Gcaud8430.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8430.t1
Unique Name	Gcaud8430.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	328

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_248_length_34309_cov_4.396809	contig	NODE_248_length_34309_cov_4.396809:28696..29749 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1041930.Mtc_2112
PFAMs	AIM24
Max annot lvl	224756\|Methanomicrobia
Evalue	1.47e-45
EggNOG OGs	COG2013@1\|root,arCOG01908@2157\|Archaea,2XUJJ@28890\|Euryarchaeota,2N9IN@224756\|Methanomicrobia
Description	Mitochondrial biogenesis AIM24
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8430	Gcaud8430	Gracilaria caudata M_176_S67 male	gene	NODE_248_length_34309_cov_4.396809 28696..29749 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8430.t1	Gcaud8430.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_248_length_34309_cov_4.396809 28696..29749 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8430.t1.stop1	Gcaud8430.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_248_length_34309_cov_4.396809 28696..28698 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8430.t1.CDS1	Gcaud8430.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_248_length_34309_cov_4.396809 28696..28833 -
Gcaud8430.t1.CDS2	Gcaud8430.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_248_length_34309_cov_4.396809 28904..29749 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8430.t1.exon1	Gcaud8430.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_248_length_34309_cov_4.396809 28696..28833 -
Gcaud8430.t1.exon2	Gcaud8430.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_248_length_34309_cov_4.396809 28904..29749 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8430.t1.intron1	Gcaud8430.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_248_length_34309_cov_4.396809 28834..28903 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8430.t1.start1	Gcaud8430.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_248_length_34309_cov_4.396809 29747..29749 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_248_length_34309_cov_4.396809:28696..29749-
coding sequence from alignment at NODE_248_length_34309_cov_4.396809:28696..29749-

mRNA sequence

>Gcaud8430.t1 ID=Gcaud8430.t1|Name=Gcaud8430.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=328bp
MTHADIKRFKRLASTTLATVSAAAFSKDKMNTESRCPSVITNLVARAASS
AAKPAPVIVTPAPASDSAAFSDSDDFDHECAREYLASNAYVSDAHLSFLE
LVQNSSSESNGGSLFELQNQKLLRINLQQNKFSMAWIKHGTRVASLGNIR
FKAAGMRDQRLTNVLKKTLTAEGMKLVKCEGNGVVFCADEQKLLHVLQLD
EEEILYVNGSNLLAICADVKYDIKFMTGMNLASGIFFVKLIGKGMVTFGC
HGAVVALAASEASPVYTDPNATVAWTHAPTVKMDVSLKSLVGKGSGEEVQ
LEFKQGLVVVQPHHHVPVRESIKPSVL*

spliced messenger RNA

>Gcaud8430.t1 ID=Gcaud8430.t1|Name=Gcaud8430.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=984bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:28696..29749- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCACGCGGACATAAAGCGCTTTAAGCGCCTGGCTTCCACCACTCT
AGCCACCGTCTCAGCTGCAGCATTTTCGAAAGACAAAATGAATACCGAAT
CACGATGTCCCTCCGTTATCACCAACTTGGTTGCCAGGGCTGCCTCCAGT
GCCGCTAAACCAGCCCCTGTCATCGTCACGCCTGCCCCAGCCTCGGATTC
TGCGGCTTTCTCCGATAGTGATGATTTTGACCACGAATGCGCCCGTGAAT
ATCTTGCCTCCAACGCTTACGTTTCTGATGCACACCTCTCATTTTTGGAG
CTCGTGCAGAATTCTTCAAGTGAATCCAATGGCGGTTCGTTGTTCGAGCT
GCAGAACCAAAAGCTTTTGCGCATCAACCTGCAACAGAACAAGTTTTCAA
TGGCTTGGATAAAGCACGGAACAAGAGTTGCATCGCTGGGGAATATAAGA
TTCAAGGCAGCGGGGATGCGTGATCAGCGACTAACTAACGTGTTGAAGAA
GACACTGACTGCAGAAGGAATGAAATTAGTCAAATGTGAGGGAAATGGAG
TTGTTTTTTGCGCGGATGAACAGAAGTTGTTGCATGTTTTGCAACTTGAC
GAAGAGGAGATTTTGTATGTCAACGGCAGCAATCTGCTAGCGATCTGCGC
AGACGTCAAATATGATATCAAGTTTATGACTGGAATGAATCTTGCATCAG
GTATATTTTTCGTGAAACTCATTGGGAAGGGTATGGTAACGTTCGGATGT
CATGGAGCGGTTGTCGCTCTTGCAGCCAGTGAGGCATCTCCCGTGTATAC
TGACCCTAATGCTACTGTTGCTTGGACGCATGCACCGACTGTTAAGATGG
ATGTGAGTCTCAAGTCGCTAGTTGGGAAAGGGTCAGGAGAGGAAGTGCAA
CTGGAGTTCAAGCAGGGTTTGGTGGTCGTGCAGCCACACCATCATGTTCC
TGTACGAGAATCCATCAAACCCAGCGTGTTGTAA

protein sequence of Gcaud8430.t1

>Gcaud8430.t1 ID=Gcaud8430.t1|Name=Gcaud8430.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=328bp
MTHADIKRFKRLASTTLATVSAAAFSKDKMNTESRCPSVITNLVARAASS
AAKPAPVIVTPAPASDSAAFSDSDDFDHECAREYLASNAYVSDAHLSFLE
LVQNSSSESNGGSLFELQNQKLLRINLQQNKFSMAWIKHGTRVASLGNIR
FKAAGMRDQRLTNVLKKTLTAEGMKLVKCEGNGVVFCADEQKLLHVLQLD
EEEILYVNGSNLLAICADVKYDIKFMTGMNLASGIFFVKLIGKGMVTFGC
HGAVVALAASEASPVYTDPNATVAWTHAPTVKMDVSLKSLVGKGSGEEVQ
LEFKQGLVVVQPHHHVPVRESIKPSVL*

mRNA from alignment at NODE_248_length_34309_cov_4.396809:28696..29749-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8430.t1 ID=Gcaud8430.t1|Name=Gcaud8430.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1054bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:28696..29749- (Gracilaria caudata M_176_S67 male)
ATGACTCACGCGGACATAAAGCGCTTTAAGCGCCTGGCTTCCACCACTCT
AGCCACCGTCTCAGCTGCAGCATTTTCGAAAGACAAAATGAATACCGAAT
CACGATGTCCCTCCGTTATCACCAACTTGGTTGCCAGGGCTGCCTCCAGT
GCCGCTAAACCAGCCCCTGTCATCGTCACGCCTGCCCCAGCCTCGGATTC
TGCGGCTTTCTCCGATAGTGATGATTTTGACCACGAATGCGCCCGTGAAT
ATCTTGCCTCCAACGCTTACGTTTCTGATGCACACCTCTCATTTTTGGAG
CTCGTGCAGAATTCTTCAAGTGAATCCAATGGCGGTTCGTTGTTCGAGCT
GCAGAACCAAAAGCTTTTGCGCATCAACCTGCAACAGAACAAGTTTTCAA
TGGCTTGGATAAAGCACGGAACAAGAGTTGCATCGCTGGGGAATATAAGA
TTCAAGGCAGCGGGGATGCGTGATCAGCGACTAACTAACGTGTTGAAGAA
GACACTGACTGCAGAAGGAATGAAATTAGTCAAATGTGAGGGAAATGGAG
TTGTTTTTTGCGCGGATGAACAGAAGTTGTTGCATGTTTTGCAACTTGAC
GAAGAGGAGATTTTGTATGTCAACGGCAGCAATCTGCTAGCGATCTGCGC
AGACGTCAAATATGATATCAAGTTTATGACTGGAATGAATCTTGCATCAG
GTATATTTTTCGTGAAACTCATTGGGAAGGGTATGGTAACGTTCGGATGT
CATGGAGCGGTTGTCGCTCTTGCAGCCAGTGAGGCATCTCCCGTGTATAC
TGACCCTAATGCTACTGTTGCTTGGACGCATGCACCGACTGTTAAGGTAC
GTGATTTGCGGAACTTGTTTTCCGGGCTATCCATCATAGCTTGCTGACTT
TTGTTTCTCTTTGCAGATGGATGTGAGTCTCAAGTCGCTAGTTGGGAAAG
GGTCAGGAGAGGAAGTGCAACTGGAGTTCAAGCAGGGTTTGGTGGTCGTG
CAGCCACACCATCATGTTCCTGTACGAGAATCCATCAAACCCAGCGTGTT
GTAA

Coding sequence (CDS) from alignment at NODE_248_length_34309_cov_4.396809:28696..29749-

>Gcaud8430.t1 ID=Gcaud8430.t1|Name=Gcaud8430.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=984bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:28696..29749- (Gracilaria caudata M_176_S67 male)
ATGACTCACGCGGACATAAAGCGCTTTAAGCGCCTGGCTTCCACCACTCT
AGCCACCGTCTCAGCTGCAGCATTTTCGAAAGACAAAATGAATACCGAAT
CACGATGTCCCTCCGTTATCACCAACTTGGTTGCCAGGGCTGCCTCCAGT
GCCGCTAAACCAGCCCCTGTCATCGTCACGCCTGCCCCAGCCTCGGATTC
TGCGGCTTTCTCCGATAGTGATGATTTTGACCACGAATGCGCCCGTGAAT
ATCTTGCCTCCAACGCTTACGTTTCTGATGCACACCTCTCATTTTTGGAG
CTCGTGCAGAATTCTTCAAGTGAATCCAATGGCGGTTCGTTGTTCGAGCT
GCAGAACCAAAAGCTTTTGCGCATCAACCTGCAACAGAACAAGTTTTCAA
TGGCTTGGATAAAGCACGGAACAAGAGTTGCATCGCTGGGGAATATAAGA
TTCAAGGCAGCGGGGATGCGTGATCAGCGACTAACTAACGTGTTGAAGAA
GACACTGACTGCAGAAGGAATGAAATTAGTCAAATGTGAGGGAAATGGAG
TTGTTTTTTGCGCGGATGAACAGAAGTTGTTGCATGTTTTGCAACTTGAC
GAAGAGGAGATTTTGTATGTCAACGGCAGCAATCTGCTAGCGATCTGCGC
AGACGTCAAATATGATATCAAGTTTATGACTGGAATGAATCTTGCATCAG
GTATATTTTTCGTGAAACTCATTGGGAAGGGTATGGTAACGTTCGGATGT
CATGGAGCGGTTGTCGCTCTTGCAGCCAGTGAGGCATCTCCCGTGTATAC
TGACCCTAATGCTACTGTTGCTTGGACGCATGCACCGACTGTTAAGATGG
ATGTGAGTCTCAAGTCGCTAGTTGGGAAAGGGTCAGGAGAGGAAGTGCAA
CTGGAGTTCAAGCAGGGTTTGGTGGTCGTGCAGCCACACCATCATGTTCC
TGTACGAGAATCCATCAAACCCAGCGTGTTGTAA