Gcaud847.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud847.t1
Unique NameGcaud847.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length275
Homology
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BLAST of Gcaud847.t1 vs. uniprot
Match: A0A2V3IMC1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMC1_9FLOR)

HSP 1 Score: 91.7 bits (226), Expect = 1.080e-17
Identity = 63/214 (29.44%), Postives = 107/214 (50.00%), Query Frame = 0 
Query:   64 GNHSSVDDVVQCDDTFAFRYENLQRDWQTLSGDGVMRCTSTG-VCAIARARGTQLFISDAFRLPPEAAD-----PSQQLLFLPTEVSFNATPHLSLFARRAAEAFELGLNDELDLRRRIIMGSRQGSCLFNVSGDEQTQIPDAMLGVSIAVWTLSVLFFLLALSFRRAVYFDMNNQMHWANRVRRAVDDKTEVSFVKLASEAEEDATTIYVVDK 271
            GN S  D  V+C    A+ Y+ +               +  G  C     +    + S A  LP   A+        ++ FL TE+ F+++  L +FA RA +AF   +ND  +LRRR+ +GS + +C F     + T +P  +L   +  W +++LFF+L L  RR V+FD+ N +HWA +V++ VD+  +   V   +  E++A  +YV ++
Sbjct:  131 GNVSLSDGQVRCSKKAAYFYDIVSASETKKLPVSTAEVSCKGETCVFVFEQQNSTYFSGAL-LPDIVAELRSGAVDTEMAFLKTELLFDSSEMLPVFAGRAVDAFLEQVNDPFELRRRVFLGSAKKNCPFVEEVIDGTSVPRQLLYSLLFAWIVALLFFVLCLVLRRKVFFDVGNPLHWAIQVQKRVDEAVKHDPVVTCA-TEDEALALYVSER 342
The following BLAST results are available for this feature:
BLAST of Gcaud847.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IMC1_9FLOR1.080e-1729.44Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..199
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 221..274
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..15
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 200..220
NoneNo IPR availableTMHMMTMhelixcoord: 200..222

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2645_length_5077_cov_7.393903contigNODE_2645_length_5077_cov_7.393903:3849..4673 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud847.t1Gcaud847.t1Gracilaria caudata M_176_S67 malemRNANODE_2645_length_5077_cov_7.393903 3849..4673 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud847.t1 ID=Gcaud847.t1|Name=Gcaud847.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=275bp
MLLFVLIELLASANTVTVFPLQTFRQRCTQFSPLLPRRSDVSGAEIALYS
CLHVNRSQFSVFSGNHSSVDDVVQCDDTFAFRYENLQRDWQTLSGDGVMR
CTSTGVCAIARARGTQLFISDAFRLPPEAADPSQQLLFLPTEVSFNATPH
LSLFARRAAEAFELGLNDELDLRRRIIMGSRQGSCLFNVSGDEQTQIPDA
MLGVSIAVWTLSVLFFLLALSFRRAVYFDMNNQMHWANRVRRAVDDKTEV
SFVKLASEAEEDATTIYVVDKSEM*
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