Gcaud1224.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1224.t1
Unique NameGcaud1224.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length119
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2412_length_5731_cov_4.498050contigNODE_2412_length_5731_cov_4.498050:4120..4476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog344747.PM8797T_30012
Preferred namefolX
PFAMsFolB
Max annot lvl2|Bacteria
KEGG rclassRC00721,RC00943,RC01479,RC03333,RC03334
KEGG koko:K01633,ko:K07589
KEGG ReactionR03504,R11037,R11073,R11082
KEGG Pathwayko00790,ko01100,map00790,map01100
KEGG ModuleM00126,M00840
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0008719,GO:0009987,GO:0016853,GO:0019752,GO:0034641,GO:0042558,GO:0043436,GO:0043603,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0071704,GO:1901360,GO:1901564
Evalue8.4e-29
EggNOG OGsCOG1539@1|root,COG1539@2|Bacteria
EC1.13.11.81,4.1.2.25,5.1.99.7,5.1.99.8
DescriptionCatalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1224Gcaud1224Gracilaria caudata M_176_S67 malegeneNODE_2412_length_5731_cov_4.498050 4120..4476 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1224.t1.stop1Gcaud1224.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2412_length_5731_cov_4.498050 4120..4122 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1224.t1.CDS1Gcaud1224.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2412_length_5731_cov_4.498050 4120..4476 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1224.t1.exon1Gcaud1224.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2412_length_5731_cov_4.498050 4120..4476 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1224.t1.start1Gcaud1224.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2412_length_5731_cov_4.498050 4474..4476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1224.t1Gcaud1224.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2412_length_5731_cov_4.498050 4120..4476 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1224.t1 ID=Gcaud1224.t1|Name=Gcaud1224.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=119bp
MDKVVIKDLLVRAILGIKHWEREKEQDILINITIFTDTTKAAKTDDLADC
VDYSAVTKKVKAHVECAQRRTAEALANDLARICLQEELARKVLVLVEKPG
AVRFSRSVGVEIERHRDE*
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spliced messenger RNA

>Gcaud1224.t1 ID=Gcaud1224.t1|Name=Gcaud1224.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=357bp|location=Sequence derived from alignment at NODE_2412_length_5731_cov_4.498050:4120..4476- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAGGTCGTCATCAAGGACTTGCTTGTTCGTGCCATCCTTGGAAT
AAAACATTGGGAACGTGAGAAGGAGCAGGATATTCTCATCAACATCACCA
TTTTCACCGACACGACAAAAGCAGCGAAGACCGACGACCTTGCCGACTGT
GTTGACTACAGCGCTGTCACAAAGAAAGTGAAGGCCCACGTTGAGTGTGC
ACAGCGCCGAACTGCCGAAGCCTTGGCAAACGATTTGGCTCGCATCTGCC
TTCAGGAAGAGCTGGCTCGAAAAGTTTTGGTCTTAGTTGAGAAACCAGGT
GCTGTTCGATTCTCTAGGTCTGTCGGTGTGGAGATAGAGCGTCATCGAGA
TGAGTGA
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protein sequence of Gcaud1224.t1

>Gcaud1224.t1 ID=Gcaud1224.t1|Name=Gcaud1224.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=119bp
MDKVVIKDLLVRAILGIKHWEREKEQDILINITIFTDTTKAAKTDDLADC
VDYSAVTKKVKAHVECAQRRTAEALANDLARICLQEELARKVLVLVEKPG
AVRFSRSVGVEIERHRDE*
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mRNA from alignment at NODE_2412_length_5731_cov_4.498050:4120..4476-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1224.t1 ID=Gcaud1224.t1|Name=Gcaud1224.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=357bp|location=Sequence derived from alignment at NODE_2412_length_5731_cov_4.498050:4120..4476- (Gracilaria caudata M_176_S67 male)
ATGGACAAGGTCGTCATCAAGGACTTGCTTGTTCGTGCCATCCTTGGAAT
AAAACATTGGGAACGTGAGAAGGAGCAGGATATTCTCATCAACATCACCA
TTTTCACCGACACGACAAAAGCAGCGAAGACCGACGACCTTGCCGACTGT
GTTGACTACAGCGCTGTCACAAAGAAAGTGAAGGCCCACGTTGAGTGTGC
ACAGCGCCGAACTGCCGAAGCCTTGGCAAACGATTTGGCTCGCATCTGCC
TTCAGGAAGAGCTGGCTCGAAAAGTTTTGGTCTTAGTTGAGAAACCAGGT
GCTGTTCGATTCTCTAGGTCTGTCGGTGTGGAGATAGAGCGTCATCGAGA
TGAGTGA
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Coding sequence (CDS) from alignment at NODE_2412_length_5731_cov_4.498050:4120..4476-

>Gcaud1224.t1 ID=Gcaud1224.t1|Name=Gcaud1224.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=357bp|location=Sequence derived from alignment at NODE_2412_length_5731_cov_4.498050:4120..4476- (Gracilaria caudata M_176_S67 male)
ATGGACAAGGTCGTCATCAAGGACTTGCTTGTTCGTGCCATCCTTGGAAT
AAAACATTGGGAACGTGAGAAGGAGCAGGATATTCTCATCAACATCACCA
TTTTCACCGACACGACAAAAGCAGCGAAGACCGACGACCTTGCCGACTGT
GTTGACTACAGCGCTGTCACAAAGAAAGTGAAGGCCCACGTTGAGTGTGC
ACAGCGCCGAACTGCCGAAGCCTTGGCAAACGATTTGGCTCGCATCTGCC
TTCAGGAAGAGCTGGCTCGAAAAGTTTTGGTCTTAGTTGAGAAACCAGGT
GCTGTTCGATTCTCTAGGTCTGTCGGTGTGGAGATAGAGCGTCATCGAGA
TGAGTGA
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