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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud8496.t1.stop1 | Gcaud8496.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_2633_length_5108_cov_3.896552 3332..3334 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud8496.t1 ID=Gcaud8496.t1|Name=Gcaud8496.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=142bp
XPQYDQRPLPTSTPPNLLAHVNFTSTLKPPCPRNGQFSSAALVQSFLTHV
SERSNAHWLQLSLACEQKARLPPRTRIVGLALFDGIAQSPTFRFPIPSDL
FVSVLESPFATGNPDAALQSNGHVPIPENGTDQFPSETKIG* back to topspliced messenger RNA >Gcaud8496.t1 ID=Gcaud8496.t1|Name=Gcaud8496.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=425bp|location=Sequence derived from alignment at NODE_2633_length_5108_cov_3.896552:1885..3334+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
TCCCCCAATATGACCAACGTCCCCTTCCGACCTCCACTCCCCCGAACTTA
TTGGCTCATGTCAACTTCACTTCCACCTTGAAACCACCGTGTCCACGAAA
TGGACAGTTTTCATCAGCAGCTCTTGTCCAAAGcttccttacccatgtgt
ccgagcgctcaaatgcccattggTTGCAGCTTAGTCTTGCATGCGAACAA
AAAGCGCGTCTACCACCTCGAACGCGCATAGTCGGTTTGGCTCTGTTCGA
CGGAATAGCGCAGTCTCCGACTTTCAGATTCCCCATCCCATCCGACTTGT
TTGTTTCGGTCTTGGAAAGTCCATTTGCTACCGGCAACCCCGACGCTGCT
CTACAATCAAACGgccatgttccGATTCCAGAGAACGGCACAGACCAGTT
TCCCAGTGAAACCAAAATCGGATAG back to topprotein sequence of Gcaud8496.t1 >Gcaud8496.t1 ID=Gcaud8496.t1|Name=Gcaud8496.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=142bp
XPQYDQRPLPTSTPPNLLAHVNFTSTLKPPCPRNGQFSSAALVQSFLTHV
SERSNAHWLQLSLACEQKARLPPRTRIVGLALFDGIAQSPTFRFPIPSDL
FVSVLESPFATGNPDAALQSNGHVPIPENGTDQFPSETKIG* back to topmRNA from alignment at NODE_2633_length_5108_cov_3.896552:1885..3334+ Legend: CDSpolypeptideexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud8496.t1 ID=Gcaud8496.t1|Name=Gcaud8496.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1450bp|location=Sequence derived from alignment at NODE_2633_length_5108_cov_3.896552:1885..3334+ (Gracilaria caudata M_176_S67 male)
TCCCCCAATATGACCAACGTCCCCTTCCGACCTCCACTCCCCCGAACTTA
TTGGCTCATGTCAACTTCACTTCCACCTTGAAACCACCGTGTCCACGAAA
TGGACAGTTTTCATCAGCAGCTCTTGTCCAAAGGTGAGTTTATATCATTT
GTCGAAGTGTGAGAGAGTACTAACATTGCGTTGCTTCCTTCTAtcgataa
accagcttccttacccatgtgtccgagcgctcaaatgcccattgggtgct
tcgcaaaatgctcttagaccgcatcgttgtatttggccatagttttggcg
gagtggctgctctcttcctcgtgtcaggacaatgtgagaaTATCAACCCC
ATGGATGTGTCACAGTTGCAGCTTAGTCTTGCATGCGAACAAAAAGCGCG
TCTACCACCTCGAACGCGCATAGTCGGTTTGGCTCTGTTCGACGGAATGT
ACGTCAAAGTTCAAAGGCATTCGCATCGTTACTTCATTTCATCACGCTTC
ACATCGCCATGACCACATTTCGTTTTCTTTGTTCTTGCTCCGTACTAACT
TCTAACTGTTCTTATCCATCAACAGAGCGCAGTCTCCGACTTTCAGATTC
CCCATCCCATCCGACTTGTTTGTTTCGGTCTTGGAAAGTCCATTTGCTAC
CGGCAACCCCGACGCTGCTCTACAATCAAACGGTAACTTAGTACAAGCTC
TCATTTCTGATGTTAACCATTTTGGACCAAACGACTTCACCAATGCAACC
ATGTCACCTCGCTGTgcttttcctcgacctcttgaggccatgttccgtac
ggatttccgaacacagcgcaccgccatttcggcaatcgccacgatcgtca
gccgaagctacctcgtCTTTTTCAAGGGGAGAAACGAGAGCATACTTACA
CAGATACCCAATGCCAATTCCCGAGTGGAGACGTTAAGTATTAGCTGACG
ATAGCACCGCGTAATCCATTATTCTGGAAGCACCGTTTGAATTAAGATCC
GGTTCGTTCACTCTAGACAAGGGTGTGTCTTTTGTGCCAAATGATTCTCA
GGCATTCCCATTATTCATTCATCAATTTCGCTCCACCTTATTACAAGAGT
TGATCTGCTGTTGTGTGACGCATCAAATTCTCGTTTGTGCCCTGTAGCTC
CCTTCGATGACGCATGTACCTTCGGTAAAACCCAAACTGGAGAACTTTCA
AGGCTGAATCCGAGGGTGAGAAACATCACGAACTGAGAAGCGCTGAGCAA
TATAGAACTCAAACCTGTAGGGGCGGCTTCACCTTGATGCCCATTCGGTT
CACTCTTGCATATCGGTATAGAAGGATTGCAATGTAACCTTAGCCTCCGT
GGATTCAAGCCACATCCGCCAACTCATTCGTTCTTCTACGCTTTACAGGA
TTCCAGAGAACGGCACAGACCAGTTTCCCAGTGAAACCAAAATCGGATAG
back to topCoding sequence (CDS) from alignment at NODE_2633_length_5108_cov_3.896552:1885..3334+ >Gcaud8496.t1 ID=Gcaud8496.t1|Name=Gcaud8496.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=425bp|location=Sequence derived from alignment at NODE_2633_length_5108_cov_3.896552:1885..3334+ (Gracilaria caudata M_176_S67 male)
TCCCCCAATATGACCAACGTCCCCTTCCGACCTCCACTCCCCCGAACTTA
TTGGCTCATGTCAACTTCACTTCCACCTTGAAACCACCGTGTCCACGAAA
TGGACAGTTTTCATCAGCAGCTCTTGTCCAAAGcttccttacccatgtgt
ccgagcgctcaaatgcccattggTTGCAGCTTAGTCTTGCATGCGAACAA
AAAGCGCGTCTACCACCTCGAACGCGCATAGTCGGTTTGGCTCTGTTCGA
CGGAATAGCGCAGTCTCCGACTTTCAGATTCCCCATCCCATCCGACTTGT
TTGTTTCGGTCTTGGAAAGTCCATTTGCTACCGGCAACCCCGACGCTGCT
CTACAATCAAACGgccatgttccGATTCCAGAGAACGGCACAGACCAGTT
TCCCAGTGAAACCAAAATCGGATAG back to top
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