Gcaud8522.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8522.t1
Unique NameGcaud8522.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length244
Homology
BLAST of Gcaud8522.t1 vs. uniprot
Match: A0A2V3ISA4_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISA4_9FLOR)

HSP 1 Score: 303 bits (775), Expect = 3.190e-101
Identity = 152/234 (64.96%), Postives = 182/234 (77.78%), Query Frame = 0
Query:   10 ALFAAAQAVVNVARAQDRINSLNTPLLADPMSQAAVSEALQIAEDTSCDPNICFALDGSGSISEDEFQLQLDFVNIIAGVVALDEDSQYAGIQYGLRPRFISRLTKDADKFLIDVKATLQLKSPRTFIAPGIAGCMRQLNRVKGEANKIILLGDGRSTFDSRDPPLDPPSIAQQFLSEPNNAISAVAVSFPNTAMLEAITGTPDRVFKVDDWFSVLDVITQLVEEVCGFDQVEF 243
            A FA   AVV  AR    I +LN+PL     ++A +  AL+I E+T C+PN+CFA+DGS SI++DEFQLQLDFV +I G+V+LDE S Y+ IQYGLRP+F+SR T+DA  FL+ V+ T QL+S RTFIAPGI GCMRQ  RV+G+ANKIILLGDGRSTFDSRDPPLDPPSIA QFL+EPNN+I AV VSF  T +LE ITG PDRVF V DW SV+DV+  LVE+VCG D VEF
Sbjct:   11 AFFAVCFAVVPEAR----IEALNSPLTTGAANRAQIDRALEIVEETGCEPNLCFAIDGSSSITDDEFQLQLDFVALITGLVSLDEQSGYSAIQYGLRPKFMSRFTQDAAAFLLKVEGTRQLRSVRTFIAPGIGGCMRQFRRVRGQANKIILLGDGRSTFDSRDPPLDPPSIAAQFLAEPNNSICAVGVSFDTTELLEEITGDPDRVFSVADWMSVVDVLADLVEQVCGADAVEF 240          
BLAST of Gcaud8522.t1 vs. uniprot
Match: A0A2V3IQR5_9FLOR (Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQR5_9FLOR)

HSP 1 Score: 264 bits (674), Expect = 8.040e-86
Identity = 141/244 (57.79%), Postives = 168/244 (68.85%), Query Frame = 0
Query:    1 MIRILIWLFALFAAAQAVVNVARAQDRINSLNTPLLADPMSQAAVSEALQIAEDTSCDPNICFALDGSGSISEDEFQLQLDFVNIIAGVVALDEDSQYAGIQYGLRPRFISRLTKDADKFLIDVKATLQLKSPRTFIAPGIAGCMRQLNRVKGEANKIILLGDGRSTFDSRDPPLDPPSIAQQFLSEPNNAISAVAVSFP-NTAMLEAITGTPDRVFKVDDWFSVLDVITQLVEEVCGFDQVEF 243
            M R +I  FAL AAA A V    A  RI+ L+TPL     ++A V  ALQIAE T CDPNICFA+DGSGS+   EFQL+ DF N++A VVA DE +++A +QYGLRP+FISRLT+DAD FL  V  T  L +PRTFIAPG+AGC+RQ   +KGE   I+LLGDGRS FDS+ PPLDP SIAQ FL+ PNN ISAV V F  +  ML  I G  + VF V  W  V  V+ +LV EVCG D VEF
Sbjct:    1 MFRPIILFFALCAAAFATVTTTSADRRIDELDTPLTKGTANEAEVQLALQIAEKTRCDPNICFAVDGSGSMDVTEFQLEKDFTNLVAAVVAYDEQARFAAVQYGLRPKFISRLTEDADAFLEAVHYTESLNAPRTFIAPGLAGCIRQFYYLKGEPKHIVLLGDGRSNFDSKLPPLDPVSIAQAFLANPNNTISAVGVGFDADDTMLTNIAGGEENVFNVGQWLEVTTVLAELVGEVCGLDAVEF 244          
BLAST of Gcaud8522.t1 vs. uniprot
Match: A0A2V3IPP3_9FLOR (Collagen alpha-6(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPP3_9FLOR)

