Gcaud2018.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2018.t1
Unique Name	Gcaud2018.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	267

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2575_length_5263_cov_3.849961	contig	NODE_2575_length_5263_cov_3.849961:934..1830 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2018	Gcaud2018	Gracilaria caudata M_176_S67 male	gene	NODE_2575_length_5263_cov_3.849961 934..1830 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2018.t1	Gcaud2018.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2575_length_5263_cov_3.849961 934..1830 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2018.t1.start1	Gcaud2018.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2575_length_5263_cov_3.849961 934..936 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2018.t1.CDS1	Gcaud2018.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2575_length_5263_cov_3.849961 934..1716 +
Gcaud2018.t1.CDS2	Gcaud2018.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_2575_length_5263_cov_3.849961 1813..1830 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2018.t1.exon1	Gcaud2018.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2575_length_5263_cov_3.849961 934..1716 +
Gcaud2018.t1.exon2	Gcaud2018.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_2575_length_5263_cov_3.849961 1813..1830 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2018.t1.intron1	Gcaud2018.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_2575_length_5263_cov_3.849961 1717..1812 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2018.t1.stop1	Gcaud2018.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2575_length_5263_cov_3.849961 1828..1830 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2575_length_5263_cov_3.849961:934..1830+
coding sequence from alignment at NODE_2575_length_5263_cov_3.849961:934..1830+

mRNA sequence

>Gcaud2018.t1 ID=Gcaud2018.t1|Name=Gcaud2018.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=267bp
MDASKEMKHVERSLSFAPMPAPKRIKRQENVALSDEVNPDTDASEIQVIF
RIRPLQPSERKETTCMLPFKADRKMLPIRHDIKASHQPSVGEGEEVTVSG
AARMSSAGADEEGNNASGLKGAGGEDEAAVWDVDYWDAVISDAGGVSAGG
LDGEGNVERDNVTIAEAEGARAADEGQCIVDGDIPDSLTVSQLFTTMAPR
MKSCTVSRGGNTVVEVASDHTVLVWSSEEHATAFPCPCRDKTCTTPVRLG
RYSHFAQNASDAQKNK*

spliced messenger RNA

>Gcaud2018.t1 ID=Gcaud2018.t1|Name=Gcaud2018.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=801bp|location=Sequence derived from alignment at NODE_2575_length_5263_cov_3.849961:934..1830+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCTAGTAAGGAGATGAAACATGTCGAGCGGAGCTTGAGCTTCGC
TCCCATGCCGGCGCCGAAACGCATCAAGCGGCAGGAGAACGTCGCATTGT
CGGATGAAGTCAACCCCGATACCGACGCTTCCGAGATCCAGGTTATTTTC
AGAATCAGACCTTTACAACCTTCTGAGAGGAAAGAAACCACTTGCATGCT
ACCGTTTAAAGCGGATAGAAAGATGCTGCCCATTCGACACGATATCAAGG
CCAGTCATCAACCGTCTGTTGGAGAGGGAGAGGAAGTGACTGTTTCAGGG
GCAGCGAGAATGAGCTCAGCTGGTGCAGACGAAGAAGGAAACAACGCATC
TGGTTTAAAGGGAGCGGGAGGGGAAGATGAAGCGGCTGTTTGGGATGTAG
ATTACTGGGACGCAGTAATTTCAGACGCAGGTGGAGTGAGTGCGGGTGGT
CTAGATGGAGAGGGAAATGTAGAGAGAGATAATGTTACTATTGCAGAGGC
AGAGGGAGCCAGGGCAGCTGATGAAGGACAGTGTATTGTCGACGGTGATA
TCCCAGACAGCCTGACGGTGTCGCAGCTGTTTACTACGATGGCTCCTCGA
ATGAAGTCGTGCACTGTGTCCCGTGGGGGCAACACCGTGGTAGAAGTGGC
GAGCGACCACACGGTATTGGTTTGGTCATCCGAGGAGCATGCCACCGCAT
TCCCGTGCCCCTGTCGAGACAAGACCTGCACCACACCAGTCCGGTTGGGC
CGATACTCGCATTTCGCGCAGAACGCTTCAGACGCTCAGAAGAACAAGTA
G

protein sequence of Gcaud2018.t1

>Gcaud2018.t1 ID=Gcaud2018.t1|Name=Gcaud2018.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=267bp
MDASKEMKHVERSLSFAPMPAPKRIKRQENVALSDEVNPDTDASEIQVIF
RIRPLQPSERKETTCMLPFKADRKMLPIRHDIKASHQPSVGEGEEVTVSG
AARMSSAGADEEGNNASGLKGAGGEDEAAVWDVDYWDAVISDAGGVSAGG
LDGEGNVERDNVTIAEAEGARAADEGQCIVDGDIPDSLTVSQLFTTMAPR
MKSCTVSRGGNTVVEVASDHTVLVWSSEEHATAFPCPCRDKTCTTPVRLG
RYSHFAQNASDAQKNK*

mRNA from alignment at NODE_2575_length_5263_cov_3.849961:934..1830+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2018.t1 ID=Gcaud2018.t1|Name=Gcaud2018.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=897bp|location=Sequence derived from alignment at NODE_2575_length_5263_cov_3.849961:934..1830+ (Gracilaria caudata M_176_S67 male)
ATGGACGCTAGTAAGGAGATGAAACATGTCGAGCGGAGCTTGAGCTTCGC
TCCCATGCCGGCGCCGAAACGCATCAAGCGGCAGGAGAACGTCGCATTGT
CGGATGAAGTCAACCCCGATACCGACGCTTCCGAGATCCAGGTTATTTTC
AGAATCAGACCTTTACAACCTTCTGAGAGGAAAGAAACCACTTGCATGCT
ACCGTTTAAAGCGGATAGAAAGATGCTGCCCATTCGACACGATATCAAGG
CCAGTCATCAACCGTCTGTTGGAGAGGGAGAGGAAGTGACTGTTTCAGGG
GCAGCGAGAATGAGCTCAGCTGGTGCAGACGAAGAAGGAAACAACGCATC
TGGTTTAAAGGGAGCGGGAGGGGAAGATGAAGCGGCTGTTTGGGATGTAG
ATTACTGGGACGCAGTAATTTCAGACGCAGGTGGAGTGAGTGCGGGTGGT
CTAGATGGAGAGGGAAATGTAGAGAGAGATAATGTTACTATTGCAGAGGC
AGAGGGAGCCAGGGCAGCTGATGAAGGACAGTGTATTGTCGACGGTGATA
TCCCAGACAGCCTGACGGTGTCGCAGCTGTTTACTACGATGGCTCCTCGA
ATGAAGTCGTGCACTGTGTCCCGTGGGGGCAACACCGTGGTAGAAGTGGC
GAGCGACCACACGGTATTGGTTTGGTCATCCGAGGAGCATGCCACCGCAT
TCCCGTGCCCCTGTCGAGACAAGACCTGCACCACACCAGTCCGGTTGGGC
CGATACTCGCATTTCGCGCAGAACGCTTCAGACGTATGTGTCCATTGCGG
AACGCTTTTCAACGGGCGGGGGGGTTGGCAAAGTGAGGGTGGTTTAAGAC
AACATCTCTCCTTACGTTACTGCAAACAGGCTCAGAAGAACAAGTAG

Coding sequence (CDS) from alignment at NODE_2575_length_5263_cov_3.849961:934..1830+

>Gcaud2018.t1 ID=Gcaud2018.t1|Name=Gcaud2018.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=801bp|location=Sequence derived from alignment at NODE_2575_length_5263_cov_3.849961:934..1830+ (Gracilaria caudata M_176_S67 male)
ATGGACGCTAGTAAGGAGATGAAACATGTCGAGCGGAGCTTGAGCTTCGC
TCCCATGCCGGCGCCGAAACGCATCAAGCGGCAGGAGAACGTCGCATTGT
CGGATGAAGTCAACCCCGATACCGACGCTTCCGAGATCCAGGTTATTTTC
AGAATCAGACCTTTACAACCTTCTGAGAGGAAAGAAACCACTTGCATGCT
ACCGTTTAAAGCGGATAGAAAGATGCTGCCCATTCGACACGATATCAAGG
CCAGTCATCAACCGTCTGTTGGAGAGGGAGAGGAAGTGACTGTTTCAGGG
GCAGCGAGAATGAGCTCAGCTGGTGCAGACGAAGAAGGAAACAACGCATC
TGGTTTAAAGGGAGCGGGAGGGGAAGATGAAGCGGCTGTTTGGGATGTAG
ATTACTGGGACGCAGTAATTTCAGACGCAGGTGGAGTGAGTGCGGGTGGT
CTAGATGGAGAGGGAAATGTAGAGAGAGATAATGTTACTATTGCAGAGGC
AGAGGGAGCCAGGGCAGCTGATGAAGGACAGTGTATTGTCGACGGTGATA
TCCCAGACAGCCTGACGGTGTCGCAGCTGTTTACTACGATGGCTCCTCGA
ATGAAGTCGTGCACTGTGTCCCGTGGGGGCAACACCGTGGTAGAAGTGGC
GAGCGACCACACGGTATTGGTTTGGTCATCCGAGGAGCATGCCACCGCAT
TCCCGTGCCCCTGTCGAGACAAGACCTGCACCACACCAGTCCGGTTGGGC
CGATACTCGCATTTCGCGCAGAACGCTTCAGACGCTCAGAAGAACAAGTA
G