Gcaud2775.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2775.t1
Unique Name	Gcaud2775.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	438

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_267_length_32960_cov_4.559859	contig	NODE_267_length_32960_cov_4.559859:13482..14795 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2775	Gcaud2775	Gracilaria caudata M_176_S67 male	gene	NODE_267_length_32960_cov_4.559859 13482..14795 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2775.t1.stop1	Gcaud2775.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_267_length_32960_cov_4.559859 13482..13484 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2775.t1.CDS1	Gcaud2775.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_267_length_32960_cov_4.559859 13482..14795 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2775.t1.exon1	Gcaud2775.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_267_length_32960_cov_4.559859 13482..14795 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2775.t1.start1	Gcaud2775.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_267_length_32960_cov_4.559859 14793..14795 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2775.t1	Gcaud2775.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_267_length_32960_cov_4.559859 13482..14795 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_267_length_32960_cov_4.559859:13482..14795-
coding sequence from alignment at NODE_267_length_32960_cov_4.559859:13482..14795-

mRNA sequence

>Gcaud2775.t1 ID=Gcaud2775.t1|Name=Gcaud2775.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=438bp
MTSLRFLSRKFMVITRLCDLSKKFNVSVFEDAKTPWRDEDIESFRGSRLI
TFPRQDHPDLQQFSSVETGTSGTIELPGFDAYDRFSVLLRRKTLTWNLQR
NSSVRKGIKRDGSFIGGTPVVNPEEVMKDYPTFEQHMRSRGQALKEHEDK
IKQFKTRYNIPHKAGEGFRVEDWTPSNSEFVTDQNWEQYGTHELFPYMMA
ATNNCYFVLRNEGEATIVRPLEPFPDIYARVARLKALEMFCIPTEHGVLV
AAPWRFAISALWFLFSYSIGVVAAIHNRKDWFDSMESFFTAITVVGITLP
AFVSLVIQEPDLIRNAIRGKKTLTSDQQVATWFGFTERDYAAAAICLNGT
FLVSAARGRFLSGKANKALSGDGYLVSAGILQHVGVLVGRSMYKRLWEAT
NRIAEEVDSFVSHLTGLERKGDQPCWTAGCMDKRLVG*

spliced messenger RNA

>Gcaud2775.t1 ID=Gcaud2775.t1|Name=Gcaud2775.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1314bp|location=Sequence derived from alignment at NODE_267_length_32960_cov_4.559859:13482..14795- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAGCCTACGGTTCCTGTCGCGAAAGTTTATGGTGATAACAAGGCT
ATGCGATCTGTCGAAAAAGTTTAATGTTTCTGTCTTTGAGGATGCAAAAA
CACCATGGCGTGACGAAGACATAGAGTCGTTTCGTGGTAGCCGTCTTATA
ACGTTTCCTCGTCAAGACCATCCCGATCTGCAACAGTTCAGCTCTGTCGA
AACCGGCACAAGTGGTACCATTGAGCTTCCGGGCTTTGATGCGTATGATC
GGTTTTCCGTGCTGCTCAGGAGGAAGACGCTCACGTGGAATCTACAACGA
AATAGCTCAGTTCGAAAAGGAATTAAACGCGACGGCTCATTCATCGGCGG
TACGCCCGTTGTAAATCCTGAGGAAGTAATGAAGGACTACCCAACGTTCG
AGCAACACATGCGCTCACGCGGGCAAGCTCTGAAGGAGCATGAAGACAAG
ATCAAGCAATTCAAAACGAGATACAATATACCTCACAAAGCAGGAGAAGG
GTTTCGTGTCGAGGACTGGACGCCCTCGAACAGTGAATTCGTGACCGATC
AAAACTGGGAGCAGTATGGCACACATGAGTTGTTTCCTTACATGATGGCA
GCAACTAACAATTGTTACTTTGTTCTTCGCAATGAAGGTGAAGCAACTAT
TGTTAGACCTCTTGAGCCTTTTCCAGATATTTACGCCCGTGTCGCCCGTC
TGAAAGCGCTAGAGATGTTTTGTATTCCCACAGAGCACGGAGTACTGGTT
GCCGCTCCGTGGCGATTTGCAATTAGTGCTTTGTGGTTTTTGTTTAGCTA
TTCCATCGGAGTGGTAGCCGCCATTCACAATCGTAAAGATTGGTTCGACA
GCATGGAATCATTCTTCACAGCCATAACCGTTGTGGGCATCACTCTGCCC
GCCTTCGTTTCGCTGGTCATTCAAGAACCTGATCTGATTAGGAACGCCAT
TCGCGGGAAAAAGACGCTCACATCAGATCAACAAGTAGCAACATGGTTCG
GTTTCACAGAACGGGACTACGCAGCTGCGGCGATTTGTCTCAACGGCACT
TTCCTCGTAAGTGCGGCTCGAGGTCGTTTTCTTTCAGGCAAAGCAAACAA
GGCACTTTCAGGAGATGGATATCTAGTATCAGCAGGAATACTTCAACATG
TGGGTGTTCTAGTTGGAAGATCCATGTACAAACGGCTATGGGAAGCTACG
AATAGAATTGCTGAAGAAGTTGATTCTTTTGTAAGCCACTTGACTGGTCT
CGAACGAAAGGGTGATCAACCCTGTTGGACAGCTGGTTGCATGGACAAAC
GACTTGTGGGTTAG

