Gcaud8523.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8523.t1
Unique NameGcaud8523.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length259
Homology
BLAST of Gcaud8523.t1 vs. uniprot
Match: A0A2V3IS99_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IS99_9FLOR)

HSP 1 Score: 252 bits (643), Expect = 2.060e-80
Identity = 134/239 (56.07%), Postives = 175/239 (73.22%), Query Frame = 0
Query:   17 LIMLLHFSRAQSLHDPDGPIWKPILESRTQTLVQNNAVARQISARSVLNLQRKIVARGSCSRPICFALDGSGSIPPGDYEFQLDLVSLLAALAALDDAAQFSAVQYGLSTVPISLETSNITLFLDRVRASTQMNAGRTFVGAGIASCLRRVRRGMSETVDGRIFVLGDGRANFAVEFLDTILGEIDEEEVISVGIGAQVKKELLLQIAGGIAANVFLFDSYSNINTAGVSALLSNICNF 255
            ++ LL F  +++  D + P  + +LE+RTQ L+  N VA++I   SV NLQR+++ RG C+RP+CFALDGS SIP  D+EFQ  L+SLLA+ AA+D  ++FSAVQYGL+T  ISL TSNITLFL RV  S Q+NA RTF+ AG+ASCLR+VRRG +ET  G I VLGDGRANFA + LD +L E+D+E V+SVG+G  +   LL +++  +   VFLFDSYS+IN   VSALLS IC F
Sbjct:   15 IVFLLCFYGSEAQADVNNPEVQQLLEARTQVLLDTNQVAKRIGRTSVFNLQREVLVRGFCNRPLCFALDGSASIPAADFEFQRGLISLLASFAAIDTESEFSAVQYGLATTGISLPTSNITLFLQRVSLSRQVNASRTFISAGLASCLRQVRRG-NET-SGIIVVLGDGRANFATDSLDQVLQEVDDELVVSVGVGTFLNPNLLKKLSRWVPERVFLFDSYSDINAKAVSALLSRICWF 251          
BLAST of Gcaud8523.t1 vs. uniprot
Match: A0A2V3IQR0_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQR0_9FLOR)

HSP 1 Score: 232 bits (591), Expect = 6.430e-73
Identity = 124/246 (50.41%), Postives = 169/246 (68.70%), Query Frame = 0
Query:   14 YTSLIMLLHFSRAQSL--HDPDGPIWKPILESRTQTLVQNNAVARQISARSVLNLQRKIVARGSCSRPICFALDGSGSIPPGDYEFQLDLVSLLAALAALDDAAQFSAVQYGLSTVPISLETSNITLFLDRVRASTQMNAGRTFVGAGIASCLRRVRRGMSETVDGRIFVLGDGRANFAVEFLDTILGEIDEEEVISVGIGAQVKKELLLQIAGGIAANVFLFDSYSNINTAGVSALLSNICNFAS 257
            + S I+LL  S + ++   DP    WK +LE+RTQ L ++N VA+++    VL +Q+ IV  G C    CFA+DGS SI P  ++FQ DLV LLA+ AALDD A+FSAVQYGL+  PISLETSNIT FL  +  + Q NA RTF+GAGIA+C+RR+RRG +E+  G IFVLGDG+ANFA+ FLD +L E+ +E +++VG G  V + LL  IAG    +VFL  SY++ +   + +LL NIC+F +
Sbjct:    6 FISFILLLSLSLSTTVPQRDPLTEPWKSLLEARTQALTEDNTVAKELGESLVLKIQQNIVRHGKCDSRSCFAIDGSASISPSAFQFQKDLVKLLASFAALDDEAEFSAVQYGLANRPISLETSNITEFLTSLETAKQANASRTFIGAGIATCIRRIRRGEAESAKGTIFVLGDGQANFALGFLDEVLAEVKDERLVAVGFG-NVNRSLLETIAGTDQDSVFLLPSYADFHII-IYSLLLNICSFCN 249          
BLAST of Gcaud8523.t1 vs. uniprot
Match: A0A2V3ID60_9FLOR (Cartilage matrix protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID60_9FLOR)

HSP 1 Score: 78.2 bits (191), Expect = 9.720e-14
Identity = 59/174 (33.91%), Postives = 83/174 (47.70%), Query Frame = 0
Query:   68 RKIVARGSCSRPICFALDGSGSIPPGDYEFQLDLVSLLAALAALD-DAAQFSAVQYGLSTVPISLETSNITLFLDRVRASTQMNAGRTFVGAGIASCLRRVRRGMSETVDGRIFVLGDGRANFAVEFLDTILGEID---EEEVISVGIGAQVKKELLLQIAGGIAANVFLFDSY 237
            R++V R  C+  +CFALDGS S+ P DYE Q D V L++A+   + + + FSAVQYG    PIS  T +I  F  +V AS       + +G GI  C  ++       V  +I V GDGR     + +       D      + +VG+G      LL  IA      +F  D Y
Sbjct:   36 RRMVERNGCNLNVCFALDGSASVTPLDYEMQKDFVQLMSAVLDFEVENSSFSAVQYGDQVSPISPLTQSIDDFNLKVHASNISAFQGSSIGKGITYCSNQLLELADNPV--KIIVFGDGRETSKTDAVSIAASFKDFHPNGRLSTVGVGFP-NTVLLKTIAEAGGGRLFEIDEY 206          
The following BLAST results are available for this feature:
BLAST of Gcaud8523.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IS99_9FLOR2.060e-8056.07VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IQR0_9FLOR6.430e-7350.41VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3ID60_9FLOR9.720e-1433.91Cartilage matrix protein n=1 Tax=Gracilariopsis ch... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 77..242
e-value: 1.7E-5
score: 34.3
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 80..240
e-value: 7.6E-10
score: 39.3
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 79..252
score: 11.873031
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 73..257
e-value: 2.1E-15
score: 58.9
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 75..242
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..258
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
NoneNo IPR availableCDDcd00198vWFAcoord: 80..232
e-value: 4.58878E-8
score: 49.4866

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_243_length_34547_cov_4.802386contigNODE_243_length_34547_cov_4.802386:21741..22517 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8523.t1Gcaud8523.t1Gracilaria caudata M_176_S67 malemRNANODE_243_length_34547_cov_4.802386 21741..22517 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8523.t1 ID=Gcaud8523.t1|Name=Gcaud8523.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=259bp
MSSEMNVFTNTLLYTSLIMLLHFSRAQSLHDPDGPIWKPILESRTQTLVQ
NNAVARQISARSVLNLQRKIVARGSCSRPICFALDGSGSIPPGDYEFQLD
LVSLLAALAALDDAAQFSAVQYGLSTVPISLETSNITLFLDRVRASTQMN
AGRTFVGAGIASCLRRVRRGMSETVDGRIFVLGDGRANFAVEFLDTILGE
IDEEEVISVGIGAQVKKELLLQIAGGIAANVFLFDSYSNINTAGVSALLS
NICNFASV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf