Gcaud3519.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3519.t1
Unique Name	Gcaud3519.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	367

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_25_length_75543_cov_4.432116	contig	NODE_25_length_75543_cov_4.432116:40999..42099 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7739.XP_002587418.1
PFAMs	C2
Max annot lvl	33208\|Metazoa
Evalue	2.08e-09
EggNOG OGs	KOG1327@1\|root,KOG1327@2759\|Eukaryota,3ABBM@33154\|Opisthokonta,3BV45@33208\|Metazoa,3DBCN@33213\|Bilateria,48GVD@7711\|Chordata
Description	C2 domain
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3519	Gcaud3519	Gracilaria caudata M_176_S67 male	gene	NODE_25_length_75543_cov_4.432116 40999..42099 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3519.t1.start1	Gcaud3519.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_25_length_75543_cov_4.432116 40999..41001 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3519.t1.CDS1	Gcaud3519.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_25_length_75543_cov_4.432116 40999..42099 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3519.t1.exon1	Gcaud3519.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_25_length_75543_cov_4.432116 40999..42099 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3519.t1.stop1	Gcaud3519.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_25_length_75543_cov_4.432116 42097..42099 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3519.t1	Gcaud3519.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_25_length_75543_cov_4.432116 40999..42099 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_25_length_75543_cov_4.432116:40999..42099+
coding sequence from alignment at NODE_25_length_75543_cov_4.432116:40999..42099+

mRNA sequence

>Gcaud3519.t1 ID=Gcaud3519.t1|Name=Gcaud3519.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=367bp
MSDIMHKSISEHTLSSVPSVDDDNMSVDSDMTAASNLTVTRTITRLEDFP
KHKPPPIGTVLEEETPKPVQLIVEFLGGSTVGSDSTREYIDALYSEPMEV
SVECQFLPKIDLFSNTDPFVIMHMRDTPHEKWRQIGRTEALTNCHFPRFV
TKFSFTALPDQDMDKELLVKVYGKGSMKKAIPLGHAMCSVWDIVVAPGQC
KVMKMDSINQKKDTWVILSGDTKRQRGADRIVNINVKFDKSAKPRAKTFF
LLNRSLKKARWTPVFRSESHASPNREFNTATTTYADLFGAEESKPMRLEF
YQKRSAIDPKLIGFVQVSVKQLMDMEEGKVLQWWSGQDGTAPGLVVLAKK
EITDENIDLWFAVTNE*

spliced messenger RNA

>Gcaud3519.t1 ID=Gcaud3519.t1|Name=Gcaud3519.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:40999..42099+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGACATTATGCACAAATCCATCTCGGAGCACACGCTCAGCTCTGT
GCCGTCCGTTGACGATGATAATATGTCGGTCGATTCCGACATGACCGCCG
CGTCCAATCTCACTGTTACGCGCACCATCACACGCCTGGAGGACTTTCCA
AAGCACAAGCCGCCACCAATCGGTACCGTGCTGGAGGAGGAGACCCCCAA
ACCGGTACAGCTCATCGTCGAGTTTTTGGGCGGTAGCACTGTCGGCTCTG
ATAGCACGCGCGAGTACATTGATGCGCTCTATTCAGAGCCTATGGAAGTC
TCTGTTGAATGCCAGTTTCTGCCCAAGATTGACTTATTTTCGAACACTGA
TCCCTTCGTAATCATGCACATGCGAGACACTCCGCACGAGAAATGGCGAC
AAATCGGTCGAACTGAGGCGCTCACCAACTGTCATTTTCCGCGTTTCGTC
ACCAAGTTTTCCTTCACTGCGCTGCCTGACCAGGACATGGACAAGGAACT
GCTTGTCAAGGTGTATGGCAAGGGTTCTATGAAAAAGGCCATCCCTCTTG
GTCATGCCATGTGTTCGGTGTGGGATATTGTGGTGGCACCCGGCCAATGT
AAGGTGATGAAGATGGACTCCATCAATCAGAAGAAGGACACATGGGTCAT
TCTCTCCGGAGATACCAAACGCCAGCGCGGAGCGGACCGAATCGTCAACA
TCAATGTCAAATTCGACAAATCAGCGAAACCGCGCGCAAAGACGTTCTTC
CTCTTGAACCGTTCGTTGAAGAAAGCCAGGTGGACGCCTGTATTCCGCTC
CGAGAGCCATGCGAGTCCAAACCGCGAGTTTAACACCGCCACAACCACGT
ACGCTGACTTGTTCGGTGCCGAGGAGAGCAAACCGATGAGGCTTGAGTTC
TATCAAAAGAGAAGTGCCATAGACCCCAAATTGATCGGTTTCGTACAGGT
GTCTGTGAAGCAACTGATGGACATGGAGGAGGGTAAGGTTTTGCAATGGT
GGTCTGGACAGGATGGAACTGCGCCTGGATTGGTGGTACTTGCGAAGAAG
GAGATCACGGACGAGAATATAGACCTCTGGTTCGCAGTGACTAATGAGTA
G

