Gcaud8107.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8107.t1
Unique Name	Gcaud8107.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	453

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1070_length_14265_cov_4.638281	contig	NODE_1070_length_14265_cov_4.638281:10979..12337 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4565.Traes_5BL_4AB318AA4.1
PFAMs	p450
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00607,RC00660,RC00923,RC01222
KEGG ko	ko:K00512
KEGG Reaction	R02211,R03783,R04852,R04853,R08517,R08518
KEGG Pathway	ko00140,ko01100,ko04913,ko04917,ko04927,ko04934,map00140,map01100,map04913,map04917,map04927,map04934
KEGG Module	M00109,M00110
Evalue	3.29e-13
EggNOG OGs	COG2124@1\|root,KOG0156@2759\|Eukaryota,37HKM@33090\|Viridiplantae,3G7FU@35493\|Streptophyta,3KRQ2@4447\|Liliopsida,3I305@38820\|Poales
EC	1.14.14.19,1.14.14.32
Description	Belongs to the cytochrome P450 family
COG category	Q
BRITE	ko00000,ko00001,ko00002,ko00199,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8107	Gcaud8107	Gracilaria caudata M_176_S67 male	gene	NODE_1070_length_14265_cov_4.638281 10979..12337 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8107.t1.stop1	Gcaud8107.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1070_length_14265_cov_4.638281 10979..10981 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8107.t1.CDS1	Gcaud8107.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1070_length_14265_cov_4.638281 10979..12337 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8107.t1.exon1	Gcaud8107.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1070_length_14265_cov_4.638281 10979..12337 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8107.t1.start1	Gcaud8107.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1070_length_14265_cov_4.638281 12335..12337 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8107.t1	Gcaud8107.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1070_length_14265_cov_4.638281 10979..12337 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1070_length_14265_cov_4.638281:10979..12337-
coding sequence from alignment at NODE_1070_length_14265_cov_4.638281:10979..12337-

mRNA sequence

>Gcaud8107.t1 ID=Gcaud8107.t1|Name=Gcaud8107.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=453bp
MVRTSGPDITPATIQRFFTAKHGNKERFGSIAAAFAIDPFILMKIGQSAE
GAHKALKDGELLIIRDWDLFVRCSVELGHRGDATPEIHFRAFPYDSFSAM
PARYGACPYGHWEDYKDSSPYIISQELFPKQIPIMERIIDDHLGQYVGKS
GEVGTIMRLLIWNLLAYTTYGVMPSDDTLALMKDSDANMGEFDYAVRLTG
LDIPYEWSPALTARMDNLKQWSTRTVEDRVANIDDYADKPVTDILTDHLL
NRPHILKELEGQVRGTFSFGHNNVHCAIAGALVCNALKGDKVYEYLMRDP
EQNLDRVVRESMRLYTAVPTSRTVRDEDNFELDGKRLKTGTVVMMSTYLV
DTDPRSWERPLEFEPERFEGMEEIGYMTGRGFAPFGVRADGVGMEGRPCG
GRLFSVHLIGTVLKKVLRDYKFTPVGGGYFDFQQHCGGCRYKGNCVVTVE
RR*

spliced messenger RNA

>Gcaud8107.t1 ID=Gcaud8107.t1|Name=Gcaud8107.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1359bp|location=Sequence derived from alignment at NODE_1070_length_14265_cov_4.638281:10979..12337- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGCACGTCCGGGCCGGACATCACCCCGGCCACGATCCAGCGCTT
CTTCACCGCGAAGCACGGGAACAAAGAACGCTTCGGGAGCATCGCGGCCG
CGTTCGCCATCGACCCCTTCATCCTGATGAAAATCGGCCAGAGTGCCGAG
GGGGCACACAAGGCGCTCAAGGACGGCGAGCTGCTCATCATCCGCGACTG
GGACCTCTTCGTGCGCTGCTCGGTCGAGCTGGGCCACCGCGGCGACGCCA
CGCCGGAGATCCACTTCCGCGCTTTCCCATACGACTCGTTCTCCGCGATG
CCCGCGCGCTACGGTGCGTGCCCGTACGGGCACTGGGAGGACTACAAGGA
CAGCTCTCCCTATATCATCTCTCAGGAGCTCTTCCCCAAGCAGATCCCCA
TCATGGAGCGCATCATCGACGACCATCTCGGACAGTACGTCGGCAAGAGC
GGCGAGGTCGGCACCATCATGCGTCTGCTTATCTGGAACCTGCTCGCGTA
CACGACGTACGGCGTCATGCCCAGCGACGACACGCTGGCCCTGATGAAGG
ACAGCGACGCGAATATGGGCGAGTTCGACTACGCGGTCCGCCTAACCGGG
TTGGACATTCCGTACGAGTGGTCCCCCGCGCTCACCGCGAGGATGGACAA
CCTCAAACAGTGGAGCACCCGCACGGTGGAGGACCGCGTCGCCAATATCG
ACGACTACGCCGACAAACCCGTCACCGATATCCTCACAGACCATCTTCTG
AACCGCCCGCATATACTGAAGGAACTCGAAGGGCAGGTGCGCGGCACGTT
CTCGTTCGGACATAACAACGTGCACTGCGCCATCGCCGGCGCGCTCGTCT
GCAACGCGCTCAAAGGGGATAAGGTTTACGAATACCTCATGCGCGACCCG
GAGCAGAACCTCGACCGGGTTGTGCGCGAATCCATGCGGCTGTACACGGC
CGTGCCCACGTCGCGCACCGTGCGAGATGAGGACAACTTCGAGCTGGACG
GGAAGCGGCTCAAGACGGGGACGGTGGTGATGATGTCGACGTATCTAGTT
GATACGGACCCGCGGTCGTGGGAGCGGCCGCTAGAGTTCGAGCCGGAGCG
GTTCGAGGGAATGGAGGAGATCGGGTACATGACCGGGCGAGGGTTTGCGC
CGTTCGGGGTGCGCGCGGATGGAGTGGGCATGGAGGGCCGTCCTTGTGGT
GGGCGTTTGTTCTCGGTGCATCTGATCGGCACGGTGCTGAAAAAGGTGTT
GCGCGACTACAAGTTCACGCCGGTTGGGGGCGGATACTTCGACTTCCAGC
AGCACTGTGGTGGGTGCCGGTATAAGGGAAATTGCGTTGTTACGGTTGAG
CGGCGGTGA