HSP 1 Score: 209 bits (532), Expect = 2.540e-64
Identity = 107/233 (45.92%), Postives = 149/233 (63.95%), Query Frame = 0
Query:    5 LIWLFALFAAAQAVVNVARAQDRINSLNTPLLADPMSQAAVSEALQIAEDTSCDPNICFALDGSGSISEDEFQLQLDFVNIIAGVVALDEDSQYAGIQYGLRPRFISRLTKDADKFLIDVKATLQLKSPRTFIAPGIAGCMRQLNRVKGEANKIILLGDGRSTFDSRDPPLDPPSIAQQFLSEPNNAISAVAVSFPNTAMLEAITGTPDRVFKVDDWFSVLDVITQLVEEVCG 237
            +I+ F  F    +  +   A   +   N+ L     +   V  A+ +     C+ NICFA+DGSG +   +F++QLDF+N++AG+V+LD  S+YA +QYG R   ISRLT+D   FL++VK T+Q  S RTF+A GI+ C RQL R K  A KI++LGDGRS F +  PP DP S++Q FLS+P++ I AV V+F +T+MLE ITG   +VF V DW SVLD +  LV +VCG
Sbjct:    5 MIFFFIAFVRLTSAFSYQTALRSVLDPNSLLTKSEENMKFVKAAMDVVRKKKCNLNICFAVDGSGYMHGKDFKMQLDFINLVAGIVSLDPTSRYAAVQYGRRSSVISRLTRDTKSFLLNVKGTVQQCSSRTFVARGISRCARQLRRAKRGAKKIVVLGDGRSRFQTYGPPRDPVSVSQAFLSDPSHGICAVGVNFRDTSMLEQITGDASKVFMVSDWESVLDALDALVVQVCG 237          
BLAST of Gcaud8522.t1 vs. uniprot
Match: A0A2V3ID60_9FLOR (Cartilage matrix protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID60_9FLOR)

HSP 1 Score: 115 bits (287), Expect = 7.820e-28
Identity = 69/191 (36.13%), Postives = 106/191 (55.50%), Query Frame = 0
Query:   50 QIAEDTSCDPNICFALDGSGSISEDEFQLQLDFVNIIAGVVALD-EDSQYAGIQYGLRPRFISRLTKDADKFLIDVKATLQLKSPRTFIAPGIAGCMRQLNRVKGEANKIILLGDGRSTFDSRDPPLDPPSIAQQFLS-EPNNAISAVAVSFPNTAMLEAITGTPD-RVFKVDDWFSVLDVITQLVEEVCG 237
            ++ E   C+ N+CFALDGS S++  ++++Q DFV +++ V+  + E+S ++ +QYG +   IS LT+  D F + V A+       + I  GI  C  QL  +     KII+ GDGR T  +     D  SIA  F    PN  +S V V FPNT +L+ I      R+F++D++   LD++  L  EVCG
Sbjct:   37 RMVERNGCNLNVCFALDGSASVTPLDYEMQKDFVQLMSAVLDFEVENSSFSAVQYGDQVSPISPLTQSIDDFNLKVHASNISAFQGSSIGKGITYCSNQLLELADNPVKIIVFGDGRETSKT-----DAVSIAASFKDFHPNGRLSTVGVGFPNTVLLKTIAEAGGGRLFEIDEYIDALDLVVDLFLEVCG 222          
BLAST of Gcaud8522.t1 vs. uniprot
Match: R7Q5C2_CHOCR (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5C2_CHOCR)

