Gcaud3523.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3523.t1
Unique Name	Gcaud3523.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	358

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_25_length_75543_cov_4.432116	contig	NODE_25_length_75543_cov_4.432116:51773..52846 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3523	Gcaud3523	Gracilaria caudata M_176_S67 male	gene	NODE_25_length_75543_cov_4.432116 51773..52846 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3523.t1.start1	Gcaud3523.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_25_length_75543_cov_4.432116 51773..51775 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3523.t1.CDS1	Gcaud3523.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_25_length_75543_cov_4.432116 51773..52846 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3523.t1.exon1	Gcaud3523.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_25_length_75543_cov_4.432116 51773..52846 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3523.t1.stop1	Gcaud3523.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_25_length_75543_cov_4.432116 52844..52846 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3523.t1	Gcaud3523.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_25_length_75543_cov_4.432116 51773..52846 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_25_length_75543_cov_4.432116:51773..52846+
coding sequence from alignment at NODE_25_length_75543_cov_4.432116:51773..52846+

mRNA sequence

>Gcaud3523.t1 ID=Gcaud3523.t1|Name=Gcaud3523.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=358bp
MEDWFQAALIAYTTRSADRFHQTRQQKANASEPVLVRSQLDASLKAFERV
TFPALEEYLAKAAKAYDEWKLRKHVSDNERAPPQKLGSGEPVQALFASLR
RERWLLSLVRRAHFVRAPLPLPVAQIVVCGIPEDIRHSAHQRYMARKSSF
SQRHNIRRDRPPSPVLGILQENEQLTLCVSLITRDNGYLIHTSRCRLLCS
EGKRVLVRVSQAMLGTPEDDFEEVRRRYLGKPDELYRRKTARKFSRWRRL
QREQEKEKQAAELRAEREMKRRRGFDHRLTTREARDATFAPFLYDTNCTA
YAYSSKITEAPKLRKVMITKYNDFSSSAGDEPDQWERAREAAKTNPLFHT
RVMNRFS*

spliced messenger RNA

>Gcaud3523.t1 ID=Gcaud3523.t1|Name=Gcaud3523.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:51773..52846+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGATTGGTTTCAAGCGGCTTTGATAGCCTACACAACCCGATCCGC
AGATAGATTCCACCAAACCCGACAACAGAAAGCCAACGCCTCAGAGCCGG
TGCTGGTTCGAAGTCAACTCGATGCGAGCTTGAAAGCGTTCGAACGGGTT
ACATTTCCAGCTTTGGAGGAATATCTGGCAAAAGCTGCCAAGGCTTATGA
CGAATGGAAGCTTCGCAAGCATGTTTCTGACAATGAAAGGGCACCTCCAC
AGAAGTTGGGCAGTGGAGAACCGGTTCAAGCCTTATTTGCTTCTCTGCGT
CGAGAAAGATGGCTCCTGTCCCTCGTAAGACGTGCGCATTTTGTGCGAGC
TCCTTTGCCACTGCCAGTGGCACAAATCGTTGTCTGTGGTATTCCAGAAG
ATATACGACACTCAGCACACCAGCGATACATGGCACGCAAGTCATCCTTC
TCGCAACGCCACAACATTCGGAGAGATAGGCCACCTTCTCCTGTGCTTGG
AATCCTTCAAGAGAATGAACAGTTAACACTATGCGTATCCCTAATAACAA
GAGACAACGGTTATCTCATACACACGTCGAGATGCAGACTTCTCTGCTCA
GAAGGGAAGAGGGTCCTAGTTCGAGTGAGTCAAGCCATGCTGGGAACGCC
CGAGGATGATTTCGAAGAAGTTCGAAGAAGATATCTTGGCAAGCCCGATG
AATTGTACCGTCGTAAGACAGCTAGAAAGTTTTCGAGATGGAGACGACTA
CAGCGAGAACAAGAGAAAGAAAAACAGGCAGCCGAGTTGAGAGCAGAAAG
GGAAATGAAGAGGAGAAGAGGTTTCGACCATCGACTAACAACGCGGGAGG
CCCGAGATGCCACTTTCGCTCCGTTTTTGTACGACACCAACTGCACCGCC
TACGCGTATTCCTCAAAAATTACAGAAGCGCCGAAGTTGCGGAAGGTCAT
GATAACGAAGTACAACGACTTCAGCAGCTCAGCAGGCGACGAGCCAGACC
AATGGGAACGCGCTCGCGAGGCTGCGAAAACGAATCCTCTCTTCCATACA
CGAGTCATGAATCGTTTCTCATGA

protein sequence of Gcaud3523.t1

>Gcaud3523.t1 ID=Gcaud3523.t1|Name=Gcaud3523.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=358bp
MEDWFQAALIAYTTRSADRFHQTRQQKANASEPVLVRSQLDASLKAFERV
TFPALEEYLAKAAKAYDEWKLRKHVSDNERAPPQKLGSGEPVQALFASLR
RERWLLSLVRRAHFVRAPLPLPVAQIVVCGIPEDIRHSAHQRYMARKSSF
SQRHNIRRDRPPSPVLGILQENEQLTLCVSLITRDNGYLIHTSRCRLLCS
EGKRVLVRVSQAMLGTPEDDFEEVRRRYLGKPDELYRRKTARKFSRWRRL
QREQEKEKQAAELRAEREMKRRRGFDHRLTTREARDATFAPFLYDTNCTA
YAYSSKITEAPKLRKVMITKYNDFSSSAGDEPDQWERAREAAKTNPLFHT
RVMNRFS*

mRNA from alignment at NODE_25_length_75543_cov_4.432116:51773..52846+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3523.t1 ID=Gcaud3523.t1|Name=Gcaud3523.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:51773..52846+ (Gracilaria caudata M_176_S67 male)
ATGGAAGATTGGTTTCAAGCGGCTTTGATAGCCTACACAACCCGATCCGC
AGATAGATTCCACCAAACCCGACAACAGAAAGCCAACGCCTCAGAGCCGG
TGCTGGTTCGAAGTCAACTCGATGCGAGCTTGAAAGCGTTCGAACGGGTT
ACATTTCCAGCTTTGGAGGAATATCTGGCAAAAGCTGCCAAGGCTTATGA
CGAATGGAAGCTTCGCAAGCATGTTTCTGACAATGAAAGGGCACCTCCAC
AGAAGTTGGGCAGTGGAGAACCGGTTCAAGCCTTATTTGCTTCTCTGCGT
CGAGAAAGATGGCTCCTGTCCCTCGTAAGACGTGCGCATTTTGTGCGAGC
TCCTTTGCCACTGCCAGTGGCACAAATCGTTGTCTGTGGTATTCCAGAAG
ATATACGACACTCAGCACACCAGCGATACATGGCACGCAAGTCATCCTTC
TCGCAACGCCACAACATTCGGAGAGATAGGCCACCTTCTCCTGTGCTTGG
AATCCTTCAAGAGAATGAACAGTTAACACTATGCGTATCCCTAATAACAA
GAGACAACGGTTATCTCATACACACGTCGAGATGCAGACTTCTCTGCTCA
GAAGGGAAGAGGGTCCTAGTTCGAGTGAGTCAAGCCATGCTGGGAACGCC
CGAGGATGATTTCGAAGAAGTTCGAAGAAGATATCTTGGCAAGCCCGATG
AATTGTACCGTCGTAAGACAGCTAGAAAGTTTTCGAGATGGAGACGACTA
CAGCGAGAACAAGAGAAAGAAAAACAGGCAGCCGAGTTGAGAGCAGAAAG
GGAAATGAAGAGGAGAAGAGGTTTCGACCATCGACTAACAACGCGGGAGG
CCCGAGATGCCACTTTCGCTCCGTTTTTGTACGACACCAACTGCACCGCC
TACGCGTATTCCTCAAAAATTACAGAAGCGCCGAAGTTGCGGAAGGTCAT
GATAACGAAGTACAACGACTTCAGCAGCTCAGCAGGCGACGAGCCAGACC
AATGGGAACGCGCTCGCGAGGCTGCGAAAACGAATCCTCTCTTCCATACA
CGAGTCATGAATCGTTTCTCATGA

Coding sequence (CDS) from alignment at NODE_25_length_75543_cov_4.432116:51773..52846+

>Gcaud3523.t1 ID=Gcaud3523.t1|Name=Gcaud3523.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1074bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:51773..52846+ (Gracilaria caudata M_176_S67 male)
ATGGAAGATTGGTTTCAAGCGGCTTTGATAGCCTACACAACCCGATCCGC
AGATAGATTCCACCAAACCCGACAACAGAAAGCCAACGCCTCAGAGCCGG
TGCTGGTTCGAAGTCAACTCGATGCGAGCTTGAAAGCGTTCGAACGGGTT
ACATTTCCAGCTTTGGAGGAATATCTGGCAAAAGCTGCCAAGGCTTATGA
CGAATGGAAGCTTCGCAAGCATGTTTCTGACAATGAAAGGGCACCTCCAC
AGAAGTTGGGCAGTGGAGAACCGGTTCAAGCCTTATTTGCTTCTCTGCGT
CGAGAAAGATGGCTCCTGTCCCTCGTAAGACGTGCGCATTTTGTGCGAGC
TCCTTTGCCACTGCCAGTGGCACAAATCGTTGTCTGTGGTATTCCAGAAG
ATATACGACACTCAGCACACCAGCGATACATGGCACGCAAGTCATCCTTC
TCGCAACGCCACAACATTCGGAGAGATAGGCCACCTTCTCCTGTGCTTGG
AATCCTTCAAGAGAATGAACAGTTAACACTATGCGTATCCCTAATAACAA
GAGACAACGGTTATCTCATACACACGTCGAGATGCAGACTTCTCTGCTCA
GAAGGGAAGAGGGTCCTAGTTCGAGTGAGTCAAGCCATGCTGGGAACGCC
CGAGGATGATTTCGAAGAAGTTCGAAGAAGATATCTTGGCAAGCCCGATG
AATTGTACCGTCGTAAGACAGCTAGAAAGTTTTCGAGATGGAGACGACTA
CAGCGAGAACAAGAGAAAGAAAAACAGGCAGCCGAGTTGAGAGCAGAAAG
GGAAATGAAGAGGAGAAGAGGTTTCGACCATCGACTAACAACGCGGGAGG
CCCGAGATGCCACTTTCGCTCCGTTTTTGTACGACACCAACTGCACCGCC
TACGCGTATTCCTCAAAAATTACAGAAGCGCCGAAGTTGCGGAAGGTCAT
GATAACGAAGTACAACGACTTCAGCAGCTCAGCAGGCGACGAGCCAGACC
AATGGGAACGCGCTCGCGAGGCTGCGAAAACGAATCCTCTCTTCCATACA
CGAGTCATGAATCGTTTCTCATGA