Gcaud1816.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1816.t1
Unique Name	Gcaud1816.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	309

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_23_length_76035_cov_4.613123	contig	NODE_23_length_76035_cov_4.613123:20240..21166 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr43362
PFAMs	Acetyltransf_13,zf-C2H2_3
Max annot lvl	2836\|Bacillariophyta
KEGG ko	ko:K11268
Evalue	2.83e-16
EggNOG OGs	KOG3014@1\|root,KOG3014@2759\|Eukaryota,2XCG8@2836\|Bacillariophyta
Description	zinc-finger of acetyl-transferase ESCO
COG category	L
BRITE	ko00000,ko01000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1816	Gcaud1816	Gracilaria caudata M_176_S67 male	gene	NODE_23_length_76035_cov_4.613123 20240..21166 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1816.t1.stop1	Gcaud1816.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_23_length_76035_cov_4.613123 20240..20242 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1816.t1.CDS1	Gcaud1816.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 20240..21166 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1816.t1.exon1	Gcaud1816.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 20240..21166 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1816.t1.start1	Gcaud1816.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_23_length_76035_cov_4.613123 21164..21166 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1816.t1	Gcaud1816.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_23_length_76035_cov_4.613123 20240..21166 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_23_length_76035_cov_4.613123:20240..21166-
coding sequence from alignment at NODE_23_length_76035_cov_4.613123:20240..21166-

mRNA sequence

>Gcaud1816.t1 ID=Gcaud1816.t1|Name=Gcaud1816.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=309bp
MPIVYSRKRLRAQNLHPKSTCTDKSDTHIEHSRTPASPPARQKPRKRRRF
QQLYIDAGQSTLSHTLCRHCNLLYVPGTSDEALHRARHSKVSDAFSWPLH
NATVLPETSVTEGVFAAIRKNDCHDASLVRRLRRLDSFVCSQLASNASQG
AMSIDDRLKLSLRRDDQHVWMVLVYVKDGLIRGFVHAERVRLASTASVCD
DGLAEVLRSKENRTFQRTMCGIRKIWVHQNFRKKGIASALTDLARTHLLY
AGIVPRDHVAFTPPTTSGALFARKYLNLANNRILVYQITEDGRPLEEQHS
LPSSSASS*

spliced messenger RNA

>Gcaud1816.t1 ID=Gcaud1816.t1|Name=Gcaud1816.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=927bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:20240..21166- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAATTGTGTACAGCAGGAAGCGTCTCCGCGCCCAAAATCTACATCC
CAAATCCACCTGCACCGACAAGTCCGACACGCACATCGAACACTCGCGCA
CACCAGCCAGTCCACCAGCCCGTCAGAAGCCTCGTAAACGTCGTCGCTTC
CAACAGCTATATATCGATGCTGGACAATCGACGCTCTCACATACTCTTTG
TCGTCACTGCAATCTACTCTATGTCCCTGGAACATCTGATGAAGCACTAC
ATCGCGCCCGTCATTCAAAAGTCAGTGACGCTTTTTCTTGGCCTTTACAC
AACGCAACCGTTCTTCCGGAGACTTCTGTTACCGAAGGGGTCTTTGCAGC
CATTAGAAAGAATGATTGCCACGATGCAAGTCTCGTTAGGCGTCTTCGGC
GATTAGACTCGTTTGTTTGTTCACAATTGGCAAGCAACGCTTCTCAGGGA
GCTATGTCAATTGATGACAGGCTCAAACTATCCTTGCGTCGCGATGATCA
ACATGTTTGGATGGTTCTTGTATATGTGAAAGATGGTTTGATTCGTGGTT
TTGTACATGCGGAAAGAGTGCGATTAGCAAGTACTGCCAGCGTGTGCGAT
GACGGCCTTGCGGAAGTCCTGCGGTCAAAAGAGAACCGTACATTTCAAAG
AACGATGTGCGGAATTAGAAAGATATGGGTTCATCAAAACTTTAGAAAGA
AAGGTATCGCTTCGGCTTTGACAGACCTTGCCAGGACGCACTTGCTGTAT
GCGGGCATTGTGCCAAGAGATCACGTCGCCTTCACACCACCGACAACGTC
TGGAGCCTTGTTTGCGAGAAAGTACCTAAACCTCGCGAACAATCGTATTC
TGGTGTATCAAATAACTGAAGATGGTCGACCCCTTGAGGAACAACACTCA
CTCCCTTCTTCCTCAGCCTCTTCTTAG

protein sequence of Gcaud1816.t1

>Gcaud1816.t1 ID=Gcaud1816.t1|Name=Gcaud1816.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=309bp
MPIVYSRKRLRAQNLHPKSTCTDKSDTHIEHSRTPASPPARQKPRKRRRF
QQLYIDAGQSTLSHTLCRHCNLLYVPGTSDEALHRARHSKVSDAFSWPLH
NATVLPETSVTEGVFAAIRKNDCHDASLVRRLRRLDSFVCSQLASNASQG
AMSIDDRLKLSLRRDDQHVWMVLVYVKDGLIRGFVHAERVRLASTASVCD
DGLAEVLRSKENRTFQRTMCGIRKIWVHQNFRKKGIASALTDLARTHLLY
AGIVPRDHVAFTPPTTSGALFARKYLNLANNRILVYQITEDGRPLEEQHS
LPSSSASS*