HSP 1 Score: 110 bits (274), Expect = 1.540e-25
Identity = 69/207 (33.33%), Postives = 110/207 (53.14%), Query Frame = 0
Query:   34 PLLADPMSQAAVSEALQIAEDTSCDPNICFALDGSGSISEDEFQLQLDFVNIIAGVVALDEDSQYAGIQYGLRPRFISRLTKDADKFLIDVKATLQLKSPRTFIAPGIAGCMRQLNR-VKGEANKIILLGDGRSTFDSRDPPLDPPSIAQQFLSEPNNAISAVAV--SFPNTAMLEAITGTPDRVFKVDDWFSVLDVITQLVEEVCG 237
            P+ A   ++   S   ++  D SCD ++CFALDGSGSIS +E+Q+Q D V +IA ++A   ++ ++ +QYGL   FIS  T D   F+  V  ++ L++PRTF+  G+  C+ Q+N   K    K+++LGDGR  +          S+A    S  +  I AV +  S     +LE   G  + V+   ++  V  V+  LV  +C 
Sbjct:   55 PVAASLGAKTIDSLQTEVCRDGSCDISLCFALDGSGSISAEEYQVQKDLVKLIA-ILAAPANATFSAVQYGLANEFISVSTSDPFAFMKYVDNSVLLRAPRTFLTAGLGFCISQVNENPKAGGKKVVVLGDGRDNYMES-------SLALVLKSAESVDIFAVGIGNSLDTQKLLEITGGQKNHVYTASNYADVGQVVVDLVRALCS 253          
BLAST of Gcaud8522.t1 vs. uniprot
Match: R7Q3A9_CHOCR (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3A9_CHOCR)

HSP 1 Score: 103 bits (257), Expect = 3.420e-23
Identity = 69/183 (37.70%), Postives = 104/183 (56.83%), Query Frame = 0
Query:   57 CDPNICFALDGSGSISEDEFQLQLDFVNIIAGVVALDEDSQYAGIQYGLRPRFISRLTKDADKFLIDVKATLQLKSPRTFIAPGIAGCMRQLN-RVKGEANKIILLGDGRSTFDSRDPPLDPPSIAQQFLSEPNNA-ISAVAVSFP-NTAMLEAITGTPDRVFKVDDWFSVLDVITQLVEEVC 236
            C+  +CFALDGSGSIS  +F++Q D V ++A V A +  + ++ +QYGL    IS  T +A KF   V  ++  ++PRTFI  G+  C+  L    +G   +I+LLGDGRS F +   PL         LS  N+  ISAV + FP N+  L  ITG+  R+  V+ +  +  ++ +LV  +C
Sbjct:   65 CNMRLCFALDGSGSISPVQFKVQQDLVKLLASV-AREGGATFSAVQYGLSNTAISTPTGNAPKFRRAVDDSIFQRAPRTFIGSGLGFCISNLKTEPRGRGRRILLLGDGRSNFFTLALPL--------VLSTLNDIQISAVGIGFPRNSRTLLDITGSRSRLCAVNRYSDIRRIVFKLVRGLC 238          
BLAST of Gcaud8522.t1 vs. uniprot
Match: A0A2V3IS99_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IS99_9FLOR)

HSP 1 Score: 100 bits (250), Expect = 6.730e-22
Identity = 62/188 (32.98%), Postives = 103/188 (54.79%), Query Frame = 0
Query:   57 CDPNICFALDGSGSISEDEFQLQLDFVNIIAGVVALDEDSQYAGIQYGLRPRFISRLTKDADKFLIDVKATLQLKSPRTFIAPGIAGCMRQLNRVKGEANKIILLGDGRSTF--DSRDPPLDPPSIAQQFLSEPNN--AISAVAVSFPNTAMLEAITG-TPDRVFKVDDWFSV-LDVITQLVEEVCGF 238
            C+  +CFALDGS SI   +F+ Q   ++++A   A+D +S+++ +QYGL    IS  T +   FL  V  + Q+ + RTFI+ G+A C+RQ+ R    +  I++LGDGR+ F  DS D          Q L E ++   +S    +F N  +L+ ++   P+RVF  D +  +    ++ L+  +C F
Sbjct:   74 CNRPLCFALDGSASIPAADFEFQRGLISLLASFAAIDTESEFSAVQYGLATTGISLPTSNITLFLQRVSLSRQVNASRTFISAGLASCLRQVRRGNETSGIIVVLGDGRANFATDSLD----------QVLQEVDDELVVSVGVGTFLNPNLLKKLSRWVPERVFLFDSYSDINAKAVSALLSRICWF 251          
BLAST of Gcaud8522.t1 vs. uniprot
Match: A0A2V3IBU0_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBU0_9FLOR)

