Gcaud7546.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7546.t1
Unique NameGcaud7546.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length200
Homology
BLAST of Gcaud7546.t1 vs. uniprot
Match: A9TVD2_PHYPA (Predicted protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9TVD2_PHYPA)

HSP 1 Score: 104 bits (259), Expect = 8.750e-25
Identity = 63/148 (42.57%), Postives = 95/148 (64.19%), Query Frame = 0
Query:   55 VLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLKFPNRHTP-------PLPSRPSIAKPQANISKLNVASLRRYRSVYNL-DVAKDCSKDELVGAVKKHFEKAKVNESEVITSFLRQIARRGAS 194
            VLP  T+V +TGNNRTK  L+G HG V  A  LGGWH + LT+G  V++QRNAL V++ P+ H         P  S  S+     ++SKL VA+L+RYR  + L +V  + +K++L+ AV +HF   +++E++VI++F+ Q A+R  S
Sbjct:   26 VLPRHTKVLVTGNNRTKSVLVGLHGVVTKAVGLGGWHWLVLTNGDEVKLQRNALSVIEAPSGHEEHDENEDNPFSSGTSLVL-SVDLSKLEVAALKRYRRHFKLVEVGPNSTKEQLLHAVGRHFMSQELDETQVISAFM-QAAKRPRS 171          
BLAST of Gcaud7546.t1 vs. uniprot
Match: A0A1X6NV33_PORUM (SAP30_Sin3_bdg domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NV33_PORUM)

HSP 1 Score: 107 bits (266), Expect = 1.010e-23
Identity = 83/245 (33.88%), Postives = 102/245 (41.63%), Query Frame = 0
Query:   53 DPVLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSL-TDGGIVRVQRNALHVLKFPNRHTPPLPSRPSIAKPQ----------------------------------------------------------------------------------------------------ANISKLNVASLRRYRSVYNLDVAKDCSKDELVGAVKKHFEKAKVNESEVITSFLRQIARRGASPA 196
            D VLPPG+ VRI+GNNRTK  LIG+ G V+S+QTLGGWHEVSL   GG+VRVQRNAL VL       P +P  P    P                                                                                                     AN   L   SL RYR+VY L+VA DCS+DELV AV++HF  + V+E +VI+ FLR++ R  +SPA
Sbjct:  210 DAVLPPGSLVRISGNNRTKLQLIGKVGRVVSSQTLGGWHEVSLEAGGGVVRVQRNALEVLAL----APAVPGVPVHGHPTSTGRSGGXXXXXXXXXXXXXXXXXSATAPDNGSARHGHGSAPSRGNASGLVSSPADGGGSTSRAGDXKXXXXXXXXXXXXXXXXXXRLRVGGAGPGAGTVANFDALQFDSLNRYRTVYGLNVAVDCSRDELVRAVRRHFASSSVDELQVISDFLRRV-RHCSSPA 449          
BLAST of Gcaud7546.t1 vs. uniprot
Match: A0A7I8L194_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8L194_SPIIN)

HSP 1 Score: 91.7 bits (226), Expect = 1.110e-19
Identity = 64/156 (41.03%), Postives = 85/156 (54.49%), Query Frame = 0
Query:   55 VLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLKFPNR----HTPPLPSRPS----IAKPQ----ANISKLNVASLRRYRSVYNLDVAK-DCSKDELVGAVKKHFEKAKVNESEVITSFLRQIARRGASPAG 197
            VLPP T+V +TGNNRT+  L+G  G V  +  LGGWH + LT+G  V++QRNAL V++ P R    H   L S  S      +PQ     +I KL   SL RY   + LD      SK +L+ AV++HF    ++ES+VI  FL    R   S  G
Sbjct:   32 VLPPHTKVVVTGNNRTRSVLVGLQGVVKKSVGLGGWHWLVLTNGVEVKLQRNALSVIEAPTREQEDHCKSLLSGSSHLQFTTRPQQKLTVDIGKLGAVSLWRYWRHFKLDGKNVPSSKAQLIEAVERHFISQNLDESQVIADFLHAAKRLRQSVHG 187          
BLAST of Gcaud7546.t1 vs. uniprot
Match: A0A4D8ZAU6_SALSN (SAP30_Sin3_bdg domain-containing protein n=3 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZAU6_SALSN)

