Gcaud1229.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1229.t1
Unique NameGcaud1229.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length325
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2659_length_5031_cov_4.222874contigNODE_2659_length_5031_cov_4.222874:680..1654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog588596.U9TKJ4
Preferred namecpc2
PFAMsWD40
Max annot lvl4751|Fungi
KEGG koko:K14753
KEGG Pathwayko05162,map05162
GOsGO:0000003,GO:0000746,GO:0000747,GO:0001403,GO:0001932,GO:0001934,GO:0001965,GO:0003674,GO:0005080,GO:0005092,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006446,GO:0006448,GO:0006950,GO:0007154,GO:0007155,GO:0007165,GO:0007186,GO:0007346,GO:0008150,GO:0009267,GO:0009268,GO:0009405,GO:0009605,GO:0009607,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010389,GO:0010468,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0010648,GO:0015935,GO:0017148,GO:0019220,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022414,GO:0022610,GO:0022626,GO:0022627,GO:0023051,GO:0023052,GO:0023057,GO:0030234,GO:0030447,GO:0030695,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031401,GO:0031667,GO:0031668,GO:0031669,GO:0031952,GO:0031954,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0032995,GO:0033554,GO:0034198,GO:0034248,GO:0034249,GO:0036170,GO:0036176,GO:0036177,GO:0036178,GO:0036180,GO:0036244,GO:0036267,GO:0040007,GO:0042325,GO:0042327,GO:0042594,GO:0043021,GO:0043022,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044087,GO:0044182,GO:0044391,GO:0044419,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0044764,GO:0044877,GO:0045900,GO:0045937,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051248,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0060589,GO:0060733,GO:0065007,GO:0065008,GO:0065009,GO:0070783,GO:0071214,GO:0071467,GO:0071496,GO:0080090,GO:0080134,GO:0080135,GO:0098772,GO:0104004,GO:1901987,GO:1901990,GO:1902659,GO:1902660,GO:1902749,GO:1903338,GO:1990904,GO:1990928,GO:2000112,GO:2000113,GO:2000765,GO:2000766,GO:2001124,GO:2001125
Evalue9.31e-156
EggNOG OGsKOG0279@1|root,KOG0279@2759|Eukaryota,38BFC@33154|Opisthokonta,3NUKD@4751|Fungi
DescriptionGuanine nucleotide-binding protein subunit beta-like protein
COG categoryT
BRITEko00000,ko00001,ko03019,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1229Gcaud1229Gracilaria caudata M_176_S67 malegeneNODE_2659_length_5031_cov_4.222874 680..1654 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1229.t1.start1Gcaud1229.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2659_length_5031_cov_4.222874 680..682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1229.t1.CDS1Gcaud1229.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2659_length_5031_cov_4.222874 680..1654 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1229.t1.exon1Gcaud1229.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2659_length_5031_cov_4.222874 680..1654 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1229.t1.stop1Gcaud1229.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2659_length_5031_cov_4.222874 1652..1654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1229.t1Gcaud1229.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2659_length_5031_cov_4.222874 680..1654 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1229.t1 ID=Gcaud1229.t1|Name=Gcaud1229.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=325bp
MGETLSFRGYLKGHSNWVTAIAATVDPNDSDSPDIVLSASRDKTIIVWQL
TTDAEDQTSYGYPKKSLQGHGHFVSDVVLSYDGQFALSSSWDHTLRLWDL
NTGNTTRRFVGHTKDVLSVAFSADNRQIVSGSRDRTIKLWNTLGECKYTI
HDEGHSEWVSCVRFSPSTQNPLIVSCGWDKLVKVWNLTNCKLRTNLQNHT
GYLNAVTVSPDGSLCASGGKDGVAMLWDLQEGKHLYSLEANDIIHALCFS
PNRYWLCAATNSCIKIWDLESKTVVDELRDDQGEIGKKSAVPSCISLAWS
SDGSTLFSGYTDNVIRVWGVGLGR*
back to top