HSP 1 Score: 100 bits (250), Expect = 7.640e-22
Identity = 63/205 (30.73%), Postives = 100/205 (48.78%), Query Frame = 0
Query:   42 QAAVSEALQIAEDTSCDPNICFALDGSGSISEDEFQLQLDFVNIIAGVVALDEDSQYAGIQYGLRPRFISRLTKDADKFLIDVKATLQLKSPRTFIAPGIAGCMRQLNRVKGEA------NKIILLGDGRSTFDSRDPPLDPPSIAQQFLSEPNNAISAVAVSFPNTA---MLEAITGTPDRVFKVDDWFSVLDVITQLVEEVCG 237
            Q  +  A +  E   C  ++CFALD SGS+++ +F    DF+  I  ++  D  +++A  QYG R   I+ +T D   F  +V  +      +T +  GI  C  QL R +  A      NK++++GDGR+TFD       P   A  F  +    IS V++ +P      +L  + G    VF VDD+  + + +  LV E+CG
Sbjct:   82 QNTIRTASEAVEARGCLAHVCFALDTSGSVTKQQFSKGRDFILDITAILGNDRRTKFAAGQYGRRTYKIASMTGDVATFNTEVGFSPYRHDSQTSVGSGIVFCHSQLRRARKNAADANIVNKMVVIGDGRNTFD-------PIRRANNFRRKVGGEISTVSIGYPGKEGERILSEVAGETGGVFTVDDYDELSEKVEDLVVEICG 279          
BLAST of Gcaud8522.t1 vs. uniprot
Match: A0A3Q4H007_NEOBR (Uncharacterized protein n=2 Tax=Neolamprologus brichardi TaxID=32507 RepID=A0A3Q4H007_NEOBR)

HSP 1 Score: 58.9 bits (141), Expect = 1.820e-6
Identity = 49/206 (23.79%), Postives = 93/206 (45.15%), Query Frame = 0
Query:   38 DPMSQAAVSEALQIAE-DTSCDPNICFALDGSGSISEDEFQLQLDFVNIIAGVVALDEDSQYAGI-QYGLRPRFISRLTKDADKF-LIDVKATLQLKSPRTFIAPGIAGCMRQLNRVKGEANKI----ILLGDGRSTFDSRDPPLDPPSIAQQFLSEPNNAISAVAVSFPNTAMLEAITGTPDRVFKVDDWFSVLDVITQLVEEVC 236
            D + +     AL+  E D     ++ F LD S SI++D+  + L+F   +     + ++  + G+ Q+   P+    L    DK  +I+    +  K   T++   +       +   G    +    +L+ DG S  D  D        A + L +    I A+AV       L  ITGTP++VF V+++ S+ ++ T++++E+C
Sbjct:  247 DALKELETKLALKFCEKDCKKTTDLVFLLDYSSSINQDQHTIMLNFTASVVDNFNVSKEFAHVGLAQFSADPKHEFYLNTYNDKTKMIEHILNMNYKGGNTYLGEALDHIRDYFHESNGGRRDVPKNLVLITDGNSKDDVED--------AAEALRKMGITIFAIAVGDVYYLQLLQITGTPEKVFNVENFDSLANIKTKIIDEIC 444          
BLAST of Gcaud8522.t1 vs. uniprot
Match: UPI0016436B1C (collagen alpha-6(VI) chain-like n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=UPI0016436B1C)

