Gcaud8518.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8518.t1
Unique NameGcaud8518.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_243_length_34547_cov_4.802386contigNODE_243_length_34547_cov_4.802386:7852..8496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8518Gcaud8518Gracilaria caudata M_176_S67 malegeneNODE_243_length_34547_cov_4.802386 7852..8496 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8518.t1.start1Gcaud8518.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_243_length_34547_cov_4.802386 7852..7854 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8518.t1.CDS1Gcaud8518.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_243_length_34547_cov_4.802386 7852..8496 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8518.t1.exon1Gcaud8518.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_243_length_34547_cov_4.802386 7852..8496 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8518.t1.stop1Gcaud8518.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_243_length_34547_cov_4.802386 8494..8496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8518.t1Gcaud8518.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_243_length_34547_cov_4.802386 7852..8496 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8518.t1 ID=Gcaud8518.t1|Name=Gcaud8518.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=215bp
MKFAITLPFLLISASIATAATLQSESHEWTTVEESASSSSLSSGLTRVSV
RGWQERALEKATNELYTLKKELRMVEAIYKCEKKKSKMLRDLFRKKKSSP
CSRRMNGKDRKCHKRYGLRKQVKRGQRMCRRNKSCLKKYVWPLQWKLKKL
MADCKCENGASIMKMIWKTKKIRCGKGRKAWKVKKDIGKLKKRITYLEKM
IMIKPSVAPRPKRE*
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spliced messenger RNA

>Gcaud8518.t1 ID=Gcaud8518.t1|Name=Gcaud8518.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=645bp|location=Sequence derived from alignment at NODE_243_length_34547_cov_4.802386:7852..8496+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTCGCAATCACTCTTCCCTTTCTGCTGATCTCTGCATCCATTGC
GACGGCCGCTACTTTGCAATCCGAATCCCACGAGTGGACAACTGTAGAAG
AATCCGCATCTTCATCTTCGTTGTCTTCCGGTCTGACAAGAGTTTCTGTG
CGTGGGTGGCAAGAAAGGGCTTTGGAGAAGGCTACAAACGAACTGTACAC
ATTGAAAAAGGAGTTAAGAATGGTCGAAGCGATCTATAAGTGCGAGAAGA
AGAAATCAAAGATGCTTCGCGACTTGTTCAGGAAGAAGAAGTCATCTCCG
TGTAGCAGGCGCATGAATGGTAAGGACAGGAAGTGCCACAAACGGTATGG
TTTACGAAAGCAGGTGAAGCGGGGTCAGAGAATGTGTAGAAGAAACAAGA
GCTGTTTGAAGAAGTACGTGTGGCCCCTTCAGTGGAAACTGAAGAAGTTA
ATGGCAGACTGCAAATGTGAAAACGGGGCTTCGATTATGAAGATGATATG
GAAGACCAAGAAGATTCGGTGCGGGAAGGGTAGAAAAGCTTGGAAGGTGA
AGAAAGATATAGGAAAGTTGAAGAAAAGGATCACGTACTTGGAGAAAATG
ATAATGATAAAGCCTAGTGTGGCTCCGAGACCGAAGCGGGAATGA
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protein sequence of Gcaud8518.t1

>Gcaud8518.t1 ID=Gcaud8518.t1|Name=Gcaud8518.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=215bp
MKFAITLPFLLISASIATAATLQSESHEWTTVEESASSSSLSSGLTRVSV
RGWQERALEKATNELYTLKKELRMVEAIYKCEKKKSKMLRDLFRKKKSSP
CSRRMNGKDRKCHKRYGLRKQVKRGQRMCRRNKSCLKKYVWPLQWKLKKL
MADCKCENGASIMKMIWKTKKIRCGKGRKAWKVKKDIGKLKKRITYLEKM
IMIKPSVAPRPKRE*
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mRNA from alignment at NODE_243_length_34547_cov_4.802386:7852..8496+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8518.t1 ID=Gcaud8518.t1|Name=Gcaud8518.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=645bp|location=Sequence derived from alignment at NODE_243_length_34547_cov_4.802386:7852..8496+ (Gracilaria caudata M_176_S67 male)
ATGAAGTTCGCAATCACTCTTCCCTTTCTGCTGATCTCTGCATCCATTGC
GACGGCCGCTACTTTGCAATCCGAATCCCACGAGTGGACAACTGTAGAAG
AATCCGCATCTTCATCTTCGTTGTCTTCCGGTCTGACAAGAGTTTCTGTG
CGTGGGTGGCAAGAAAGGGCTTTGGAGAAGGCTACAAACGAACTGTACAC
ATTGAAAAAGGAGTTAAGAATGGTCGAAGCGATCTATAAGTGCGAGAAGA
AGAAATCAAAGATGCTTCGCGACTTGTTCAGGAAGAAGAAGTCATCTCCG
TGTAGCAGGCGCATGAATGGTAAGGACAGGAAGTGCCACAAACGGTATGG
TTTACGAAAGCAGGTGAAGCGGGGTCAGAGAATGTGTAGAAGAAACAAGA
GCTGTTTGAAGAAGTACGTGTGGCCCCTTCAGTGGAAACTGAAGAAGTTA
ATGGCAGACTGCAAATGTGAAAACGGGGCTTCGATTATGAAGATGATATG
GAAGACCAAGAAGATTCGGTGCGGGAAGGGTAGAAAAGCTTGGAAGGTGA
AGAAAGATATAGGAAAGTTGAAGAAAAGGATCACGTACTTGGAGAAAATG
ATAATGATAAAGCCTAGTGTGGCTCCGAGACCGAAGCGGGAATGA
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Coding sequence (CDS) from alignment at NODE_243_length_34547_cov_4.802386:7852..8496+

>Gcaud8518.t1 ID=Gcaud8518.t1|Name=Gcaud8518.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=645bp|location=Sequence derived from alignment at NODE_243_length_34547_cov_4.802386:7852..8496+ (Gracilaria caudata M_176_S67 male)
ATGAAGTTCGCAATCACTCTTCCCTTTCTGCTGATCTCTGCATCCATTGC
GACGGCCGCTACTTTGCAATCCGAATCCCACGAGTGGACAACTGTAGAAG
AATCCGCATCTTCATCTTCGTTGTCTTCCGGTCTGACAAGAGTTTCTGTG
CGTGGGTGGCAAGAAAGGGCTTTGGAGAAGGCTACAAACGAACTGTACAC
ATTGAAAAAGGAGTTAAGAATGGTCGAAGCGATCTATAAGTGCGAGAAGA
AGAAATCAAAGATGCTTCGCGACTTGTTCAGGAAGAAGAAGTCATCTCCG
TGTAGCAGGCGCATGAATGGTAAGGACAGGAAGTGCCACAAACGGTATGG
TTTACGAAAGCAGGTGAAGCGGGGTCAGAGAATGTGTAGAAGAAACAAGA
GCTGTTTGAAGAAGTACGTGTGGCCCCTTCAGTGGAAACTGAAGAAGTTA
ATGGCAGACTGCAAATGTGAAAACGGGGCTTCGATTATGAAGATGATATG
GAAGACCAAGAAGATTCGGTGCGGGAAGGGTAGAAAAGCTTGGAAGGTGA
AGAAAGATATAGGAAAGTTGAAGAAAAGGATCACGTACTTGGAGAAAATG
ATAATGATAAAGCCTAGTGTGGCTCCGAGACCGAAGCGGGAATGA
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