Gcaud2412.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2412.t1
Unique NameGcaud2412.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length430
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2515_length_5432_cov_7.848530contigNODE_2515_length_5432_cov_7.848530:2035..3655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR248CT
Preferred namePET127
PFAMsPet127
Max annot lvl2759|Eukaryota
GOsGO:0000957,GO:0000959,GO:0000960,GO:0000962,GO:0000963,GO:0000964,GO:0000966,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0006139,GO:0006396,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010608,GO:0016070,GO:0019219,GO:0019222,GO:0019439,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031967,GO:0031975,GO:0034641,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043487,GO:0043488,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0046700,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090304,GO:0140053,GO:1901360,GO:1901361,GO:1901575,GO:1903311
Evalue6.25e-68
EggNOG OGs2CMAW@1|root,2QPU6@2759|Eukaryota
Descriptionmitochondrial RNA 5'-end processing
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2412Gcaud2412Gracilaria caudata M_176_S67 malegeneNODE_2515_length_5432_cov_7.848530 2035..3655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2412.t1Gcaud2412.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2515_length_5432_cov_7.848530 2035..3655 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2412.t1.stop1Gcaud2412.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2515_length_5432_cov_7.848530 2035..2037 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2412.t1.CDS1Gcaud2412.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2515_length_5432_cov_7.848530 2035..2384 -
Gcaud2412.t1.CDS2Gcaud2412.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2515_length_5432_cov_7.848530 2642..3545 -
Gcaud2412.t1.CDS3Gcaud2412.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_2515_length_5432_cov_7.848530 3620..3655 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2412.t1.exon1Gcaud2412.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2515_length_5432_cov_7.848530 2035..2384 -
Gcaud2412.t1.exon2Gcaud2412.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2515_length_5432_cov_7.848530 2642..3545 -
Gcaud2412.t1.exon3Gcaud2412.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_2515_length_5432_cov_7.848530 3620..3655 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2412.t1.intron1Gcaud2412.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2515_length_5432_cov_7.848530 2385..2641 -
Gcaud2412.t1.intron2Gcaud2412.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_2515_length_5432_cov_7.848530 3546..3619 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2412.t1.start1Gcaud2412.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2515_length_5432_cov_7.848530 3653..3655 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2412.t1 ID=Gcaud2412.t1|Name=Gcaud2412.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=430bp
MGRIRWRLLGLLDSVRKIVQPRDIAWWNIPGYIPASQDTTLHGIAAETTG
AKYSSSTSSISPAIATMYHLLSNYRDTDLLGGLSEKLADLPSHFSKYHRR