protein sequence of Gcaud8107.t1

>Gcaud8107.t1 ID=Gcaud8107.t1|Name=Gcaud8107.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=453bp
MVRTSGPDITPATIQRFFTAKHGNKERFGSIAAAFAIDPFILMKIGQSAE
GAHKALKDGELLIIRDWDLFVRCSVELGHRGDATPEIHFRAFPYDSFSAM
PARYGACPYGHWEDYKDSSPYIISQELFPKQIPIMERIIDDHLGQYVGKS
GEVGTIMRLLIWNLLAYTTYGVMPSDDTLALMKDSDANMGEFDYAVRLTG
LDIPYEWSPALTARMDNLKQWSTRTVEDRVANIDDYADKPVTDILTDHLL
NRPHILKELEGQVRGTFSFGHNNVHCAIAGALVCNALKGDKVYEYLMRDP
EQNLDRVVRESMRLYTAVPTSRTVRDEDNFELDGKRLKTGTVVMMSTYLV
DTDPRSWERPLEFEPERFEGMEEIGYMTGRGFAPFGVRADGVGMEGRPCG
GRLFSVHLIGTVLKKVLRDYKFTPVGGGYFDFQQHCGGCRYKGNCVVTVE
RR*

mRNA from alignment at NODE_1070_length_14265_cov_4.638281:10979..12337-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8107.t1 ID=Gcaud8107.t1|Name=Gcaud8107.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1359bp|location=Sequence derived from alignment at NODE_1070_length_14265_cov_4.638281:10979..12337- (Gracilaria caudata M_176_S67 male)
ATGGTGCGCACGTCCGGGCCGGACATCACCCCGGCCACGATCCAGCGCTT
CTTCACCGCGAAGCACGGGAACAAAGAACGCTTCGGGAGCATCGCGGCCG
CGTTCGCCATCGACCCCTTCATCCTGATGAAAATCGGCCAGAGTGCCGAG
GGGGCACACAAGGCGCTCAAGGACGGCGAGCTGCTCATCATCCGCGACTG
GGACCTCTTCGTGCGCTGCTCGGTCGAGCTGGGCCACCGCGGCGACGCCA
CGCCGGAGATCCACTTCCGCGCTTTCCCATACGACTCGTTCTCCGCGATG
CCCGCGCGCTACGGTGCGTGCCCGTACGGGCACTGGGAGGACTACAAGGA
CAGCTCTCCCTATATCATCTCTCAGGAGCTCTTCCCCAAGCAGATCCCCA
TCATGGAGCGCATCATCGACGACCATCTCGGACAGTACGTCGGCAAGAGC
GGCGAGGTCGGCACCATCATGCGTCTGCTTATCTGGAACCTGCTCGCGTA
CACGACGTACGGCGTCATGCCCAGCGACGACACGCTGGCCCTGATGAAGG
ACAGCGACGCGAATATGGGCGAGTTCGACTACGCGGTCCGCCTAACCGGG
TTGGACATTCCGTACGAGTGGTCCCCCGCGCTCACCGCGAGGATGGACAA
CCTCAAACAGTGGAGCACCCGCACGGTGGAGGACCGCGTCGCCAATATCG
ACGACTACGCCGACAAACCCGTCACCGATATCCTCACAGACCATCTTCTG
AACCGCCCGCATATACTGAAGGAACTCGAAGGGCAGGTGCGCGGCACGTT
CTCGTTCGGACATAACAACGTGCACTGCGCCATCGCCGGCGCGCTCGTCT
GCAACGCGCTCAAAGGGGATAAGGTTTACGAATACCTCATGCGCGACCCG
GAGCAGAACCTCGACCGGGTTGTGCGCGAATCCATGCGGCTGTACACGGC
CGTGCCCACGTCGCGCACCGTGCGAGATGAGGACAACTTCGAGCTGGACG
GGAAGCGGCTCAAGACGGGGACGGTGGTGATGATGTCGACGTATCTAGTT
GATACGGACCCGCGGTCGTGGGAGCGGCCGCTAGAGTTCGAGCCGGAGCG
GTTCGAGGGAATGGAGGAGATCGGGTACATGACCGGGCGAGGGTTTGCGC
CGTTCGGGGTGCGCGCGGATGGAGTGGGCATGGAGGGCCGTCCTTGTGGT
GGGCGTTTGTTCTCGGTGCATCTGATCGGCACGGTGCTGAAAAAGGTGTT
GCGCGACTACAAGTTCACGCCGGTTGGGGGCGGATACTTCGACTTCCAGC
AGCACTGTGGTGGGTGCCGGTATAAGGGAAATTGCGTTGTTACGGTTGAG
CGGCGGTGA