protein sequence of Gcaud2775.t1

>Gcaud2775.t1 ID=Gcaud2775.t1|Name=Gcaud2775.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=438bp
MTSLRFLSRKFMVITRLCDLSKKFNVSVFEDAKTPWRDEDIESFRGSRLI
TFPRQDHPDLQQFSSVETGTSGTIELPGFDAYDRFSVLLRRKTLTWNLQR
NSSVRKGIKRDGSFIGGTPVVNPEEVMKDYPTFEQHMRSRGQALKEHEDK
IKQFKTRYNIPHKAGEGFRVEDWTPSNSEFVTDQNWEQYGTHELFPYMMA
ATNNCYFVLRNEGEATIVRPLEPFPDIYARVARLKALEMFCIPTEHGVLV
AAPWRFAISALWFLFSYSIGVVAAIHNRKDWFDSMESFFTAITVVGITLP
AFVSLVIQEPDLIRNAIRGKKTLTSDQQVATWFGFTERDYAAAAICLNGT
FLVSAARGRFLSGKANKALSGDGYLVSAGILQHVGVLVGRSMYKRLWEAT
NRIAEEVDSFVSHLTGLERKGDQPCWTAGCMDKRLVG*

mRNA from alignment at NODE_267_length_32960_cov_4.559859:13482..14795-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2775.t1 ID=Gcaud2775.t1|Name=Gcaud2775.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1314bp|location=Sequence derived from alignment at NODE_267_length_32960_cov_4.559859:13482..14795- (Gracilaria caudata M_176_S67 male)
ATGACAAGCCTACGGTTCCTGTCGCGAAAGTTTATGGTGATAACAAGGCT
ATGCGATCTGTCGAAAAAGTTTAATGTTTCTGTCTTTGAGGATGCAAAAA
CACCATGGCGTGACGAAGACATAGAGTCGTTTCGTGGTAGCCGTCTTATA
ACGTTTCCTCGTCAAGACCATCCCGATCTGCAACAGTTCAGCTCTGTCGA
AACCGGCACAAGTGGTACCATTGAGCTTCCGGGCTTTGATGCGTATGATC
GGTTTTCCGTGCTGCTCAGGAGGAAGACGCTCACGTGGAATCTACAACGA
AATAGCTCAGTTCGAAAAGGAATTAAACGCGACGGCTCATTCATCGGCGG
TACGCCCGTTGTAAATCCTGAGGAAGTAATGAAGGACTACCCAACGTTCG
AGCAACACATGCGCTCACGCGGGCAAGCTCTGAAGGAGCATGAAGACAAG
ATCAAGCAATTCAAAACGAGATACAATATACCTCACAAAGCAGGAGAAGG
GTTTCGTGTCGAGGACTGGACGCCCTCGAACAGTGAATTCGTGACCGATC
AAAACTGGGAGCAGTATGGCACACATGAGTTGTTTCCTTACATGATGGCA
GCAACTAACAATTGTTACTTTGTTCTTCGCAATGAAGGTGAAGCAACTAT
TGTTAGACCTCTTGAGCCTTTTCCAGATATTTACGCCCGTGTCGCCCGTC
TGAAAGCGCTAGAGATGTTTTGTATTCCCACAGAGCACGGAGTACTGGTT
GCCGCTCCGTGGCGATTTGCAATTAGTGCTTTGTGGTTTTTGTTTAGCTA
TTCCATCGGAGTGGTAGCCGCCATTCACAATCGTAAAGATTGGTTCGACA
GCATGGAATCATTCTTCACAGCCATAACCGTTGTGGGCATCACTCTGCCC
GCCTTCGTTTCGCTGGTCATTCAAGAACCTGATCTGATTAGGAACGCCAT
TCGCGGGAAAAAGACGCTCACATCAGATCAACAAGTAGCAACATGGTTCG
GTTTCACAGAACGGGACTACGCAGCTGCGGCGATTTGTCTCAACGGCACT
TTCCTCGTAAGTGCGGCTCGAGGTCGTTTTCTTTCAGGCAAAGCAAACAA
GGCACTTTCAGGAGATGGATATCTAGTATCAGCAGGAATACTTCAACATG
TGGGTGTTCTAGTTGGAAGATCCATGTACAAACGGCTATGGGAAGCTACG
AATAGAATTGCTGAAGAAGTTGATTCTTTTGTAAGCCACTTGACTGGTCT
CGAACGAAAGGGTGATCAACCCTGTTGGACAGCTGGTTGCATGGACAAAC
GACTTGTGGGTTAG

