Gcaud8427.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8427.t1
Unique Name	Gcaud8427.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	583

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_248_length_34309_cov_4.396809	contig	NODE_248_length_34309_cov_4.396809:12023..13771 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173020.Cha6605_2330
PFAMs	CARDB,PAP2
Max annot lvl	1117\|Cyanobacteria
Evalue	3.95e-90
EggNOG OGs	COG0671@1\|root,COG0671@2\|Bacteria,1GHH3@1117\|Cyanobacteria
Description	PFAM PAP2 superfamily
COG category	I

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8427	Gcaud8427	Gracilaria caudata M_176_S67 male	gene	NODE_248_length_34309_cov_4.396809 12023..13771 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8427.t1.start1	Gcaud8427.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_248_length_34309_cov_4.396809 12023..12025 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8427.t1.CDS1	Gcaud8427.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_248_length_34309_cov_4.396809 12023..13771 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8427.t1.exon1	Gcaud8427.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_248_length_34309_cov_4.396809 12023..13771 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8427.t1.stop1	Gcaud8427.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_248_length_34309_cov_4.396809 13769..13771 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8427.t1	Gcaud8427.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_248_length_34309_cov_4.396809 12023..13771 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_248_length_34309_cov_4.396809:12023..13771+
coding sequence from alignment at NODE_248_length_34309_cov_4.396809:12023..13771+

mRNA sequence

>Gcaud8427.t1 ID=Gcaud8427.t1|Name=Gcaud8427.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=583bp
MRFSIFFILFASVFAAFAHGSVLNTTLRQFGGPCSDDTDCIEGFQFPVIR
CVAGTCVSPNGLLGALISRPPPGVGPGVSIPILSPDSPPEDAPTGPPVSC
VFITDCDPGLVCVGTNPGGVCARAEGILGIGHLVVNLIQQDYTPLPGEDP
SPVQAGPTVTSRAMAIIFQAAHDAFGFVSGAFEPKILGLVGSAERESLMA
QGTVFAGVERQAEFAMQAAALTAAKLLYPPSESLIDAVFKDVTAGALPGV
ILFGERLGSILFRLRLTDGSQIPQLDDIFEFDVFLKHQPDPNFPLVVGDP
DAVQENFGRFWGEVTPFVISDVEEDAFLEIFPDFDTPAYMEDLEEVKTLG
ECNSFTLDSGVLIQDIGIFWGYDGAALIGVPPRLYLQVLLAIEELEDLPL
ASQIRALTGANLAMADAGIAAWFWKFFYDLWRPTLGVRLDPFTPNATWNP
RGVPLSNVVTDPPPPFCVGINPDFPAYPSGHSSFGTSAFVTIAKILGKEP
KDITVTITSDEFNGLTVEGTSETDIVGGVVRPIFTQTITLQEAIDQNKDS
RVFLGVHWRFDSEGGEVVGDQIGEIAAAEFAI*