spliced messenger RNA

>Gcaud1229.t1 ID=Gcaud1229.t1|Name=Gcaud1229.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=975bp|location=Sequence derived from alignment at NODE_2659_length_5031_cov_4.222874:680..1654+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGAAACACTATCGTTCCGCGGATATCTGAAGGGCCATTCCAACTG
GGTCACCGCTATCGCCGCCACGGTCGACCCCAATGATAGCGATTCACCGG
ACATCGTTCTCTCCGCCTCGCGCGATAAGACCATCATCGTGTGGCAACTC
ACCACAGATGCGGAGGATCAGACCTCGTACGGATACCCGAAGAAGTCTCT
TCAGGGCCACGGCCACTTTGTGTCCGATGTTGTTTTGTCTTATGATGGCC
AGTTTGCCTTGTCATCGTCTTGGGATCACACTCTTCGTCTGTGGGATTTG
AATACCGGAAATACTACCAGACGGTTTGTGGGTCACACCAAGGACGTTCT
TTCCGTTGCTTTCTCCGCTGATAATCGTCAAATCGTGTCTGGATCGCGTG
ATCGAACCATCAAGCTGTGGAATACTCTTGGTGAATGCAAATACACCATT
CACGACGAGGGACATTCGGAATGGGTCTCATGCGTTCGCTTTTCCCCCTC
TACTCAGAACCCGCTCATTGTCTCGTGCGGATGGGATAAGTTGGTCAAGG
TGTGGAACCTTACCAACTGCAAGCTCCGCACCAACCTTCAGAATCACACT
GGCTATCTCAACGCCGTTACAGTGTCTCCAGACGGATCTCTGTGCGCCTC
GGGTGGTAAAGATGGTGTGGCCATGCTTTGGGATTTGCAAGAAGGAAAGC
ATTTGTATTCCTTGGAGGCGAACGATATCATTCACGCCCTGTGTTTCTCA
CCGAATCGCTACTGGCTTTGCGCGGCTACCAACTCTTGCATTAAGATTTG
GGATTTGGAATCTAAGACTGTTGTCGATGAGCTGCGCGATGATCAGGGGG
AGATTGGCAAGAAATCTGCTGTGCCGAGTTGCATTTCTCTTGCATGGTCA
AGCGATGGATCCACATTGTTCTCTGGATACACTGACAACGTTATTCGTGT
GTGGGGTGTTGGTCTCGGTCGCTAG
back to top

protein sequence of Gcaud1229.t1

>Gcaud1229.t1 ID=Gcaud1229.t1|Name=Gcaud1229.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=325bp
MGETLSFRGYLKGHSNWVTAIAATVDPNDSDSPDIVLSASRDKTIIVWQL
TTDAEDQTSYGYPKKSLQGHGHFVSDVVLSYDGQFALSSSWDHTLRLWDL
NTGNTTRRFVGHTKDVLSVAFSADNRQIVSGSRDRTIKLWNTLGECKYTI
HDEGHSEWVSCVRFSPSTQNPLIVSCGWDKLVKVWNLTNCKLRTNLQNHT
GYLNAVTVSPDGSLCASGGKDGVAMLWDLQEGKHLYSLEANDIIHALCFS
PNRYWLCAATNSCIKIWDLESKTVVDELRDDQGEIGKKSAVPSCISLAWS
SDGSTLFSGYTDNVIRVWGVGLGR*
back to top

