud1435.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1082_length_14096_cov_4.305677 343..696 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1435.t1.exon1Gcaud1435.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1082_length_14096_cov_4.305677 343..696 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1435.t1.stop1Gcaud1435.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1082_length_14096_cov_4.305677 694..696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1435.t1Gcaud1435.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1082_length_14096_cov_4.305677 343..696 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1435.t1 ID=Gcaud1435.t1|Name=Gcaud1435.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=118bp
MSELEFDTKLELGNPFPLSWESTEGNVLMLGAMVPPGDELELDTEFPTPV
LCVGETPKLGKLLILIGALSSADELGLSDTPKLAAVLRLGRELSSAARIG
LGKMLELGKPLPPSAEP*
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spliced messenger RNA

>Gcaud1435.t1 ID=Gcaud1435.t1|Name=Gcaud1435.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=354bp|location=Sequence derived from alignment at NODE_1082_length_14096_cov_4.305677:343..696+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGAACTGGAGTTTGATACGAAGCTTGAACTAGGTAATCCATTCCC
ACTTAGTTGGGAATCGACTGAAGGAAACGTGCTCATGCTCGGCGCCATGG
TACCTCCAGGAGACGAACTTGAACTAGATACCGAATTTCCCACACCTGTG
CTTTGCGTCGGAGAAACGCCTAAACTTGGCAAGCTGCTCATACTCATTGG
AGCACTTTCTTCGGCCGACGAACTTGGACTTAGTGACACACCCAAGCTTG
CAGCAGTGCTTAGGCTCGGGAGAGAACTCTCATCAGCGGCAAGGATTGGG
CTCGGCAAAATGCTTGAACTCGGAAAACCGCTCCCACCTAGTGCAGAACC
CTGA
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protein sequence of Gcaud1435.t1

>Gcaud1435.t1 ID=Gcaud1435.t1|Name=Gcaud1435.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=118bp
MSELEFDTKLELGNPFPLSWESTEGNVLMLGAMVPPGDELELDTEFPTPV
LCVGETPKLGKLLILIGALSSADELGLSDTPKLAAVLRLGRELSSAARIG
LGKMLELGKPLPPSAEP*
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mRNA from alignment at NODE_1082_length_14096_cov_4.305677:343..696+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1435.t1 ID=Gcaud1435.t1|Name=Gcaud1435.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=354bp|location=Sequence derived from alignment at NODE_1082_length_14096_cov_4.305677:343..696+ (Gracilaria caudata M_176_S67 male)
ATGTCAGAACTGGAGTTTGATACGAAGCTTGAACTAGGTAATCCATTCCC
ACTTAGTTGGGAATCGACTGAAGGAAACGTGCTCATGCTCGGCGCCATGG
TACCTCCAGGAGACGAACTTGAACTAGATACCGAATTTCCCACACCTGTG
CTTTGCGTCGGAGAAACGCCTAAACTTGGCAAGCTGCTCATACTCATTGG
AGCACTTTCTTCGGCCGACGAACTTGGACTTAGTGACACACCCAAGCTTG
CAGCAGTGCTTAGGCTCGGGAGAGAACTCTCATCAGCGGCAAGGATTGGG
CTCGGCAAAATGCTTGAACTCGGAAAACCGCTCCCACCTAGTGCAGAACC
CTGA
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Coding sequence (CDS) from alignment at NODE_1082_length_14096_cov_4.305677:343..696+

>Gcaud1435.t1 ID=Gcaud1435.t1|Name=Gcaud1435.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=354bp|location=Sequence derived from alignment at NODE_1082_length_14096_cov_4.305677:343..696+ (Gracilaria caudata M_176_S67 male)
ATGTCAGAACTGGAGTTTGATACGAAGCTTGAACTAGGTAATCCATTCCC
ACTTAGTTGGGAATCGACTGAAGGAAACGTGCTCATGCTCGGCGCCATGG
TACCTCCAGGAGACGAACTTGAACTAGATACCGAATTTCCCACACCTGTG
CTTTGCGTCGGAGAAACGCCTAAACTTGGCAAGCTGCTCATACTCATTGG
AGCACTTTCTTCGGCCGACGAACTTGGACTTAGTGACACACCCAAGCTTG
CAGCAGTGCTTAGGCTCGGGAGAGAACTCTCATCAGCGGCAAGGATTGGG
CTCGGCAAAATGCTTGAACTCGGAAAACCGCTCCCACCTAGTGCAGAACC
CTGA
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