spliced messenger RNA

>Gcaud8427.t1 ID=Gcaud8427.t1|Name=Gcaud8427.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:12023..13771+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGTTTTCGATCTTCTTCATTCTCTTTGCTTCCGTGTTCGCAGCATT
TGCCCACGGCTCCGTGCTCAACACAACCCTTCGCCAGTTTGGAGGGCCCT
GTTCTGACGATACGGATTGCATCGAAGGTTTCCAGTTCCCAGTTATCAGA
TGCGTTGCGGGAACCTGCGTATCTCCTAACGGCCTCCTAGGGGCTCTGAT
TTCCCGCCCTCCTCCTGGTGTCGGGCCTGGAGTCTCTATCCCGATCCTTT
CTCCCGATTCTCCTCCCGAAGATGCGCCGACAGGTCCTCCCGTTTCGTGT
GTTTTCATCACAGACTGTGATCCAGGTCTGGTATGTGTGGGAACGAATCC
AGGGGGAGTCTGTGCCCGTGCGGAGGGTATTCTTGGAATCGGCCATCTCG
TTGTCAACCTCATCCAGCAAGATTACACCCCCCTGCCTGGAGAGGATCCC
TCGCCAGTTCAGGCAGGTCCCACTGTCACATCTCGTGCCATGGCTATCAT
TTTCCAGGCTGCGCATGATGCATTTGGTTTCGTCAGTGGTGCCTTTGAGC
CGAAAATCCTCGGACTCGTCGGTTCAGCAGAGCGTGAGTCGCTTATGGCG
CAAGGGACGGTTTTTGCGGGCGTCGAGAGACAGGCCGAGTTTGCCATGCA
GGCAGCAGCTCTTACGGCGGCCAAACTACTGTACCCACCTTCTGAGTCCC
TAATTGATGCCGTCTTCAAGGATGTCACTGCGGGGGCCCTCCCTGGCGTC
ATTCTTTTCGGAGAACGGTTGGGTAGCATCCTCTTCCGTTTACGTCTGAC
TGATGGCTCTCAGATCCCGCAATTGGACGATATCTTCGAGTTTGATGTGT
TCCTGAAGCATCAACCTGACCCCAACTTCCCTCTCGTCGTTGGTGACCCT
GATGCCGTACAGGAGAATTTCGGAAGATTCTGGGGTGAGGTGACTCCGTT
CGTGATCAGTGATGTCGAGGAGGATGCTTTCCTCGAAATATTCCCTGACT
TCGATACCCCGGCATACATGGAGGATCTTGAGGAAGTCAAAACACTAGGA
GAGTGCAATAGCTTTACTCTCGACAGCGGAGTTCTGATTCAGGACATTGG
CATTTTCTGGGGTTACGATGGAGCTGCTTTGATTGGAGTACCGCCTCGTC
TGTACTTACAAGTGCTGTTGGCTATCGAGGAACTGGAAGATCTTCCGCTG
GCAAGTCAAATTCGTGCGCTGACAGGCGCTAACCTTGCCATGGCAGATGC
TGGAATTGCGGCGTGGTTCTGGAAGTTCTTTTACGATTTGTGGCGTCCTA
CTCTTGGTGTTCGTCTCGATCCGTTCACTCCGAACGCAACTTGGAATCCC
CGTGGAGTGCCTTTGAGTAATGTGGTCACTGATCCACCACCACCATTCTG
CGTTGGGATCAACCCTGACTTCCCCGCCTATCCTTCTGGACATTCCTCGT
TTGGTACTTCTGCGTTTGTGACGATTGCGAAGATTCTTGGGAAGGAACCG
AAGGACATCACCGTAACTATCACATCGGATGAGTTCAATGGCCTAACTGT
GGAGGGCACGTCTGAAACGGACATTGTGGGCGGTGTGGTGCGACCTATAT
TCACTCAAACTATTACTCTGCAAGAGGCTATTGATCAGAACAAGGACAGC
CGAGTCTTCTTAGGAGTGCATTGGAGGTTTGATTCGGAGGGTGGAGAGGT
TGTTGGCGACCAGATCGGAGAGATAGCTGCTGCGGAGTTCGCGATTTAG

protein sequence of Gcaud8427.t1

>Gcaud8427.t1 ID=Gcaud8427.t1|Name=Gcaud8427.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=583bp
MRFSIFFILFASVFAAFAHGSVLNTTLRQFGGPCSDDTDCIEGFQFPVIR
CVAGTCVSPNGLLGALISRPPPGVGPGVSIPILSPDSPPEDAPTGPPVSC
VFITDCDPGLVCVGTNPGGVCARAEGILGIGHLVVNLIQQDYTPLPGEDP
SPVQAGPTVTSRAMAIIFQAAHDAFGFVSGAFEPKILGLVGSAERESLMA
QGTVFAGVERQAEFAMQAAALTAAKLLYPPSESLIDAVFKDVTAGALPGV
ILFGERLGSILFRLRLTDGSQIPQLDDIFEFDVFLKHQPDPNFPLVVGDP
DAVQENFGRFWGEVTPFVISDVEEDAFLEIFPDFDTPAYMEDLEEVKTLG
ECNSFTLDSGVLIQDIGIFWGYDGAALIGVPPRLYLQVLLAIEELEDLPL
ASQIRALTGANLAMADAGIAAWFWKFFYDLWRPTLGVRLDPFTPNATWNP
RGVPLSNVVTDPPPPFCVGINPDFPAYPSGHSSFGTSAFVTIAKILGKEP
KDITVTITSDEFNGLTVEGTSETDIVGGVVRPIFTQTITLQEAIDQNKDS
RVFLGVHWRFDSEGGEVVGDQIGEIAAAEFAI*

mRNA from alignment at NODE_248_length_34309_cov_4.396809:12023..13771+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8427.t1 ID=Gcaud8427.t1|Name=Gcaud8427.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:12023..13771+ (Gracilaria caudata M_176_S67 male)
ATGAGGTTTTCGATCTTCTTCATTCTCTTTGCTTCCGTGTTCGCAGCATT
TGCCCACGGCTCCGTGCTCAACACAACCCTTCGCCAGTTTGGAGGGCCCT
GTTCTGACGATACGGATTGCATCGAAGGTTTCCAGTTCCCAGTTATCAGA
TGCGTTGCGGGAACCTGCGTATCTCCTAACGGCCTCCTAGGGGCTCTGAT
TTCCCGCCCTCCTCCTGGTGTCGGGCCTGGAGTCTCTATCCCGATCCTTT
CTCCCGATTCTCCTCCCGAAGATGCGCCGACAGGTCCTCCCGTTTCGTGT
GTTTTCATCACAGACTGTGATCCAGGTCTGGTATGTGTGGGAACGAATCC
AGGGGGAGTCTGTGCCCGTGCGGAGGGTATTCTTGGAATCGGCCATCTCG
TTGTCAACCTCATCCAGCAAGATTACACCCCCCTGCCTGGAGAGGATCCC
TCGCCAGTTCAGGCAGGTCCCACTGTCACATCTCGTGCCATGGCTATCAT
TTTCCAGGCTGCGCATGATGCATTTGGTTTCGTCAGTGGTGCCTTTGAGC
CGAAAATCCTCGGACTCGTCGGTTCAGCAGAGCGTGAGTCGCTTATGGCG
CAAGGGACGGTTTTTGCGGGCGTCGAGAGACAGGCCGAGTTTGCCATGCA
GGCAGCAGCTCTTACGGCGGCCAAACTACTGTACCCACCTTCTGAGTCCC
TAATTGATGCCGTCTTCAAGGATGTCACTGCGGGGGCCCTCCCTGGCGTC
ATTCTTTTCGGAGAACGGTTGGGTAGCATCCTCTTCCGTTTACGTCTGAC
TGATGGCTCTCAGATCCCGCAATTGGACGATATCTTCGAGTTTGATGTGT
TCCTGAAGCATCAACCTGACCCCAACTTCCCTCTCGTCGTTGGTGACCCT
GATGCCGTACAGGAGAATTTCGGAAGATTCTGGGGTGAGGTGACTCCGTT
CGTGATCAGTGATGTCGAGGAGGATGCTTTCCTCGAAATATTCCCTGACT
TCGATACCCCGGCATACATGGAGGATCTTGAGGAAGTCAAAACACTAGGA
GAGTGCAATAGCTTTACTCTCGACAGCGGAGTTCTGATTCAGGACATTGG
CATTTTCTGGGGTTACGATGGAGCTGCTTTGATTGGAGTACCGCCTCGTC
TGTACTTACAAGTGCTGTTGGCTATCGAGGAACTGGAAGATCTTCCGCTG
GCAAGTCAAATTCGTGCGCTGACAGGCGCTAACCTTGCCATGGCAGATGC
TGGAATTGCGGCGTGGTTCTGGAAGTTCTTTTACGATTTGTGGCGTCCTA
CTCTTGGTGTTCGTCTCGATCCGTTCACTCCGAACGCAACTTGGAATCCC
CGTGGAGTGCCTTTGAGTAATGTGGTCACTGATCCACCACCACCATTCTG
CGTTGGGATCAACCCTGACTTCCCCGCCTATCCTTCTGGACATTCCTCGT
TTGGTACTTCTGCGTTTGTGACGATTGCGAAGATTCTTGGGAAGGAACCG
AAGGACATCACCGTAACTATCACATCGGATGAGTTCAATGGCCTAACTGT
GGAGGGCACGTCTGAAACGGACATTGTGGGCGGTGTGGTGCGACCTATAT
TCACTCAAACTATTACTCTGCAAGAGGCTATTGATCAGAACAAGGACAGC
CGAGTCTTCTTAGGAGTGCATTGGAGGTTTGATTCGGAGGGTGGAGAGGT
TGTTGGCGACCAGATCGGAGAGATAGCTGCTGCGGAGTTCGCGATTTAG