Coding sequence (CDS) from alignment at NODE_1070_length_14265_cov_4.638281:10979..12337-

>Gcaud8107.t1 ID=Gcaud8107.t1|Name=Gcaud8107.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1359bp|location=Sequence derived from alignment at NODE_1070_length_14265_cov_4.638281:10979..12337- (Gracilaria caudata M_176_S67 male)
ATGGTGCGCACGTCCGGGCCGGACATCACCCCGGCCACGATCCAGCGCTT
CTTCACCGCGAAGCACGGGAACAAAGAACGCTTCGGGAGCATCGCGGCCG
CGTTCGCCATCGACCCCTTCATCCTGATGAAAATCGGCCAGAGTGCCGAG
GGGGCACACAAGGCGCTCAAGGACGGCGAGCTGCTCATCATCCGCGACTG
GGACCTCTTCGTGCGCTGCTCGGTCGAGCTGGGCCACCGCGGCGACGCCA
CGCCGGAGATCCACTTCCGCGCTTTCCCATACGACTCGTTCTCCGCGATG
CCCGCGCGCTACGGTGCGTGCCCGTACGGGCACTGGGAGGACTACAAGGA
CAGCTCTCCCTATATCATCTCTCAGGAGCTCTTCCCCAAGCAGATCCCCA
TCATGGAGCGCATCATCGACGACCATCTCGGACAGTACGTCGGCAAGAGC
GGCGAGGTCGGCACCATCATGCGTCTGCTTATCTGGAACCTGCTCGCGTA
CACGACGTACGGCGTCATGCCCAGCGACGACACGCTGGCCCTGATGAAGG
ACAGCGACGCGAATATGGGCGAGTTCGACTACGCGGTCCGCCTAACCGGG
TTGGACATTCCGTACGAGTGGTCCCCCGCGCTCACCGCGAGGATGGACAA
CCTCAAACAGTGGAGCACCCGCACGGTGGAGGACCGCGTCGCCAATATCG
ACGACTACGCCGACAAACCCGTCACCGATATCCTCACAGACCATCTTCTG
AACCGCCCGCATATACTGAAGGAACTCGAAGGGCAGGTGCGCGGCACGTT
CTCGTTCGGACATAACAACGTGCACTGCGCCATCGCCGGCGCGCTCGTCT
GCAACGCGCTCAAAGGGGATAAGGTTTACGAATACCTCATGCGCGACCCG
GAGCAGAACCTCGACCGGGTTGTGCGCGAATCCATGCGGCTGTACACGGC
CGTGCCCACGTCGCGCACCGTGCGAGATGAGGACAACTTCGAGCTGGACG
GGAAGCGGCTCAAGACGGGGACGGTGGTGATGATGTCGACGTATCTAGTT
GATACGGACCCGCGGTCGTGGGAGCGGCCGCTAGAGTTCGAGCCGGAGCG
GTTCGAGGGAATGGAGGAGATCGGGTACATGACCGGGCGAGGGTTTGCGC
CGTTCGGGGTGCGCGCGGATGGAGTGGGCATGGAGGGCCGTCCTTGTGGT
GGGCGTTTGTTCTCGGTGCATCTGATCGGCACGGTGCTGAAAAAGGTGTT
GCGCGACTACAAGTTCACGCCGGTTGGGGGCGGATACTTCGACTTCCAGC
AGCACTGTGGTGGGTGCCGGTATAAGGGAAATTGCGTTGTTACGGTTGAG
CGGCGGTGA