Gcaud8426.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8426.t1
Unique NameGcaud8426.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length229
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_248_length_34309_cov_4.396809contigNODE_248_length_34309_cov_4.396809:9278..9964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog329726.AM1_0173
PFAMsHemolysinCabind
Max annot lvl1117|Cyanobacteria
Evalue3.71e-43
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,1G449@1117|Cyanobacteria
DescriptionHaemolysin-type calcium-binding repeat (2 copies)
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8426Gcaud8426Gracilaria caudata M_176_S67 malegeneNODE_248_length_34309_cov_4.396809 9278..9964 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8426.t1.start1Gcaud8426.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_248_length_34309_cov_4.396809 9278..9280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8426.t1.CDS1Gcaud8426.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_248_length_34309_cov_4.396809 9278..9964 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8426.t1.exon1Gcaud8426.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_248_length_34309_cov_4.396809 9278..9964 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8426.t1.stop1Gcaud8426.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_248_length_34309_cov_4.396809 9962..9964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8426.t1Gcaud8426.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_248_length_34309_cov_4.396809 9278..9964 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8426.t1 ID=Gcaud8426.t1|Name=Gcaud8426.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=229bp
MVLTDKSRSASGLQAIVEEFRDTLGGIDNGNDAGPLEDGQRSINWDAPIV
PFNMPNDFFNSQVTRGAVFQTKRNEFAVSNPAEGPPDDDRFSSLLPESVS
SQFRRFSLERLFTPVQSNEFTTWFQIPAGTDSAVVSGFGAVFTDVDKENT
TVMKFYDVDGCLIETVYVPAQNAGLSFGGAIVVEAYTKKPISVIARVDIT
LGDIAIADAYSKSGDVVVADDFIYGEPV*
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spliced messenger RNA

>Gcaud8426.t1 ID=Gcaud8426.t1|Name=Gcaud8426.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=687bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:9278..9964+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACTGACGGACAAATCGAGGTCGGCATCCGGACTGCAAGCTATAGT
GGAAGAGTTCCGTGACACTCTGGGAGGTATCGACAACGGTAATGACGCAG
GCCCTCTTGAAGACGGACAACGATCGATCAATTGGGACGCACCGATAGTG
CCATTCAACATGCCGAACGATTTCTTCAATTCACAGGTAACGCGTGGAGC
TGTGTTTCAGACCAAACGGAACGAATTTGCTGTCTCAAATCCAGCAGAGG
GTCCTCCAGATGATGATCGTTTCTCATCGCTGTTGCCGGAATCAGTTTCA
AGTCAGTTTCGAAGGTTTTCTTTGGAGAGGCTATTTACGCCTGTGCAGTC
AAATGAGTTCACTACGTGGTTTCAGATACCCGCGGGGACGGACAGTGCGG
TGGTGAGCGGGTTTGGGGCAGTGTTTACTGATGTGGACAAAGAGAATACA
ACTGTGATGAAGTTTTATGATGTAGATGGGTGCCTAATTGAGACGGTGTA
TGTTCCCGCCCAGAACGCGGGCCTTAGCTTCGGTGGGGCGATTGTAGTGG
AAGCTTACACGAAGAAGCCTATATCTGTTATTGCGCGGGTTGATATCACG
CTGGGTGATATTGCGATAGCAGATGCGTACTCAAAGTCGGGAGATGTGGT
GGTCGCGGATGATTTCATCTACGGCGAGCCCGTCTAG
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protein sequence of Gcaud8426.t1