Coding sequence (CDS) from alignment at NODE_248_length_34309_cov_4.396809:12023..13771+

>Gcaud8427.t1 ID=Gcaud8427.t1|Name=Gcaud8427.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1749bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:12023..13771+ (Gracilaria caudata M_176_S67 male)
ATGAGGTTTTCGATCTTCTTCATTCTCTTTGCTTCCGTGTTCGCAGCATT
TGCCCACGGCTCCGTGCTCAACACAACCCTTCGCCAGTTTGGAGGGCCCT
GTTCTGACGATACGGATTGCATCGAAGGTTTCCAGTTCCCAGTTATCAGA
TGCGTTGCGGGAACCTGCGTATCTCCTAACGGCCTCCTAGGGGCTCTGAT
TTCCCGCCCTCCTCCTGGTGTCGGGCCTGGAGTCTCTATCCCGATCCTTT
CTCCCGATTCTCCTCCCGAAGATGCGCCGACAGGTCCTCCCGTTTCGTGT
GTTTTCATCACAGACTGTGATCCAGGTCTGGTATGTGTGGGAACGAATCC
AGGGGGAGTCTGTGCCCGTGCGGAGGGTATTCTTGGAATCGGCCATCTCG
TTGTCAACCTCATCCAGCAAGATTACACCCCCCTGCCTGGAGAGGATCCC
TCGCCAGTTCAGGCAGGTCCCACTGTCACATCTCGTGCCATGGCTATCAT
TTTCCAGGCTGCGCATGATGCATTTGGTTTCGTCAGTGGTGCCTTTGAGC
CGAAAATCCTCGGACTCGTCGGTTCAGCAGAGCGTGAGTCGCTTATGGCG
CAAGGGACGGTTTTTGCGGGCGTCGAGAGACAGGCCGAGTTTGCCATGCA
GGCAGCAGCTCTTACGGCGGCCAAACTACTGTACCCACCTTCTGAGTCCC
TAATTGATGCCGTCTTCAAGGATGTCACTGCGGGGGCCCTCCCTGGCGTC
ATTCTTTTCGGAGAACGGTTGGGTAGCATCCTCTTCCGTTTACGTCTGAC
TGATGGCTCTCAGATCCCGCAATTGGACGATATCTTCGAGTTTGATGTGT
TCCTGAAGCATCAACCTGACCCCAACTTCCCTCTCGTCGTTGGTGACCCT
GATGCCGTACAGGAGAATTTCGGAAGATTCTGGGGTGAGGTGACTCCGTT
CGTGATCAGTGATGTCGAGGAGGATGCTTTCCTCGAAATATTCCCTGACT
TCGATACCCCGGCATACATGGAGGATCTTGAGGAAGTCAAAACACTAGGA
GAGTGCAATAGCTTTACTCTCGACAGCGGAGTTCTGATTCAGGACATTGG
CATTTTCTGGGGTTACGATGGAGCTGCTTTGATTGGAGTACCGCCTCGTC
TGTACTTACAAGTGCTGTTGGCTATCGAGGAACTGGAAGATCTTCCGCTG
GCAAGTCAAATTCGTGCGCTGACAGGCGCTAACCTTGCCATGGCAGATGC
TGGAATTGCGGCGTGGTTCTGGAAGTTCTTTTACGATTTGTGGCGTCCTA
CTCTTGGTGTTCGTCTCGATCCGTTCACTCCGAACGCAACTTGGAATCCC
CGTGGAGTGCCTTTGAGTAATGTGGTCACTGATCCACCACCACCATTCTG
CGTTGGGATCAACCCTGACTTCCCCGCCTATCCTTCTGGACATTCCTCGT
TTGGTACTTCTGCGTTTGTGACGATTGCGAAGATTCTTGGGAAGGAACCG
AAGGACATCACCGTAACTATCACATCGGATGAGTTCAATGGCCTAACTGT
GGAGGGCACGTCTGAAACGGACATTGTGGGCGGTGTGGTGCGACCTATAT
TCACTCAAACTATTACTCTGCAAGAGGCTATTGATCAGAACAAGGACAGC
CGAGTCTTCTTAGGAGTGCATTGGAGGTTTGATTCGGAGGGTGGAGAGGT
TGTTGGCGACCAGATCGGAGAGATAGCTGCTGCGGAGTTCGCGATTTAG