Coding sequence (CDS) from alignment at NODE_267_length_32960_cov_4.559859:13482..14795-

>Gcaud2775.t1 ID=Gcaud2775.t1|Name=Gcaud2775.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1314bp|location=Sequence derived from alignment at NODE_267_length_32960_cov_4.559859:13482..14795- (Gracilaria caudata M_176_S67 male)
ATGACAAGCCTACGGTTCCTGTCGCGAAAGTTTATGGTGATAACAAGGCT
ATGCGATCTGTCGAAAAAGTTTAATGTTTCTGTCTTTGAGGATGCAAAAA
CACCATGGCGTGACGAAGACATAGAGTCGTTTCGTGGTAGCCGTCTTATA
ACGTTTCCTCGTCAAGACCATCCCGATCTGCAACAGTTCAGCTCTGTCGA
AACCGGCACAAGTGGTACCATTGAGCTTCCGGGCTTTGATGCGTATGATC
GGTTTTCCGTGCTGCTCAGGAGGAAGACGCTCACGTGGAATCTACAACGA
AATAGCTCAGTTCGAAAAGGAATTAAACGCGACGGCTCATTCATCGGCGG
TACGCCCGTTGTAAATCCTGAGGAAGTAATGAAGGACTACCCAACGTTCG
AGCAACACATGCGCTCACGCGGGCAAGCTCTGAAGGAGCATGAAGACAAG
ATCAAGCAATTCAAAACGAGATACAATATACCTCACAAAGCAGGAGAAGG
GTTTCGTGTCGAGGACTGGACGCCCTCGAACAGTGAATTCGTGACCGATC
AAAACTGGGAGCAGTATGGCACACATGAGTTGTTTCCTTACATGATGGCA
GCAACTAACAATTGTTACTTTGTTCTTCGCAATGAAGGTGAAGCAACTAT
TGTTAGACCTCTTGAGCCTTTTCCAGATATTTACGCCCGTGTCGCCCGTC
TGAAAGCGCTAGAGATGTTTTGTATTCCCACAGAGCACGGAGTACTGGTT
GCCGCTCCGTGGCGATTTGCAATTAGTGCTTTGTGGTTTTTGTTTAGCTA
TTCCATCGGAGTGGTAGCCGCCATTCACAATCGTAAAGATTGGTTCGACA
GCATGGAATCATTCTTCACAGCCATAACCGTTGTGGGCATCACTCTGCCC
GCCTTCGTTTCGCTGGTCATTCAAGAACCTGATCTGATTAGGAACGCCAT
TCGCGGGAAAAAGACGCTCACATCAGATCAACAAGTAGCAACATGGTTCG
GTTTCACAGAACGGGACTACGCAGCTGCGGCGATTTGTCTCAACGGCACT
TTCCTCGTAAGTGCGGCTCGAGGTCGTTTTCTTTCAGGCAAAGCAAACAA
GGCACTTTCAGGAGATGGATATCTAGTATCAGCAGGAATACTTCAACATG
TGGGTGTTCTAGTTGGAAGATCCATGTACAAACGGCTATGGGAAGCTACG
AATAGAATTGCTGAAGAAGTTGATTCTTTTGTAAGCCACTTGACTGGTCT
CGAACGAAAGGGTGATCAACCCTGTTGGACAGCTGGTTGCATGGACAAAC
GACTTGTGGGTTAG