Gcaud7635.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7635.t1
Unique NameGcaud7635.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length247
Homology
BLAST of Gcaud7635.t1 vs. uniprot
Match: A0A2V3IXJ4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXJ4_9FLOR)

HSP 1 Score: 317 bits (813), Expect = 7.590e-107
Identity = 162/242 (66.94%), Postives = 193/242 (79.75%), Query Frame = 0
Query:    1 MEEAKAAMEQVPLLENSSENVQASPQAPSPPLEDDQISSTELSSQTERNDPPTLVDRIMDSIHAAFLYFCHKLGYFFLRFLSFVMLHCGILSAGVFQLLAFYYTGVLNIYVLVACLLYAPALFAISIIREEIVLNGTSRSGAGPRLTHEVAFAYLLLTVFGASSVFQPLFMHADNVISYKSMWISLGGTGIFYYCLLISEVLFASASNVHRARLREEEMERERANQPFWIARYESLHGKGDD 242
            M+EAK+AME+VPL+ NSS N    P       +D+ +S TE SSQ ERN  P+L+DRI+D +HA F   C  LGY FLR LS +MLHCGI+ AGV Q+LAFYYTGVLN +VL+ACLLYAPAL AIS+IREEIVLNGTS SGAGPR+T EVA AYL+L++ G SSV  PLFMHA+N+ISYKSMW S+G T  +YYCLLISEVLFASASNV R+R REEE+ER+RANQPFWI RYE++H K +D
Sbjct:    1 MDEAKSAMERVPLMANSSANDVVMPSTSQHAADDEPLSETEFSSQNERNTNPSLLDRILDRVHAVFSVLCRSLGYLFLRMLSIIMLHCGIIGAGVLQMLAFYYTGVLNSHVLLACLLYAPALCAISVIREEIVLNGTSHSGAGPRITQEVAVAYLILSIAGISSVLHPLFMHAENMISYKSMWTSIGATTFYYYCLLISEVLFASASNVQRSRDREEELERQRANQPFWITRYEAIHSKDND 242          
BLAST of Gcaud7635.t1 vs. uniprot
Match: R7Q5F7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5F7_CHOCR)

HSP 1 Score: 188 bits (477), Expect = 4.190e-56
Identity = 98/207 (47.34%), Postives = 140/207 (67.63%), Query Frame = 0
Query:   27 APSPPLEDDQISSTELSSQTERNDPPTLVDRIMDSIHAAFLYFCHKLGYFFLRFLSFVMLHCGILSAGVFQLLAFYYTGVLNIYVLVACLLYAPALFAISIIREEIVLNGTSRSGAGPRLTHEVAFAYLLLTVFGASSVFQPLFMHADNVISYKSMWISLGGTGIFYYCLLISEVLFASASNVHRARLREEEMERERANQPFWIARY 233
            +P+PPL D   +     S         + DR +  +HA F  FCH LG FFLR LS +ML  G++++ V Q+LA+YYTGVLN +V +ACLL+AP L A+++IR E+  +G SRSGAGPR++  V  AYL++TVF  +S+ QP+ MH +N I  KSMW +LGG  +FYY +L+SEVL+A A N+ RA+ R++E+ R   + PFW++ Y
Sbjct:   27 SPAPPLADHPGAPDSAPSDAG------IFDRFLTRVHAFFSRFCHSLGAFFLRALSTLMLLAGVVASVVVQMLAYYYTGVLNPWVFLACLLFAPTLAAVTVIRAELNFSGPSRSGAGPRMSQYVTLAYLVITVFAVASLMQPVVMHGENKIPGKSMWTALGGVALFYYSMLVSEVLYAVALNIDRAKERDDELLRRDRDDPFWLSSY 227          
The following BLAST results are available for this feature:
BLAST of Gcaud7635.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IXJ4_9FLOR7.590e-10766.94Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q5F7_CHOCR4.190e-5647.34Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..50
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 76..103
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 182..205
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 206..246
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..129
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 104..108
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 130..149
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 150..170
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..75
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 171..181
NoneNo IPR availableTMHMMTMhelixcoord: 149..171
NoneNo IPR availableTMHMMTMhelixcoord: 181..203
NoneNo IPR availableTMHMMTMhelixcoord: 80..102
NoneNo IPR availableTMHMMTMhelixcoord: 106..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_240_length_34680_cov_4.545549contigNODE_240_length_34680_cov_4.545549:1933..2673 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7635.t1Gcaud7635.t1Gracilaria caudata M_176_S67 malemRNANODE_240_length_34680_cov_4.545549 1933..2673 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7635.t1 ID=Gcaud7635.t1|Name=Gcaud7635.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=247bp
MEEAKAAMEQVPLLENSSENVQASPQAPSPPLEDDQISSTELSSQTERND
PPTLVDRIMDSIHAAFLYFCHKLGYFFLRFLSFVMLHCGILSAGVFQLLA
FYYTGVLNIYVLVACLLYAPALFAISIIREEIVLNGTSRSGAGPRLTHEV
AFAYLLLTVFGASSVFQPLFMHADNVISYKSMWISLGGTGIFYYCLLISE
VLFASASNVHRARLREEEMERERANQPFWIARYESLHGKGDDISSV*
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