protein sequence of Gcaud3519.t1

>Gcaud3519.t1 ID=Gcaud3519.t1|Name=Gcaud3519.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=367bp
MSDIMHKSISEHTLSSVPSVDDDNMSVDSDMTAASNLTVTRTITRLEDFP
KHKPPPIGTVLEEETPKPVQLIVEFLGGSTVGSDSTREYIDALYSEPMEV
SVECQFLPKIDLFSNTDPFVIMHMRDTPHEKWRQIGRTEALTNCHFPRFV
TKFSFTALPDQDMDKELLVKVYGKGSMKKAIPLGHAMCSVWDIVVAPGQC
KVMKMDSINQKKDTWVILSGDTKRQRGADRIVNINVKFDKSAKPRAKTFF
LLNRSLKKARWTPVFRSESHASPNREFNTATTTYADLFGAEESKPMRLEF
YQKRSAIDPKLIGFVQVSVKQLMDMEEGKVLQWWSGQDGTAPGLVVLAKK
EITDENIDLWFAVTNE*

mRNA from alignment at NODE_25_length_75543_cov_4.432116:40999..42099+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3519.t1 ID=Gcaud3519.t1|Name=Gcaud3519.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:40999..42099+ (Gracilaria caudata M_176_S67 male)
ATGTCGGACATTATGCACAAATCCATCTCGGAGCACACGCTCAGCTCTGT
GCCGTCCGTTGACGATGATAATATGTCGGTCGATTCCGACATGACCGCCG
CGTCCAATCTCACTGTTACGCGCACCATCACACGCCTGGAGGACTTTCCA
AAGCACAAGCCGCCACCAATCGGTACCGTGCTGGAGGAGGAGACCCCCAA
ACCGGTACAGCTCATCGTCGAGTTTTTGGGCGGTAGCACTGTCGGCTCTG
ATAGCACGCGCGAGTACATTGATGCGCTCTATTCAGAGCCTATGGAAGTC
TCTGTTGAATGCCAGTTTCTGCCCAAGATTGACTTATTTTCGAACACTGA
TCCCTTCGTAATCATGCACATGCGAGACACTCCGCACGAGAAATGGCGAC
AAATCGGTCGAACTGAGGCGCTCACCAACTGTCATTTTCCGCGTTTCGTC
ACCAAGTTTTCCTTCACTGCGCTGCCTGACCAGGACATGGACAAGGAACT
GCTTGTCAAGGTGTATGGCAAGGGTTCTATGAAAAAGGCCATCCCTCTTG
GTCATGCCATGTGTTCGGTGTGGGATATTGTGGTGGCACCCGGCCAATGT
AAGGTGATGAAGATGGACTCCATCAATCAGAAGAAGGACACATGGGTCAT
TCTCTCCGGAGATACCAAACGCCAGCGCGGAGCGGACCGAATCGTCAACA
TCAATGTCAAATTCGACAAATCAGCGAAACCGCGCGCAAAGACGTTCTTC
CTCTTGAACCGTTCGTTGAAGAAAGCCAGGTGGACGCCTGTATTCCGCTC
CGAGAGCCATGCGAGTCCAAACCGCGAGTTTAACACCGCCACAACCACGT
ACGCTGACTTGTTCGGTGCCGAGGAGAGCAAACCGATGAGGCTTGAGTTC
TATCAAAAGAGAAGTGCCATAGACCCCAAATTGATCGGTTTCGTACAGGT
GTCTGTGAAGCAACTGATGGACATGGAGGAGGGTAAGGTTTTGCAATGGT
GGTCTGGACAGGATGGAACTGCGCCTGGATTGGTGGTACTTGCGAAGAAG
GAGATCACGGACGAGAATATAGACCTCTGGTTCGCAGTGACTAATGAGTA
G