HSP 1 Score: 89.0 bits (219), Expect = 2.730e-18
Identity = 58/150 (38.67%), Postives = 86/150 (57.33%), Query Frame = 0
Query:   54 PVLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLKFP--NRHTPPLP-------SRPSIAKPQANISKLNVASLRRYRSVYNL-DVAKDCSKDELVGAVKKHFEKAKVN---ESEVITSFLRQIAR 190
            P LP  T+V ITGN+RT+ DL+G  G V  A  +GGWH + L++G  V++QRNAL V + P  N     +        +  S  K   +++KL+  SLRRY   Y+L D+A + +K++L+ A ++HF   KV+   E +VIT F     R
Sbjct:   68 PGLPRHTKVTITGNSRTRKDLVGMEGVVTKAGGIGGWHWLLLSNGEKVKLQRNALTVSEPPTGNEEDDDIDDSASGSDTNHSTCKEGVDLAKLSSESLRRYCEKYHLVDIASNPTKEQLIKAAQEHFSSQKVDGDEEEQVITEFSNAAKR 217          
BLAST of Gcaud7546.t1 vs. uniprot
Match: A0A1D1Z862_9ARAE (Histone deacetylase complex subunit SAP30L n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z862_9ARAE)

HSP 1 Score: 87.4 bits (215), Expect = 4.440e-18
Identity = 61/158 (38.61%), Postives = 85/158 (53.80%), Query Frame = 0
Query:   55 VLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLKFPNRHTP------PLPSRP---SIAKPQA----NISKLNVASLRRYRSVYNLDVA--KDCSKDELVGAVKKHFEKAKVNESEVITSFLRQIARRGASPAG 197
            VLPP T+V +TGNNRT+  L+G  G V  +  LGGWH + LT+G  V++QRNAL V++ P R         PL       S  +PQ     +I KL   SL RY   Y L+    +  SK++L+  V++HF   +++E +VI  FL    R   S  G
Sbjct:   28 VLPPQTKVVVTGNNRTRSVLVGLQGVVKKSVGLGGWHWLVLTNGVEVKLQRNALSVIEAPVREEQHECVQGPLSGASHFGSAKQPQGKLTVDIRKLGAVSLWRYWRHYKLEGKNFRPSSKEQLIEVVQRHFVSQQLDEFQVIAGFLHAAKRLRESVHG 185          
BLAST of Gcaud7546.t1 vs. uniprot
Match: UPI001CB92D9F (uncharacterized protein LOC122589311 isoform X1 n=2 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB92D9F)

HSP 1 Score: 72.0 bits (175), Expect = 5.920e-12
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 0
Query:   55 VLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLKFP 114
            VLPP T+V +TGNNRTK  L+G HG V  A  LGGWH + LT+G  V++QRNAL V++ P
Sbjct:   32 VLPPHTKVVVTGNNRTKSVLVGLHGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAP 91          
BLAST of Gcaud7546.t1 vs. uniprot
Match: A0A164ZQU4_DAUCS (SAP30_Sin3_bdg domain-containing protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A164ZQU4_DAUCS)

HSP 1 Score: 69.3 bits (168), Expect = 8.690e-11
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0
Query:   55 VLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLKFPN 115
            VLPP T+V +TGNNRTK  L+G HG V     LGGWH + LT+G  V++QRNAL V++ P+
Sbjct:   16 VLPPHTKVVVTGNNRTKSVLVGLHGVVKKPLGLGGWHWLVLTNGIDVKLQRNALSVVEPPS 76          
BLAST of Gcaud7546.t1 vs. uniprot
Match: A0A5A7QVK0_STRAF (Histone deacetylase complex subunit SAP30 homolog n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QVK0_STRAF)