mRNA from alignment at NODE_23_length_76035_cov_4.613123:20240..21166-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1816.t1 ID=Gcaud1816.t1|Name=Gcaud1816.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=927bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:20240..21166- (Gracilaria caudata M_176_S67 male)
ATGCCAATTGTGTACAGCAGGAAGCGTCTCCGCGCCCAAAATCTACATCC
CAAATCCACCTGCACCGACAAGTCCGACACGCACATCGAACACTCGCGCA
CACCAGCCAGTCCACCAGCCCGTCAGAAGCCTCGTAAACGTCGTCGCTTC
CAACAGCTATATATCGATGCTGGACAATCGACGCTCTCACATACTCTTTG
TCGTCACTGCAATCTACTCTATGTCCCTGGAACATCTGATGAAGCACTAC
ATCGCGCCCGTCATTCAAAAGTCAGTGACGCTTTTTCTTGGCCTTTACAC
AACGCAACCGTTCTTCCGGAGACTTCTGTTACCGAAGGGGTCTTTGCAGC
CATTAGAAAGAATGATTGCCACGATGCAAGTCTCGTTAGGCGTCTTCGGC
GATTAGACTCGTTTGTTTGTTCACAATTGGCAAGCAACGCTTCTCAGGGA
GCTATGTCAATTGATGACAGGCTCAAACTATCCTTGCGTCGCGATGATCA
ACATGTTTGGATGGTTCTTGTATATGTGAAAGATGGTTTGATTCGTGGTT
TTGTACATGCGGAAAGAGTGCGATTAGCAAGTACTGCCAGCGTGTGCGAT
GACGGCCTTGCGGAAGTCCTGCGGTCAAAAGAGAACCGTACATTTCAAAG
AACGATGTGCGGAATTAGAAAGATATGGGTTCATCAAAACTTTAGAAAGA
AAGGTATCGCTTCGGCTTTGACAGACCTTGCCAGGACGCACTTGCTGTAT
GCGGGCATTGTGCCAAGAGATCACGTCGCCTTCACACCACCGACAACGTC
TGGAGCCTTGTTTGCGAGAAAGTACCTAAACCTCGCGAACAATCGTATTC
TGGTGTATCAAATAACTGAAGATGGTCGACCCCTTGAGGAACAACACTCA
CTCCCTTCTTCCTCAGCCTCTTCTTAG

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:20240..21166-

>Gcaud1816.t1 ID=Gcaud1816.t1|Name=Gcaud1816.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=927bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:20240..21166- (Gracilaria caudata M_176_S67 male)
ATGCCAATTGTGTACAGCAGGAAGCGTCTCCGCGCCCAAAATCTACATCC
CAAATCCACCTGCACCGACAAGTCCGACACGCACATCGAACACTCGCGCA
CACCAGCCAGTCCACCAGCCCGTCAGAAGCCTCGTAAACGTCGTCGCTTC
CAACAGCTATATATCGATGCTGGACAATCGACGCTCTCACATACTCTTTG
TCGTCACTGCAATCTACTCTATGTCCCTGGAACATCTGATGAAGCACTAC
ATCGCGCCCGTCATTCAAAAGTCAGTGACGCTTTTTCTTGGCCTTTACAC
AACGCAACCGTTCTTCCGGAGACTTCTGTTACCGAAGGGGTCTTTGCAGC
CATTAGAAAGAATGATTGCCACGATGCAAGTCTCGTTAGGCGTCTTCGGC
GATTAGACTCGTTTGTTTGTTCACAATTGGCAAGCAACGCTTCTCAGGGA
GCTATGTCAATTGATGACAGGCTCAAACTATCCTTGCGTCGCGATGATCA
ACATGTTTGGATGGTTCTTGTATATGTGAAAGATGGTTTGATTCGTGGTT
TTGTACATGCGGAAAGAGTGCGATTAGCAAGTACTGCCAGCGTGTGCGAT
GACGGCCTTGCGGAAGTCCTGCGGTCAAAAGAGAACCGTACATTTCAAAG
AACGATGTGCGGAATTAGAAAGATATGGGTTCATCAAAACTTTAGAAAGA
AAGGTATCGCTTCGGCTTTGACAGACCTTGCCAGGACGCACTTGCTGTAT
GCGGGCATTGTGCCAAGAGATCACGTCGCCTTCACACCACCGACAACGTC
TGGAGCCTTGTTTGCGAGAAAGTACCTAAACCTCGCGAACAATCGTATTC
TGGTGTATCAAATAACTGAAGATGGTCGACCCCTTGAGGAACAACACTCA
CTCCCTTCTTCCTCAGCCTCTTCTTAG