Coding sequence (CDS) from alignment at NODE_25_length_75543_cov_4.432116:40999..42099+

>Gcaud3519.t1 ID=Gcaud3519.t1|Name=Gcaud3519.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1101bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:40999..42099+ (Gracilaria caudata M_176_S67 male)
ATGTCGGACATTATGCACAAATCCATCTCGGAGCACACGCTCAGCTCTGT
GCCGTCCGTTGACGATGATAATATGTCGGTCGATTCCGACATGACCGCCG
CGTCCAATCTCACTGTTACGCGCACCATCACACGCCTGGAGGACTTTCCA
AAGCACAAGCCGCCACCAATCGGTACCGTGCTGGAGGAGGAGACCCCCAA
ACCGGTACAGCTCATCGTCGAGTTTTTGGGCGGTAGCACTGTCGGCTCTG
ATAGCACGCGCGAGTACATTGATGCGCTCTATTCAGAGCCTATGGAAGTC
TCTGTTGAATGCCAGTTTCTGCCCAAGATTGACTTATTTTCGAACACTGA
TCCCTTCGTAATCATGCACATGCGAGACACTCCGCACGAGAAATGGCGAC
AAATCGGTCGAACTGAGGCGCTCACCAACTGTCATTTTCCGCGTTTCGTC
ACCAAGTTTTCCTTCACTGCGCTGCCTGACCAGGACATGGACAAGGAACT
GCTTGTCAAGGTGTATGGCAAGGGTTCTATGAAAAAGGCCATCCCTCTTG
GTCATGCCATGTGTTCGGTGTGGGATATTGTGGTGGCACCCGGCCAATGT
AAGGTGATGAAGATGGACTCCATCAATCAGAAGAAGGACACATGGGTCAT
TCTCTCCGGAGATACCAAACGCCAGCGCGGAGCGGACCGAATCGTCAACA
TCAATGTCAAATTCGACAAATCAGCGAAACCGCGCGCAAAGACGTTCTTC
CTCTTGAACCGTTCGTTGAAGAAAGCCAGGTGGACGCCTGTATTCCGCTC
CGAGAGCCATGCGAGTCCAAACCGCGAGTTTAACACCGCCACAACCACGT
ACGCTGACTTGTTCGGTGCCGAGGAGAGCAAACCGATGAGGCTTGAGTTC
TATCAAAAGAGAAGTGCCATAGACCCCAAATTGATCGGTTTCGTACAGGT
GTCTGTGAAGCAACTGATGGACATGGAGGAGGGTAAGGTTTTGCAATGGT
GGTCTGGACAGGATGGAACTGCGCCTGGATTGGTGGTACTTGCGAAGAAG
GAGATCACGGACGAGAATATAGACCTCTGGTTCGCAGTGACTAATGAGTA
G