HSP 1 Score: 68.9 bits (167), Expect = 1.090e-10
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 0
Query:   55 VLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLKFP 114
            VLPP T+V +TGNNRTK  L+G  G V  A  LGGWH + LT+G  V++QRNAL V++ P
Sbjct:   33 VLPPHTKVVVTGNNRTKSVLVGLRGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAP 92          
BLAST of Gcaud7546.t1 vs. uniprot
Match: UPI001C267018 (uncharacterized protein LOC121779358 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C267018)

HSP 1 Score: 65.9 bits (159), Expect = 3.340e-10
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0
Query:   56 LPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLKFP 114
            LP  T+V ITGNNRT+ DL+G  G V  A  +GGWH + L +G  V++QRNAL VL+ P
Sbjct:   66 LPRHTKVTITGNNRTRKDLVGLEGVVTKAGGIGGWHWLELNNGEEVKLQRNALTVLEPP 124          
BLAST of Gcaud7546.t1 vs. uniprot
Match: UPI001CB8C24C (uncharacterized protein LOC122580541 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8C24C)

HSP 1 Score: 66.6 bits (161), Expect = 4.490e-10
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 0
Query:   55 VLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLKFP 114
            VLPP T+V +TGNNRTK  L+G  G V  A   GGWH + LT+G  V++QRNAL V++ P
Sbjct:   21 VLPPDTKVVVTGNNRTKSLLVGLQGVVKKAVGSGGWHWLVLTNGIEVKLQRNALSVIEAP 80          
The following BLAST results are available for this feature:
BLAST of Gcaud7546.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A9TVD2_PHYPA8.750e-2542.57Predicted protein n=2 Tax=Physcomitrium patens Tax... [more]
A0A1X6NV33_PORUM1.010e-2333.88SAP30_Sin3_bdg domain-containing protein n=1 Tax=P... [more]
A0A7I8L194_SPIIN1.110e-1941.03Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A4D8ZAU6_SALSN2.730e-1838.67SAP30_Sin3_bdg domain-containing protein n=3 Tax=S... [more]
A0A1D1Z862_9ARAE4.440e-1838.61Histone deacetylase complex subunit SAP30L n=1 Tax... [more]
UPI001CB92D9F5.920e-1258.33uncharacterized protein LOC122589311 isoform X1 n=... [more]
A0A164ZQU4_DAUCS8.690e-1155.74SAP30_Sin3_bdg domain-containing protein n=2 Tax=D... [more]
A0A5A7QVK0_STRAF1.090e-1056.67Histone deacetylase complex subunit SAP30 homolog ... [more]
UPI001C2670183.340e-1054.24uncharacterized protein LOC121779358 n=1 Tax=Salvi... [more]
UPI001CB8C24C4.490e-1055.00uncharacterized protein LOC122580541 n=1 Tax=Erige... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038291SAP30, C-terminal domain superfamilyGENE3D6.10.160.20coord: 121..195
e-value: 1.9E-19
score: 71.3
IPR025718Histone deacetylase complex subunit SAP30, Sin3 binding domainPFAMPF13867SAP30_Sin3_bdgcoord: 137..187
e-value: 2.3E-17
score: 63.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..68
NoneNo IPR availablePANTHERPTHR13286:SF6HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30Lcoord: 55..189
IPR024145Histone deacetylase complex subunit SAP30/SAP30-likePANTHERPTHR13286SAP30coord: 55..189

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2481_length_5506_cov_3.952355contigNODE_2481_length_5506_cov_3.952355:2..599 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7546.t1Gcaud7546.t1Gracilaria caudata M_176_S67 malemRNANODE_2481_length_5506_cov_3.952355 2..599 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7546.t1 ID=Gcaud7546.t1|Name=Gcaud7546.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=200bp
XTPPLPPPSPTQPNPSPPSPASPTTPPPPRTVTPPSARPRPRPSHHRSNP
HTDPVLPPGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGI
VRVQRNALHVLKFPNRHTPPLPSRPSIAKPQANISKLNVASLRRYRSVYN
LDVAKDCSKDELVGAVKKHFEKAKVNESEVITSFLRQIARRGASPAGGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038291SAP30_C_sf
IPR025718SAP30_Sin3-bd
IPR024145His_deAcase_SAP30/SAP30L