Gcaud2332.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2332.t1
Unique Name	Gcaud2332.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	462

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1080_length_14143_cov_5.034515	contig	NODE_1080_length_14143_cov_5.034515:11100..12485 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7G6E1
Preferred name	CCDC25
PFAMs	DUF814,GPS,Lectin_C,PKD_channel,PLAT
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04989
KEGG TC	1.A.5.1.2
KEGG Pathway	ko04742,map04742
GOs	GO:0001581,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0007600,GO:0007606,GO:0008150,GO:0008324,GO:0009268,GO:0009581,GO:0009582,GO:0009593,GO:0009605,GO:0009612,GO:0009628,GO:0009987,GO:0010447,GO:0015075,GO:0015085,GO:0015267,GO:0015318,GO:0016020,GO:0016021,GO:0022803,GO:0022838,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0032501,GO:0032991,GO:0034220,GO:0034702,GO:0034703,GO:0042221,GO:0043235,GO:0044424,GO:0044425,GO:0044464,GO:0046873,GO:0050877,GO:0050896,GO:0050906,GO:0050907,GO:0050909,GO:0050912,GO:0050915,GO:0050982,GO:0051179,GO:0051234,GO:0051606,GO:0051716,GO:0055085,GO:0070588,GO:0070838,GO:0071214,GO:0071467,GO:0071468,GO:0071944,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0104004,GO:1902495,GO:1990351
Evalue	0.000763
EggNOG OGs	KOG3272@1\|root,KOG3272@2759\|Eukaryota
Description	Domain of unknown function (DUF814)
COG category	S
BRITE	ko00000,ko00001,ko04040

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2332	Gcaud2332	Gracilaria caudata M_176_S67 male	gene	NODE_1080_length_14143_cov_5.034515 11100..12485 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2332.t1.stop1	Gcaud2332.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1080_length_14143_cov_5.034515 11100..11102 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2332.t1.CDS1	Gcaud2332.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1080_length_14143_cov_5.034515 11100..12485 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2332.t1.exon1	Gcaud2332.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1080_length_14143_cov_5.034515 11100..12485 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2332.t1.start1	Gcaud2332.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1080_length_14143_cov_5.034515 12483..12485 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2332.t1	Gcaud2332.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1080_length_14143_cov_5.034515 11100..12485 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1080_length_14143_cov_5.034515:11100..12485-
coding sequence from alignment at NODE_1080_length_14143_cov_5.034515:11100..12485-

mRNA sequence

>Gcaud2332.t1 ID=Gcaud2332.t1|Name=Gcaud2332.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=462bp
MRSVLSCQGFLIFVGETDDENASLCRHAFPDDLWIHLSERASPHAVISIG
DLKLLSGQEDRYRRTPDGRKLLDLGPTIYESALLVKFLSDSREEDESNAV
YTRADTLLLNEANRSSGGSTYDILSGNTSHQDDDFAEMPGRVLLTRMPHF
YRIEHDEHKVLQLLARSERSGSTGNMDREYAVWKEIMLRREATSRREWYM
RRSYGEQIFQDDSDDDSEVENGEIANFDTMEQNGEHDENHDAHDDAHEDA
HDHIDDMSVEQREASNSDSEEAHKCDANEKKTEYKPKPEEQNCVSAKPTE
EVQVQRFKDMKNGENDQAEDSKTYDSKKEPMTVTEKEKKTTKPALNPLEH
DKDEKGKRNTVVQANDAKYPESNKESTVDVVEDRLAHDHDNEQDQKKNPV
KKPPCLNVVPEKRPNQDQNEKRRNVVRAVEKKTHEEQTGKAKSTSEVLEN
RILDGMENRAS*

