Gcaud2067.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2067.t1
Unique NameGcaud2067.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length71
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2544_length_5360_cov_3.485481contigNODE_2544_length_5360_cov_3.485481:797..1122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2067Gcaud2067Gracilaria caudata M_176_S67 malegeneNODE_2544_length_5360_cov_3.485481 797..1122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2067.t1Gcaud2067.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2544_length_5360_cov_3.485481 797..1122 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2067.t1.start1Gcaud2067.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2544_length_5360_cov_3.485481 797..799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2067.t1.CDS1Gcaud2067.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2544_length_5360_cov_3.485481 797..865 +
Gcaud2067.t1.CDS2Gcaud2067.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2544_length_5360_cov_3.485481 980..1122 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2067.t1.exon1Gcaud2067.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2544_length_5360_cov_3.485481 797..865 +
Gcaud2067.t1.exon2Gcaud2067.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2544_length_5360_cov_3.485481 980..1122 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2067.t1.intron1Gcaud2067.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2544_length_5360_cov_3.485481 866..979 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2067.t1 ID=Gcaud2067.t1|Name=Gcaud2067.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=71bp
MYNIALPLPNPGRAHRFCQACDHINHVRRKLCENCGAPKPSALRSAIGVS
NAKSPAPPIRKASRQSVSNVA
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spliced messenger RNA

>Gcaud2067.t1 ID=Gcaud2067.t1|Name=Gcaud2067.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=212bp|location=Sequence derived from alignment at NODE_2544_length_5360_cov_3.485481:797..1122+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACAACATTGCGCTGCCGCTGCCCAATCCGGGGCGCGCTCACCGCTT
CTGTCAGGCGTGTGATCACATCAACCACGTGCGCCGAAAGCTGTGCGAGA
ACTGCGGCGCGCCCAAGCCGAGCGCGTTGCGTTCGGCGATTGGCGTGTCG
AACGCAAAGTCGCCGGCGCCGCCCATTCGAAAGGCCAGTCGGCAGAGCGT
ATCTAACGTGGC
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protein sequence of Gcaud2067.t1

>Gcaud2067.t1 ID=Gcaud2067.t1|Name=Gcaud2067.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=71bp
MYNIALPLPNPGRAHRFCQACDHINHVRRKLCENCGAPKPSALRSAIGVS
NAKSPAPPIRKASRQSVSNVA
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mRNA from alignment at NODE_2544_length_5360_cov_3.485481:797..1122+

Legend: polypeptidestart_codonCDSexonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2067.t1 ID=Gcaud2067.t1|Name=Gcaud2067.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=326bp|location=Sequence derived from alignment at NODE_2544_length_5360_cov_3.485481:797..1122+ (Gracilaria caudata M_176_S67 male)
ATGTACAACATTGCGCTGCCGCTGCCCAATCCGGGGCGCGCTCACCGCTT
CTGTCAGGCGTGTGATCACGTAAGTTAAGCGCTTGTCACCTcacacacac
acgcacacacacacacTATGATATGATAACACATTGTTTTTACTGACTGA
CTTGGCGACATGTGTGTGCGTACCACTGCGCAGATCAACCACGTGCGCCG
AAAGCTGTGCGAGAACTGCGGCGCGCCCAAGCCGAGCGCGTTGCGTTCGG
CGATTGGCGTGTCGAACGCAAAGTCGCCGGCGCCGCCCATTCGAAAGGCC
AGTCGGCAGAGCGTATCTAACGTGGC
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Coding sequence (CDS) from alignment at NODE_2544_length_5360_cov_3.485481:797..1122+

>Gcaud2067.t1 ID=Gcaud2067.t1|Name=Gcaud2067.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=212bp|location=Sequence derived from alignment at NODE_2544_length_5360_cov_3.485481:797..1122+ (Gracilaria caudata M_176_S67 male)
ATGTACAACATTGCGCTGCCGCTGCCCAATCCGGGGCGCGCTCACCGCTT
CTGTCAGGCGTGTGATCACATCAACCACGTGCGCCGAAAGCTGTGCGAGA
ACTGCGGCGCGCCCAAGCCGAGCGCGTTGCGTTCGGCGATTGGCGTGTCG
AACGCAAAGTCGCCGGCGCCGCCCATTCGAAAGGCCAGTCGGCAGAGCGT
ATCTAACGTGGC
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