Gcaud7398.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7398.t1
Unique NameGcaud7398.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2573_length_5268_cov_3.677999contigNODE_2573_length_5268_cov_3.677999:4302..4841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX50254
PFAMsDUF1995
Max annot lvl2759|Eukaryota
Evalue6.87e-15
EggNOG OGs2CISB@1|root,2S3S4@2759|Eukaryota
DescriptionDomain of unknown function (DUF1995)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7398Gcaud7398Gracilaria caudata M_176_S67 malegeneNODE_2573_length_5268_cov_3.677999 4302..4841 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7398.t1.stop1Gcaud7398.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2573_length_5268_cov_3.677999 4302..4304 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7398.t1.CDS1Gcaud7398.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2573_length_5268_cov_3.677999 4302..4841 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7398.t1.exon1Gcaud7398.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2573_length_5268_cov_3.677999 4302..4841 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7398.t1.start1Gcaud7398.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2573_length_5268_cov_3.677999 4839..4841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7398.t1Gcaud7398.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2573_length_5268_cov_3.677999 4302..4841 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7398.t1 ID=Gcaud7398.t1|Name=Gcaud7398.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=180bp
MGCDRELARLMVTLFEGTQLRMHVLFASGALVKEAHRVWGGLKDVSLGEW
RGIRGFGSGMAAGADVLVFVGDDVRLVRAAAEVGRLLGMDRLVIVLNARA
PQLLDDQFEHVYHMRSEALWKGALLFRKYPHDWSVCRVTRFGSYASVLQS
EQRPSDEQVKAALEATDANAVEDVLSLFR*
back to top

spliced messenger RNA

>Gcaud7398.t1 ID=Gcaud7398.t1|Name=Gcaud7398.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=540bp|location=Sequence derived from alignment at NODE_2573_length_5268_cov_3.677999:4302..4841- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTGTGATCGCGAGTTGGCGCGATTGATGGTGACTTTGTTTGAGGG
TACTCAGCTTAGGATGCACGTGTTGTTTGCGAGCGGCGCGCTTGTGAAGG
AGGCGCATCGGGTGTGGGGGGGCTTGAAGGATGTGAGCCTGGGCGAGTGG
AGAGGGATAAGGGGCTTTGGTTCGGGCATGGCGGCTGGCGCTGATGTGCT
GGTGTTTGTGGGCGACGACGTGCGTCTGGTTCGGGCGGCGGCGGAGGTGG
GGCGTTTGTTGGGCATGGATCGTTTGGTGATAGTGCTGAATGCACGCGCG
CCACAGCTGTTGGATGATCAGTTTGAGCACGTTTATCATATGCGCAGTGA
GGCGCTGTGGAAGGGCGCGCTGTTGTTCAGAAAGTATCCGCATGATTGGA
GTGTGTGTCGCGTCACTCGCTTCGGATCGTATGCATCGGTTCTGCAAAGC
GAACAACGACCGAGCGATGAGCAGGTGAAAGCGGCGCTTGAGGCCACTGA
TGCGAATGCTGTGGAGGATGTGTTGTCGTTGTTCCGATGA
back to top

protein sequence of Gcaud7398.t1

>Gcaud7398.t1 ID=Gcaud7398.t1|Name=Gcaud7398.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=180bp
MGCDRELARLMVTLFEGTQLRMHVLFASGALVKEAHRVWGGLKDVSLGEW
RGIRGFGSGMAAGADVLVFVGDDVRLVRAAAEVGRLLGMDRLVIVLNARA
PQLLDDQFEHVYHMRSEALWKGALLFRKYPHDWSVCRVTRFGSYASVLQS
EQRPSDEQVKAALEATDANAVEDVLSLFR*
back to top

mRNA from alignment at NODE_2573_length_5268_cov_3.677999:4302..4841-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7398.t1 ID=Gcaud7398.t1|Name=Gcaud7398.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=540bp|location=Sequence derived from alignment at NODE_2573_length_5268_cov_3.677999:4302..4841- (Gracilaria caudata M_176_S67 male)
ATGGGCTGTGATCGCGAGTTGGCGCGATTGATGGTGACTTTGTTTGAGGG
TACTCAGCTTAGGATGCACGTGTTGTTTGCGAGCGGCGCGCTTGTGAAGG
AGGCGCATCGGGTGTGGGGGGGCTTGAAGGATGTGAGCCTGGGCGAGTGG
AGAGGGATAAGGGGCTTTGGTTCGGGCATGGCGGCTGGCGCTGATGTGCT
GGTGTTTGTGGGCGACGACGTGCGTCTGGTTCGGGCGGCGGCGGAGGTGG
GGCGTTTGTTGGGCATGGATCGTTTGGTGATAGTGCTGAATGCACGCGCG
CCACAGCTGTTGGATGATCAGTTTGAGCACGTTTATCATATGCGCAGTGA
GGCGCTGTGGAAGGGCGCGCTGTTGTTCAGAAAGTATCCGCATGATTGGA
GTGTGTGTCGCGTCACTCGCTTCGGATCGTATGCATCGGTTCTGCAAAGC
GAACAACGACCGAGCGATGAGCAGGTGAAAGCGGCGCTTGAGGCCACTGA
TGCGAATGCTGTGGAGGATGTGTTGTCGTTGTTCCGATGA
back to top

Coding sequence (CDS) from alignment at NODE_2573_length_5268_cov_3.677999:4302..4841-

>Gcaud7398.t1 ID=Gcaud7398.t1|Name=Gcaud7398.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=540bp|location=Sequence derived from alignment at NODE_2573_length_5268_cov_3.677999:4302..4841- (Gracilaria caudata M_176_S67 male)
ATGGGCTGTGATCGCGAGTTGGCGCGATTGATGGTGACTTTGTTTGAGGG
TACTCAGCTTAGGATGCACGTGTTGTTTGCGAGCGGCGCGCTTGTGAAGG
AGGCGCATCGGGTGTGGGGGGGCTTGAAGGATGTGAGCCTGGGCGAGTGG
AGAGGGATAAGGGGCTTTGGTTCGGGCATGGCGGCTGGCGCTGATGTGCT
GGTGTTTGTGGGCGACGACGTGCGTCTGGTTCGGGCGGCGGCGGAGGTGG
GGCGTTTGTTGGGCATGGATCGTTTGGTGATAGTGCTGAATGCACGCGCG
CCACAGCTGTTGGATGATCAGTTTGAGCACGTTTATCATATGCGCAGTGA
GGCGCTGTGGAAGGGCGCGCTGTTGTTCAGAAAGTATCCGCATGATTGGA
GTGTGTGTCGCGTCACTCGCTTCGGATCGTATGCATCGGTTCTGCAAAGC
GAACAACGACCGAGCGATGAGCAGGTGAAAGCGGCGCTTGAGGCCACTGA
TGCGAATGCTGTGGAGGATGTGTTGTCGTTGTTCCGATGA
back to top