PVAFTISRNDTDRELYTVNSHSGSDSGPSILRDMGHSMECMLTVPPEEFA
RKYVVSAQDGKDRNLQSDMKPSADGKQFYHYSQASQFVLRAQIDCRNAQT
GEVSDVKTCAVAKMRYDLVNYLKYTSHKLRFLRGKTDSYEPEFHDMVCTV
FLKYALQLRIGRMSGALVEYHNTTELLGLEYISLKEIESYVYGNKRWADI
AFGTAVHLLEEVLACPGVSILGAHKQFKRFGGSWIPGRENHSKRNRRQAA
NSDVFNHMKFDLSTLNDDKLRVWELKVVPLVNDEEHPRKNISLGDGDTFR
LKYHIAEVAELKGEHYSKFMSGLARIYLR*
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spliced messenger RNA

>Gcaud2412.t1 ID=Gcaud2412.t1|Name=Gcaud2412.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at NODE_2515_length_5432_cov_7.848530:2035..3655- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCGTATCCGTTGGAGGCTCCTTGGGTTATTGGACTCCGTGCGTAA
GATTGTTCAGCCGCGTGATATTGCATGGTGGAACATTCCTGGCTACATTC
CTGCTTCACAAGATACCACGCTCCATGGCATCGCTGCTGAAACTACCGGC
GCGAAATATTCAAGCAGTACCAGTTCCATCTCCCCAGCTATTGCAACCAT
GTATCACTTACTCTCTAACTATCGTGACACAGACTTACTAGGCGGCCTTT
CCGAAAAGCTAGCGGATCTCCCTAGTCATTTTTCAAAGTACCACCGTCGC
CCAGTTGCGTTTACTATATCTCGAAATGACACCGATCGTGAGCTGTACAC
CGTCAATTCCCATTCTGGATCTGACTCAGGTCCTTCCATTTTGCGCGACA
TGGGCCATTCAATGGAATGCATGCTTACCGTGCCTCCAGAAGAATTTGCT
CGCAAATACGTCGTTTCTGCTCAGGACGGAAAGGACCGAAACCTACAATC
TGACATGAAGCCATCGGCCGATGGGAAGCAATTTTATCACTATTCTCAAG
CCTCCCAGTTTGTGCTTCGAGCGCAAATCGACTGCCGCAATGCTCAAACT
GGAGAAGTGTCCGATGTTAAAACTTGCGCAGTGGCGAAGATGAGATATGA
TTTGGTCAACTATTTAAAATACACATCACATAAGCTACGGTTTTTGCGTG
GTAAGACGGACTCTTACGAGCCAGAGTTCCACGACATGGTTTGCACAGTG
TTCCTGAAGTATGCACTTCAGCTTCGAATTGGTCGCATGTCAGGAGCACT
TGTCGAATACCACAATACCACGGAGTTGCTGGGATTGGAGTATATCTCGT
TGAAGGAGATTGAATCGTACGTGTATGGGAATAAACGATGGGCTGACATA
GCCTTTGGTACTGCCGTCCATCTCTTGGAAGAAGTACTGGCCTGCCCTGG
GGTGAGCATTCTTGGAGCGCATAAACAATTTAAACGCTTTGGAGGGTCAT
GGATACCGGGAAGAGAGAATCATTCAAAGAGGAATAGGCGACAGGCAGCG
AACAGTGATGTTTTCAACCATATGAAGTTTGATCTGTCTACATTGAATGA
TGATAAGCTTCGCGTCTGGGAATTGAAGGTTGTGCCGCTGGTCAACGATG
AAGAGCACCCGCGAAAGAACATCTCTCTAGGCGATGGTGATACTTTCAGA
CTGAAGTACCATATTGCCGAAGTTGCGGAACTGAAGGGAGAGCATTATTC
AAAGTTCATGAGTGGGTTAGCGCGCATATATCTGAGATAA
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protein sequence of Gcaud2412.t1

>Gcaud2412.t1 ID=Gcaud2412.t1|Name=Gcaud2412.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=430bp
MGRIRWRLLGLLDSVRKIVQPRDIAWWNIPGYIPASQDTTLHGIAAETTG
AKYSSSTSSISPAIATMYHLLSNYRDTDLLGGLSEKLADLPSHFSKYHRR
PVAFTISRNDTDRELYTVNSHSGSDSGPSILRDMGHSMECMLTVPPEEFA
RKYVVSAQDGKDRNLQSDMKPSADGKQFYHYSQASQFVLRAQIDCRNAQT
GEVSDVKTCAVAKMRYDLVNYLKYTSHKLRFLRGKTDSYEPEFHDMVCTV
FLKYALQLRIGRMSGALVEYHNTTELLGLEYISLKEIESYVYGNKRWADI
AFGTAVHLLEEVLACPGVSILGAHKQFKRFGGSWIPGRENHSKRNRRQAA
NSDVFNHMKFDLSTLNDDKLRVWELKVVPLVNDEEHPRKNISLGDGDTFR
LKYHIAEVAELKGEHYSKFMSGLARIYLR*
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mRNA from alignment at NODE_2515_length_5432_cov_7.848530:2035..3655-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2412.t1 ID=Gcaud2412.t1|Name=Gcaud2412.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1621bp|location=Sequence derived from alignment at NODE_2515_length_5432_cov_7.848530:2035..3655- (Gracilaria caudata M_176_S67 male)
ATGGGCCGTATCCGTTGGAGGCTCCTTGGGTTATTGGTAAGCGAAGTCAT
CCAAATCAGAGGAGTAGAAGATGGCCGCCTCACCGACATCGCCATTCCTT
CTCTTACAAGGACTCCGTGCGTAAGATTGTTCAGCCGCGTGATATTGCAT
GGTGGAACATTCCTGGCTACATTCCTGCTTCACAAGATACCACGCTCCAT
GGCATCGCTGCTGAAACTACCGGCGCGAAATATTCAAGCAGTACCAGTTC
CATCTCCCCAGCTATTGCAACCATGTATCACTTACTCTCTAACTATCGTG
ACACAGACTTACTAGGCGGCCTTTCCGAAAAGCTAGCGGATCTCCCTAGT
CATTTTTCAAAGTACCACCGTCGCCCAGTTGCGTTTACTATATCTCGAAA
TGACACCGATCGTGAGCTGTACACCGTCAATTCCCATTCTGGATCTGACT
CAGGTCCTTCCATTTTGCGCGACATGGGCCATTCAATGGAATGCATGCTT
ACCGTGCCTCCAGAAGAATTTGCTCGCAAATACGTCGTTTCTGCTCAGGA
CGGAAAGGACCGAAACCTACAATCTGACATGAAGCCATCGGCCGATGGGA
AGCAATTTTATCACTATTCTCAAGCCTCCCAGTTTGTGCTTCGAGCGCAA
ATCGACTGCCGCAATGCTCAAACTGGAGAAGTGTCCGATGTTAAAACTTG
CGCAGTGGCGAAGATGAGATATGATTTGGTCAACTATTTAAAATACACAT
CACATAAGCTACGGTTTTTGCGTGGTAAGACGGACTCTTACGAGCCAGAG
TTCCACGACATGGTTTGCACAGTGTTCCTGAAGTATGCACTTCAGCTTCG
AATTGGTCGCATGTCAGGAGCACTTGTCGAATACCACAATACCACGGAGT
TGCTGGGATTGGAGTATATCTCGTTGAAGGAGATTGAATCGTACGTGTAT
GGGAATAAACGATGGGCTGACATAGCCTTTGGTACTGCCGTCCATCTCTT
GGAAGAAGTACTGGGTACGGTCACAAACGGTCTTCCATTTGGGGAATACT
GAAGAGAGATTGAAGGTCATGTTGTACACAGAGTGGTCAAAGCTTAAGAT
GTACGTGTTCGCGCAGCACTTGGAGCAGGATGAGGATGACAGTTTCGGTG
ATGCGGAGTTTCGGCGACGAGAACGCGAGAGCTTTGTGCCTTCTGAAATT
AAGGAAGGGGTTATCACAAAATCTACAAGCTGTTGGTCAATGGCACGTTG
ACTCTGATCTGCACAGTAAAGCCTGCCCTGGGGTGAGCATTCTTGGAGCG
CATAAACAATTTAAACGCTTTGGAGGGTCATGGATACCGGGAAGAGAGAA
TCATTCAAAGAGGAATAGGCGACAGGCAGCGAACAGTGATGTTTTCAACC
ATATGAAGTTTGATCTGTCTACATTGAATGATGATAAGCTTCGCGTCTGG
GAATTGAAGGTTGTGCCGCTGGTCAACGATGAAGAGCACCCGCGAAAGAA
CATCTCTCTAGGCGATGGTGATACTTTCAGACTGAAGTACCATATTGCCG
AAGTTGCGGAACTGAAGGGAGAGCATTATTCAAAGTTCATGAGTGGGTTA
GCGCGCATATATCTGAGATAA
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Coding sequence (CDS) from alignment at NODE_2515_length_5432_cov_7.848530:2035..3655-

>Gcaud2412.t1 ID=Gcaud2412.t1|Name=Gcaud2412.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1290bp|location=Sequence derived from alignment at NODE_2515_length_5432_cov_7.848530:2035..3655- (Gracilaria caudata M_176_S67 male)
ATGGGCCGTATCCGTTGGAGGCTCCTTGGGTTATTGGACTCCGTGCGTAA
GATTGTTCAGCCGCGTGATATTGCATGGTGGAACATTCCTGGCTACATTC
CTGCTTCACAAGATACCACGCTCCATGGCATCGCTGCTGAAACTACCGGC
GCGAAATATTCAAGCAGTACCAGTTCCATCTCCCCAGCTATTGCAACCAT
GTATCACTTACTCTCTAACTATCGTGACACAGACTTACTAGGCGGCCTTT
CCGAAAAGCTAGCGGATCTCCCTAGTCATTTTTCAAAGTACCACCGTCGC
CCAGTTGCGTTTACTATATCTCGAAATGACACCGATCGTGAGCTGTACAC
CGTCAATTCCCATTCTGGATCTGACTCAGGTCCTTCCATTTTGCGCGACA
TGGGCCATTCAATGGAATGCATGCTTACCGTGCCTCCAGAAGAATTTGCT
CGCAAATACGTCGTTTCTGCTCAGGACGGAAAGGACCGAAACCTACAATC
TGACATGAAGCCATCGGCCGATGGGAAGCAATTTTATCACTATTCTCAAG
CCTCCCAGTTTGTGCTTCGAGCGCAAATCGACTGCCGCAATGCTCAAACT
GGAGAAGTGTCCGATGTTAAAACTTGCGCAGTGGCGAAGATGAGATATGA
TTTGGTCAACTATTTAAAATACACATCACATAAGCTACGGTTTTTGCGTG
GTAAGACGGACTCTTACGAGCCAGAGTTCCACGACATGGTTTGCACAGTG
TTCCTGAAGTATGCACTTCAGCTTCGAATTGGTCGCATGTCAGGAGCACT
TGTCGAATACCACAATACCACGGAGTTGCTGGGATTGGAGTATATCTCGT
TGAAGGAGATTGAATCGTACGTGTATGGGAATAAACGATGGGCTGACATA
GCCTTTGGTACTGCCGTCCATCTCTTGGAAGAAGTACTGGCCTGCCCTGG
GGTGAGCATTCTTGGAGCGCATAAACAATTTAAACGCTTTGGAGGGTCAT
GGATACCGGGAAGAGAGAATCATTCAAAGAGGAATAGGCGACAGGCAGCG
AACAGTGATGTTTTCAACCATATGAAGTTTGATCTGTCTACATTGAATGA
TGATAAGCTTCGCGTCTGGGAATTGAAGGTTGTGCCGCTGGTCAACGATG
AAGAGCACCCGCGAAAGAACATCTCTCTAGGCGATGGTGATACTTTCAGA
CTGAAGTACCATATTGCCGAAGTTGCGGAACTGAAGGGAGAGCATTATTC
AAAGTTCATGAGTGGGTTAGCGCGCATATATCTGAGATAA
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