mRNA from alignment at NODE_2659_length_5031_cov_4.222874:680..1654+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1229.t1 ID=Gcaud1229.t1|Name=Gcaud1229.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=975bp|location=Sequence derived from alignment at NODE_2659_length_5031_cov_4.222874:680..1654+ (Gracilaria caudata M_176_S67 male)
ATGGGAGAAACACTATCGTTCCGCGGATATCTGAAGGGCCATTCCAACTG
GGTCACCGCTATCGCCGCCACGGTCGACCCCAATGATAGCGATTCACCGG
ACATCGTTCTCTCCGCCTCGCGCGATAAGACCATCATCGTGTGGCAACTC
ACCACAGATGCGGAGGATCAGACCTCGTACGGATACCCGAAGAAGTCTCT
TCAGGGCCACGGCCACTTTGTGTCCGATGTTGTTTTGTCTTATGATGGCC
AGTTTGCCTTGTCATCGTCTTGGGATCACACTCTTCGTCTGTGGGATTTG
AATACCGGAAATACTACCAGACGGTTTGTGGGTCACACCAAGGACGTTCT
TTCCGTTGCTTTCTCCGCTGATAATCGTCAAATCGTGTCTGGATCGCGTG
ATCGAACCATCAAGCTGTGGAATACTCTTGGTGAATGCAAATACACCATT
CACGACGAGGGACATTCGGAATGGGTCTCATGCGTTCGCTTTTCCCCCTC
TACTCAGAACCCGCTCATTGTCTCGTGCGGATGGGATAAGTTGGTCAAGG
TGTGGAACCTTACCAACTGCAAGCTCCGCACCAACCTTCAGAATCACACT
GGCTATCTCAACGCCGTTACAGTGTCTCCAGACGGATCTCTGTGCGCCTC
GGGTGGTAAAGATGGTGTGGCCATGCTTTGGGATTTGCAAGAAGGAAAGC
ATTTGTATTCCTTGGAGGCGAACGATATCATTCACGCCCTGTGTTTCTCA
CCGAATCGCTACTGGCTTTGCGCGGCTACCAACTCTTGCATTAAGATTTG
GGATTTGGAATCTAAGACTGTTGTCGATGAGCTGCGCGATGATCAGGGGG
AGATTGGCAAGAAATCTGCTGTGCCGAGTTGCATTTCTCTTGCATGGTCA
AGCGATGGATCCACATTGTTCTCTGGATACACTGACAACGTTATTCGTGT
GTGGGGTGTTGGTCTCGGTCGCTAG
back to top

Coding sequence (CDS) from alignment at NODE_2659_length_5031_cov_4.222874:680..1654+

>Gcaud1229.t1 ID=Gcaud1229.t1|Name=Gcaud1229.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=975bp|location=Sequence derived from alignment at NODE_2659_length_5031_cov_4.222874:680..1654+ (Gracilaria caudata M_176_S67 male)
ATGGGAGAAACACTATCGTTCCGCGGATATCTGAAGGGCCATTCCAACTG
GGTCACCGCTATCGCCGCCACGGTCGACCCCAATGATAGCGATTCACCGG
ACATCGTTCTCTCCGCCTCGCGCGATAAGACCATCATCGTGTGGCAACTC
ACCACAGATGCGGAGGATCAGACCTCGTACGGATACCCGAAGAAGTCTCT
TCAGGGCCACGGCCACTTTGTGTCCGATGTTGTTTTGTCTTATGATGGCC
AGTTTGCCTTGTCATCGTCTTGGGATCACACTCTTCGTCTGTGGGATTTG
AATACCGGAAATACTACCAGACGGTTTGTGGGTCACACCAAGGACGTTCT
TTCCGTTGCTTTCTCCGCTGATAATCGTCAAATCGTGTCTGGATCGCGTG
ATCGAACCATCAAGCTGTGGAATACTCTTGGTGAATGCAAATACACCATT
CACGACGAGGGACATTCGGAATGGGTCTCATGCGTTCGCTTTTCCCCCTC
TACTCAGAACCCGCTCATTGTCTCGTGCGGATGGGATAAGTTGGTCAAGG
TGTGGAACCTTACCAACTGCAAGCTCCGCACCAACCTTCAGAATCACACT
GGCTATCTCAACGCCGTTACAGTGTCTCCAGACGGATCTCTGTGCGCCTC
GGGTGGTAAAGATGGTGTGGCCATGCTTTGGGATTTGCAAGAAGGAAAGC
ATTTGTATTCCTTGGAGGCGAACGATATCATTCACGCCCTGTGTTTCTCA
CCGAATCGCTACTGGCTTTGCGCGGCTACCAACTCTTGCATTAAGATTTG
GGATTTGGAATCTAAGACTGTTGTCGATGAGCTGCGCGATGATCAGGGGG
AGATTGGCAAGAAATCTGCTGTGCCGAGTTGCATTTCTCTTGCATGGTCA
AGCGATGGATCCACATTGTTCTCTGGATACACTGACAACGTTATTCGTGT
GTGGGGTGTTGGTCTCGGTCGCTAG
back to top