>Gcaud8426.t1 ID=Gcaud8426.t1|Name=Gcaud8426.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=229bp
MVLTDKSRSASGLQAIVEEFRDTLGGIDNGNDAGPLEDGQRSINWDAPIV
PFNMPNDFFNSQVTRGAVFQTKRNEFAVSNPAEGPPDDDRFSSLLPESVS
SQFRRFSLERLFTPVQSNEFTTWFQIPAGTDSAVVSGFGAVFTDVDKENT
TVMKFYDVDGCLIETVYVPAQNAGLSFGGAIVVEAYTKKPISVIARVDIT
LGDIAIADAYSKSGDVVVADDFIYGEPV*
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mRNA from alignment at NODE_248_length_34309_cov_4.396809:9278..9964+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8426.t1 ID=Gcaud8426.t1|Name=Gcaud8426.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=687bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:9278..9964+ (Gracilaria caudata M_176_S67 male)
ATGGTACTGACGGACAAATCGAGGTCGGCATCCGGACTGCAAGCTATAGT
GGAAGAGTTCCGTGACACTCTGGGAGGTATCGACAACGGTAATGACGCAG
GCCCTCTTGAAGACGGACAACGATCGATCAATTGGGACGCACCGATAGTG
CCATTCAACATGCCGAACGATTTCTTCAATTCACAGGTAACGCGTGGAGC
TGTGTTTCAGACCAAACGGAACGAATTTGCTGTCTCAAATCCAGCAGAGG
GTCCTCCAGATGATGATCGTTTCTCATCGCTGTTGCCGGAATCAGTTTCA
AGTCAGTTTCGAAGGTTTTCTTTGGAGAGGCTATTTACGCCTGTGCAGTC
AAATGAGTTCACTACGTGGTTTCAGATACCCGCGGGGACGGACAGTGCGG
TGGTGAGCGGGTTTGGGGCAGTGTTTACTGATGTGGACAAAGAGAATACA
ACTGTGATGAAGTTTTATGATGTAGATGGGTGCCTAATTGAGACGGTGTA
TGTTCCCGCCCAGAACGCGGGCCTTAGCTTCGGTGGGGCGATTGTAGTGG
AAGCTTACACGAAGAAGCCTATATCTGTTATTGCGCGGGTTGATATCACG
CTGGGTGATATTGCGATAGCAGATGCGTACTCAAAGTCGGGAGATGTGGT
GGTCGCGGATGATTTCATCTACGGCGAGCCCGTCTAG
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Coding sequence (CDS) from alignment at NODE_248_length_34309_cov_4.396809:9278..9964+

>Gcaud8426.t1 ID=Gcaud8426.t1|Name=Gcaud8426.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=687bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:9278..9964+ (Gracilaria caudata M_176_S67 male)
ATGGTACTGACGGACAAATCGAGGTCGGCATCCGGACTGCAAGCTATAGT
GGAAGAGTTCCGTGACACTCTGGGAGGTATCGACAACGGTAATGACGCAG
GCCCTCTTGAAGACGGACAACGATCGATCAATTGGGACGCACCGATAGTG
CCATTCAACATGCCGAACGATTTCTTCAATTCACAGGTAACGCGTGGAGC
TGTGTTTCAGACCAAACGGAACGAATTTGCTGTCTCAAATCCAGCAGAGG
GTCCTCCAGATGATGATCGTTTCTCATCGCTGTTGCCGGAATCAGTTTCA
AGTCAGTTTCGAAGGTTTTCTTTGGAGAGGCTATTTACGCCTGTGCAGTC
AAATGAGTTCACTACGTGGTTTCAGATACCCGCGGGGACGGACAGTGCGG
TGGTGAGCGGGTTTGGGGCAGTGTTTACTGATGTGGACAAAGAGAATACA
ACTGTGATGAAGTTTTATGATGTAGATGGGTGCCTAATTGAGACGGTGTA
TGTTCCCGCCCAGAACGCGGGCCTTAGCTTCGGTGGGGCGATTGTAGTGG
AAGCTTACACGAAGAAGCCTATATCTGTTATTGCGCGGGTTGATATCACG
CTGGGTGATATTGCGATAGCAGATGCGTACTCAAAGTCGGGAGATGTGGT
GGTCGCGGATGATTTCATCTACGGCGAGCCCGTCTAG
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