spliced messenger RNA

>Gcaud2332.t1 ID=Gcaud2332.t1|Name=Gcaud2332.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1386bp|location=Sequence derived from alignment at NODE_1080_length_14143_cov_5.034515:11100..12485- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAAGCGTTCTCTCCTGCCAGGGGTTTCTGATATTCGTCGGCGAGAC
TGATGACGAGAATGCTTCTCTGTGTCGTCATGCATTCCCTGATGATTTAT
GGATACATTTGAGCGAGCGCGCGTCTCCTCACGCCGTTATTTCAATTGGC
GACCTTAAGCTTCTCTCAGGCCAGGAAGATCGCTATCGACGAACCCCGGA
CGGAAGAAAGTTGTTAGATCTTGGACCAACCATTTACGAGTCAGCCTTGC
TCGTCAAATTCTTATCAGACTCTCGCGAAGAGGATGAATCAAATGCTGTT
TACACTCGAGCTGACACTTTGTTGCTGAATGAGGCAAATAGAAGTTCTGG
GGGTTCAACGTATGACATTCTCTCTGGCAATACCAGCCATCAAGATGACG
ACTTCGCCGAAATGCCTGGCAGAGTGCTTCTTACCAGAATGCCACATTTT
TACCGTATAGAGCATGATGAGCACAAGGTTCTACAACTTCTAGCGCGGTC
AGAGAGGTCCGGTTCCACTGGCAATATGGATCGAGAATATGCTGTATGGA
AAGAGATAATGCTTCGTAGGGAAGCTACGAGCAGACGCGAGTGGTACATG
AGAAGGTCATACGGCGAACAAATTTTTCAGGACGATTCTGACGACGACAG
CGAGGTAGAGAACGGAGAGATTGCAAACTTTGACACTATGGAACAAAATG
GAGAACATGACGAGAACCATGACGCTCATGATGATGCCCACGAAGACGCT
CACGATCACATCGATGACATGAGCGTAGAGCAGAGAGAGGCGAGCAATTC
TGATTCTGAGGAAGCTCACAAGTGCGATGCCAATGAGAAGAAGACAGAGT
ACAAACCGAAGCCTGAAGAGCAGAATTGCGTGTCAGCGAAACCAACAGAA
GAGGTTCAAGTACAAAGATTTAAAGATATGAAGAACGGCGAAAATGATCA
AGCAGAAGACTCTAAGACTTACGACTCAAAGAAGGAGCCAATGACTGTCA
CAGAAAAGGAGAAAAAGACCACCAAACCGGCTTTGAACCCACTAGAACAT
GACAAAGACGAAAAAGGAAAACGGAATACCGTTGTCCAGGCGAATGACGC
GAAATACCCAGAGTCGAATAAAGAGTCAACTGTAGATGTCGTTGAAGACC
GGTTAGCTCATGACCATGACAATGAACAGGATCAAAAGAAGAATCCCGTG
AAGAAGCCCCCGTGCCTTAATGTCGTGCCGGAGAAGAGACCTAATCAAGA
TCAGAATGAGAAACGCAGAAATGTAGTGAGAGCTGTAGAGAAGAAAACTC
ATGAAGAACAAACTGGGAAGGCTAAGAGCACTAGCGAAGTTTTGGAAAAC
AGAATACTGGATGGAATGGAGAACAGGGCTTCGTAA

protein sequence of Gcaud2332.t1

>Gcaud2332.t1 ID=Gcaud2332.t1|Name=Gcaud2332.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=462bp
MRSVLSCQGFLIFVGETDDENASLCRHAFPDDLWIHLSERASPHAVISIG
DLKLLSGQEDRYRRTPDGRKLLDLGPTIYESALLVKFLSDSREEDESNAV
YTRADTLLLNEANRSSGGSTYDILSGNTSHQDDDFAEMPGRVLLTRMPHF
YRIEHDEHKVLQLLARSERSGSTGNMDREYAVWKEIMLRREATSRREWYM
RRSYGEQIFQDDSDDDSEVENGEIANFDTMEQNGEHDENHDAHDDAHEDA
HDHIDDMSVEQREASNSDSEEAHKCDANEKKTEYKPKPEEQNCVSAKPTE
EVQVQRFKDMKNGENDQAEDSKTYDSKKEPMTVTEKEKKTTKPALNPLEH
DKDEKGKRNTVVQANDAKYPESNKESTVDVVEDRLAHDHDNEQDQKKNPV
KKPPCLNVVPEKRPNQDQNEKRRNVVRAVEKKTHEEQTGKAKSTSEVLEN
RILDGMENRAS*

mRNA from alignment at NODE_1080_length_14143_cov_5.034515:11100..12485-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2332.t1 ID=Gcaud2332.t1|Name=Gcaud2332.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1386bp|location=Sequence derived from alignment at NODE_1080_length_14143_cov_5.034515:11100..12485- (Gracilaria caudata M_176_S67 male)
ATGCGAAGCGTTCTCTCCTGCCAGGGGTTTCTGATATTCGTCGGCGAGAC
TGATGACGAGAATGCTTCTCTGTGTCGTCATGCATTCCCTGATGATTTAT
GGATACATTTGAGCGAGCGCGCGTCTCCTCACGCCGTTATTTCAATTGGC
GACCTTAAGCTTCTCTCAGGCCAGGAAGATCGCTATCGACGAACCCCGGA
CGGAAGAAAGTTGTTAGATCTTGGACCAACCATTTACGAGTCAGCCTTGC
TCGTCAAATTCTTATCAGACTCTCGCGAAGAGGATGAATCAAATGCTGTT
TACACTCGAGCTGACACTTTGTTGCTGAATGAGGCAAATAGAAGTTCTGG
GGGTTCAACGTATGACATTCTCTCTGGCAATACCAGCCATCAAGATGACG
ACTTCGCCGAAATGCCTGGCAGAGTGCTTCTTACCAGAATGCCACATTTT
TACCGTATAGAGCATGATGAGCACAAGGTTCTACAACTTCTAGCGCGGTC
AGAGAGGTCCGGTTCCACTGGCAATATGGATCGAGAATATGCTGTATGGA
AAGAGATAATGCTTCGTAGGGAAGCTACGAGCAGACGCGAGTGGTACATG
AGAAGGTCATACGGCGAACAAATTTTTCAGGACGATTCTGACGACGACAG
CGAGGTAGAGAACGGAGAGATTGCAAACTTTGACACTATGGAACAAAATG
GAGAACATGACGAGAACCATGACGCTCATGATGATGCCCACGAAGACGCT
CACGATCACATCGATGACATGAGCGTAGAGCAGAGAGAGGCGAGCAATTC
TGATTCTGAGGAAGCTCACAAGTGCGATGCCAATGAGAAGAAGACAGAGT
ACAAACCGAAGCCTGAAGAGCAGAATTGCGTGTCAGCGAAACCAACAGAA
GAGGTTCAAGTACAAAGATTTAAAGATATGAAGAACGGCGAAAATGATCA
AGCAGAAGACTCTAAGACTTACGACTCAAAGAAGGAGCCAATGACTGTCA
CAGAAAAGGAGAAAAAGACCACCAAACCGGCTTTGAACCCACTAGAACAT
GACAAAGACGAAAAAGGAAAACGGAATACCGTTGTCCAGGCGAATGACGC
GAAATACCCAGAGTCGAATAAAGAGTCAACTGTAGATGTCGTTGAAGACC
GGTTAGCTCATGACCATGACAATGAACAGGATCAAAAGAAGAATCCCGTG
AAGAAGCCCCCGTGCCTTAATGTCGTGCCGGAGAAGAGACCTAATCAAGA
TCAGAATGAGAAACGCAGAAATGTAGTGAGAGCTGTAGAGAAGAAAACTC
ATGAAGAACAAACTGGGAAGGCTAAGAGCACTAGCGAAGTTTTGGAAAAC
AGAATACTGGATGGAATGGAGAACAGGGCTTCGTAA