HSP 1 Score: 57.4 bits (137), Expect = 7.850e-6
Identity = 45/189 (23.81%), Postives = 87/189 (46.03%), Query Frame = 0
Query:   54 DTSCDPNICFALDGSGSISEDEFQLQLDFVNIIAGVVALDEDSQYAGI-QYGLRPRFISRLTKDADKF-LIDVKATLQLKSPRTFIAPGIAGCMRQLNRVKGEANKI----ILLGDGRSTFDSRDPPLDPPSIAQQFLSEPNNAISAVAVSFPNTAMLEAITGTPDRVFKVDDWFSVLDVITQLVEEVC 236
            +T    ++ F LD S SI++D+  + L+F   +     + ++  + G+ Q+   P+    L    DK  +I+    +  K   T++   +       +   G    +    +L+ DG S  D  D        A + L +    I A+AV       L  ITGTP++VF V+++ S+ ++ T++++E+C
Sbjct:  956 ETCNQTDLVFLLDYSSSINQDQHTIMLNFTASVVDNFNVSKEFAHVGLAQFSADPKHEFYLNTYNDKTKMIEHILNMNYKGGNTYLGEALDHIRDYFHESNGGRRDVPKNLVLITDGNSKDDVED--------AAEALRKMGITIFAIAVGDVYYLQLLQITGTPEKVFNVENFDSLANIKTKIIDEIC 1136          
The following BLAST results are available for this feature:
BLAST of Gcaud8522.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2V3ISA4_9FLOR3.190e-10164.96VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IQR5_9FLOR8.040e-8657.79Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis ... [more]
A0A2V3IPP3_9FLOR2.540e-6445.92Collagen alpha-6(VI) chain n=1 Tax=Gracilariopsis ... [more]
A0A2V3ID60_9FLOR7.820e-2836.13Cartilage matrix protein n=1 Tax=Gracilariopsis ch... [more]
R7Q5C2_CHOCR1.540e-2533.33VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
R7Q3A9_CHOCR3.420e-2337.70VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A2V3IS99_9FLOR6.730e-2232.98VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IBU0_9FLOR7.640e-2230.73VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A3Q4H007_NEOBR1.820e-623.79Uncharacterized protein n=2 Tax=Neolamprologus bri... [more]
UPI0016436B1C7.850e-623.81collagen alpha-6(VI) chain-like n=1 Tax=Neolamprol... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 58..233
e-value: 1.7E-11
score: 54.2
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 60..229
e-value: 3.3E-15
score: 56.8
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 60..235
score: 12.119577
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 48..239
e-value: 1.9E-19
score: 72.2
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 33..237
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..243
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..24
NoneNo IPR availableCDDcd00198vWFAcoord: 60..218
e-value: 1.47506E-11
score: 59.1166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_243_length_34547_cov_4.802386contigNODE_243_length_34547_cov_4.802386:19693..20424 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8522.t1Gcaud8522.t1Gracilaria caudata M_176_S67 malemRNANODE_243_length_34547_cov_4.802386 19693..20424 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8522.t1 ID=Gcaud8522.t1|Name=Gcaud8522.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=244bp
MIRILIWLFALFAAAQAVVNVARAQDRINSLNTPLLADPMSQAAVSEALQ
IAEDTSCDPNICFALDGSGSISEDEFQLQLDFVNIIAGVVALDEDSQYAG
IQYGLRPRFISRLTKDADKFLIDVKATLQLKSPRTFIAPGIAGCMRQLNR
VKGEANKIILLGDGRSTFDSRDPPLDPPSIAQQFLSEPNNAISAVAVSFP
NTAMLEAITGTPDRVFKVDDWFSVLDVITQLVEEVCGFDQVEF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf