Gcaud3023.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3023.t1
Unique Name	Gcaud3023.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	258

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_250_length_34171_cov_4.548005	contig	NODE_250_length_34171_cov_4.548005:10827..11600 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3023	Gcaud3023	Gracilaria caudata M_176_S67 male	gene	NODE_250_length_34171_cov_4.548005 10827..11600 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3023.t1.stop1	Gcaud3023.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_250_length_34171_cov_4.548005 10827..10829 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3023.t1.CDS1	Gcaud3023.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_250_length_34171_cov_4.548005 10827..11600 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3023.t1.exon1	Gcaud3023.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_250_length_34171_cov_4.548005 10827..11600 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3023.t1.start1	Gcaud3023.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_250_length_34171_cov_4.548005 11598..11600 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3023.t1	Gcaud3023.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_250_length_34171_cov_4.548005 10827..11600 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_250_length_34171_cov_4.548005:10827..11600-
coding sequence from alignment at NODE_250_length_34171_cov_4.548005:10827..11600-

mRNA sequence

>Gcaud3023.t1 ID=Gcaud3023.t1|Name=Gcaud3023.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=258bp
MEAACDFSALHCPSLYPPPPSAEKTVITGWQIERNPVEDNTHPCFNPSQG
HYTVPVDGLYQIIVEVIPLGGPAIATLSNNRQVVPYAVCLQEPPSEQEDQ
ILRRFHDIGNKFAEVKHIKAGTQITCVRMPNVPGDECLRFKVEIVIRKRK
RYEKELTKKEKKKRNKRQRRQAMARQPSILPARGRGETPRTHDHDLAQFD
IDDASDSDSEWENGFESDSTSDDLPSSRLAKRFKPSRPSDDLNRSEVFFD
INDEVVS*

spliced messenger RNA

>Gcaud3023.t1 ID=Gcaud3023.t1|Name=Gcaud3023.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=774bp|location=Sequence derived from alignment at NODE_250_length_34171_cov_4.548005:10827..11600- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCCGCCTGCGATTTCTCCGCGCTGCATTGCCCAAGCCTCTATCC
TCCCCCGCCATCCGCCGAGAAGACCGTCATCACTGGATGGCAAATCGAGA
GGAATCCGGTCGAGGACAATACCCATCCATGCTTCAATCCCAGTCAGGGC
CATTATACCGTGCCCGTCGACGGGCTCTACCAGATAATCGTTGAAGTCAT
TCCCCTTGGAGGGCCCGCCATTGCTACGCTCAGCAACAATCGCCAAGTCG
TGCCCTACGCAGTCTGTTTGCAAGAGCCACCGAGCGAACAGGAAGATCAA
ATTCTGCGTCGCTTCCATGACATCGGCAATAAGTTCGCAGAGGTCAAGCA
CATCAAGGCAGGCACCCAAATTACATGTGTACGCATGCCAAACGTCCCAG
GCGATGAATGTCTGCGGTTCAAGGTAGAGATCGTCATTCGAAAGCGCAAG
AGATACGAAAAGGAGCTCACCAAAAAGGAGAAGAAGAAACGCAACAAGCG
CCAGAGAAGACAAGCCATGGCACGCCAGCCCTCTATATTACCAGCGCGAG
GTCGTGGCGAAACCCCACGCACACATGATCACGATCTCGCGCAATTCGAT
ATCGATGATGCTTCTGACAGTGACAGTGAGTGGGAGAACGGATTTGAGAG
TGATTCCACTTCGGATGACCTCCCTTCCAGTCGTCTGGCGAAGAGATTCA
AACCTTCTCGTCCTTCTGACGACCTTAATCGCAGTGAGGTCTTTTTCGAC
ATTAACGATGAAGTAGTCTCTTGA

protein sequence of Gcaud3023.t1

>Gcaud3023.t1 ID=Gcaud3023.t1|Name=Gcaud3023.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=258bp
MEAACDFSALHCPSLYPPPPSAEKTVITGWQIERNPVEDNTHPCFNPSQG
HYTVPVDGLYQIIVEVIPLGGPAIATLSNNRQVVPYAVCLQEPPSEQEDQ
ILRRFHDIGNKFAEVKHIKAGTQITCVRMPNVPGDECLRFKVEIVIRKRK
RYEKELTKKEKKKRNKRQRRQAMARQPSILPARGRGETPRTHDHDLAQFD
IDDASDSDSEWENGFESDSTSDDLPSSRLAKRFKPSRPSDDLNRSEVFFD
INDEVVS*

mRNA from alignment at NODE_250_length_34171_cov_4.548005:10827..11600-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3023.t1 ID=Gcaud3023.t1|Name=Gcaud3023.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=774bp|location=Sequence derived from alignment at NODE_250_length_34171_cov_4.548005:10827..11600- (Gracilaria caudata M_176_S67 male)
ATGGAGGCCGCCTGCGATTTCTCCGCGCTGCATTGCCCAAGCCTCTATCC
TCCCCCGCCATCCGCCGAGAAGACCGTCATCACTGGATGGCAAATCGAGA
GGAATCCGGTCGAGGACAATACCCATCCATGCTTCAATCCCAGTCAGGGC
CATTATACCGTGCCCGTCGACGGGCTCTACCAGATAATCGTTGAAGTCAT
TCCCCTTGGAGGGCCCGCCATTGCTACGCTCAGCAACAATCGCCAAGTCG
TGCCCTACGCAGTCTGTTTGCAAGAGCCACCGAGCGAACAGGAAGATCAA
ATTCTGCGTCGCTTCCATGACATCGGCAATAAGTTCGCAGAGGTCAAGCA
CATCAAGGCAGGCACCCAAATTACATGTGTACGCATGCCAAACGTCCCAG
GCGATGAATGTCTGCGGTTCAAGGTAGAGATCGTCATTCGAAAGCGCAAG
AGATACGAAAAGGAGCTCACCAAAAAGGAGAAGAAGAAACGCAACAAGCG
CCAGAGAAGACAAGCCATGGCACGCCAGCCCTCTATATTACCAGCGCGAG
GTCGTGGCGAAACCCCACGCACACATGATCACGATCTCGCGCAATTCGAT
ATCGATGATGCTTCTGACAGTGACAGTGAGTGGGAGAACGGATTTGAGAG
TGATTCCACTTCGGATGACCTCCCTTCCAGTCGTCTGGCGAAGAGATTCA
AACCTTCTCGTCCTTCTGACGACCTTAATCGCAGTGAGGTCTTTTTCGAC
ATTAACGATGAAGTAGTCTCTTGA

Coding sequence (CDS) from alignment at NODE_250_length_34171_cov_4.548005:10827..11600-

>Gcaud3023.t1 ID=Gcaud3023.t1|Name=Gcaud3023.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=774bp|location=Sequence derived from alignment at NODE_250_length_34171_cov_4.548005:10827..11600- (Gracilaria caudata M_176_S67 male)
ATGGAGGCCGCCTGCGATTTCTCCGCGCTGCATTGCCCAAGCCTCTATCC
TCCCCCGCCATCCGCCGAGAAGACCGTCATCACTGGATGGCAAATCGAGA
GGAATCCGGTCGAGGACAATACCCATCCATGCTTCAATCCCAGTCAGGGC
CATTATACCGTGCCCGTCGACGGGCTCTACCAGATAATCGTTGAAGTCAT
TCCCCTTGGAGGGCCCGCCATTGCTACGCTCAGCAACAATCGCCAAGTCG
TGCCCTACGCAGTCTGTTTGCAAGAGCCACCGAGCGAACAGGAAGATCAA
ATTCTGCGTCGCTTCCATGACATCGGCAATAAGTTCGCAGAGGTCAAGCA
CATCAAGGCAGGCACCCAAATTACATGTGTACGCATGCCAAACGTCCCAG
GCGATGAATGTCTGCGGTTCAAGGTAGAGATCGTCATTCGAAAGCGCAAG
AGATACGAAAAGGAGCTCACCAAAAAGGAGAAGAAGAAACGCAACAAGCG
CCAGAGAAGACAAGCCATGGCACGCCAGCCCTCTATATTACCAGCGCGAG
GTCGTGGCGAAACCCCACGCACACATGATCACGATCTCGCGCAATTCGAT
ATCGATGATGCTTCTGACAGTGACAGTGAGTGGGAGAACGGATTTGAGAG
TGATTCCACTTCGGATGACCTCCCTTCCAGTCGTCTGGCGAAGAGATTCA
AACCTTCTCGTCCTTCTGACGACCTTAATCGCAGTGAGGTCTTTTTCGAC
ATTAACGATGAAGTAGTCTCTTGA