Coding sequence (CDS) from alignment at NODE_1080_length_14143_cov_5.034515:11100..12485-

>Gcaud2332.t1 ID=Gcaud2332.t1|Name=Gcaud2332.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1386bp|location=Sequence derived from alignment at NODE_1080_length_14143_cov_5.034515:11100..12485- (Gracilaria caudata M_176_S67 male)
ATGCGAAGCGTTCTCTCCTGCCAGGGGTTTCTGATATTCGTCGGCGAGAC
TGATGACGAGAATGCTTCTCTGTGTCGTCATGCATTCCCTGATGATTTAT
GGATACATTTGAGCGAGCGCGCGTCTCCTCACGCCGTTATTTCAATTGGC
GACCTTAAGCTTCTCTCAGGCCAGGAAGATCGCTATCGACGAACCCCGGA
CGGAAGAAAGTTGTTAGATCTTGGACCAACCATTTACGAGTCAGCCTTGC
TCGTCAAATTCTTATCAGACTCTCGCGAAGAGGATGAATCAAATGCTGTT
TACACTCGAGCTGACACTTTGTTGCTGAATGAGGCAAATAGAAGTTCTGG
GGGTTCAACGTATGACATTCTCTCTGGCAATACCAGCCATCAAGATGACG
ACTTCGCCGAAATGCCTGGCAGAGTGCTTCTTACCAGAATGCCACATTTT
TACCGTATAGAGCATGATGAGCACAAGGTTCTACAACTTCTAGCGCGGTC
AGAGAGGTCCGGTTCCACTGGCAATATGGATCGAGAATATGCTGTATGGA
AAGAGATAATGCTTCGTAGGGAAGCTACGAGCAGACGCGAGTGGTACATG
AGAAGGTCATACGGCGAACAAATTTTTCAGGACGATTCTGACGACGACAG
CGAGGTAGAGAACGGAGAGATTGCAAACTTTGACACTATGGAACAAAATG
GAGAACATGACGAGAACCATGACGCTCATGATGATGCCCACGAAGACGCT
CACGATCACATCGATGACATGAGCGTAGAGCAGAGAGAGGCGAGCAATTC
TGATTCTGAGGAAGCTCACAAGTGCGATGCCAATGAGAAGAAGACAGAGT
ACAAACCGAAGCCTGAAGAGCAGAATTGCGTGTCAGCGAAACCAACAGAA
GAGGTTCAAGTACAAAGATTTAAAGATATGAAGAACGGCGAAAATGATCA
AGCAGAAGACTCTAAGACTTACGACTCAAAGAAGGAGCCAATGACTGTCA
CAGAAAAGGAGAAAAAGACCACCAAACCGGCTTTGAACCCACTAGAACAT
GACAAAGACGAAAAAGGAAAACGGAATACCGTTGTCCAGGCGAATGACGC
GAAATACCCAGAGTCGAATAAAGAGTCAACTGTAGATGTCGTTGAAGACC
GGTTAGCTCATGACCATGACAATGAACAGGATCAAAAGAAGAATCCCGTG
AAGAAGCCCCCGTGCCTTAATGTCGTGCCGGAGAAGAGACCTAATCAAGA
TCAGAATGAGAAACGCAGAAATGTAGTGAGAGCTGTAGAGAAGAAAACTC
ATGAAGAACAAACTGGGAAGGCTAAGAGCACTAGCGAAGTTTTGGAAAAC
AGAATACTGGATGGAATGGAGAACAGGGCTTCGTAA