Gcaud1821.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1821.t1
Unique Name	Gcaud1821.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	720

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_23_length_76035_cov_4.613123	contig	NODE_23_length_76035_cov_4.613123:32740..34899 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMO270CT
PFAMs	DNA_pol_A,DNA_pol_A_exo1
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC02795
KEGG ko	ko:K02335
KEGG Reaction	R00375,R00376,R00377,R00378
KEGG Pathway	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
GOs	GO:0000002,GO:0003674,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009657,GO:0009987,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0032042,GO:0033258,GO:0033259,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576
Evalue	4.02e-26
EggNOG OGs	COG0749@1\|root,KOG0950@2759\|Eukaryota
EC	2.7.7.7
Description	plastid DNA replication
COG category	L
BRITE	ko00000,ko00001,ko01000,ko03032,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1821	Gcaud1821	Gracilaria caudata M_176_S67 male	gene	NODE_23_length_76035_cov_4.613123 32740..34899 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1821.t1.stop1	Gcaud1821.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_23_length_76035_cov_4.613123 32740..32742 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1821.t1.CDS1	Gcaud1821.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 32740..34899 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1821.t1.exon1	Gcaud1821.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 32740..34899 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1821.t1.start1	Gcaud1821.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_23_length_76035_cov_4.613123 34897..34899 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1821.t1	Gcaud1821.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_23_length_76035_cov_4.613123 32740..34899 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_23_length_76035_cov_4.613123:32740..34899-
coding sequence from alignment at NODE_23_length_76035_cov_4.613123:32740..34899-

mRNA sequence

>Gcaud1821.t1 ID=Gcaud1821.t1|Name=Gcaud1821.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=720bp
MLGLRTWTGFRYRFPTFRKAVASSALASPQEKGDTKRPHRQISIIHDVRT
ASRAIEALLRLPEGTPVAWSSQALPPKSSPALVTLCGYAGDPFQNGMWTF
VCPSSRYEEAVWGLMRDYFADKETKVLCFDVQDLTNSLLSRGIQANGCVH
DIKGMARMLGLKERGFDASVKSILSKHTLRKRETMFRGQDRLWEAPSGEL
RLSSEEWVFPACADAHAIFHIYQRLRTNMLKKGAMSAEASNVFEAYEKFY
AQVDKELCTLGKQGLFLSQDLLKDVLMRFEYEGKSEQSLFETWAQNYCDE
VSNVEMTSPMLRHLLFAPYRNIHNISEKIPAEKAFSGRRQVVAEQDGSTT
GKKNRTKKRKVLIRGAGLEPQQHTPNGVPSVSVPALQALITTLSSAEDSE
LQAACSAINGLLNAQTIRQAAQSFEKRLRQVADFDRYIRPRTTIDFERGR
LESLCSDVLEVLRANEDYERLVLDFENLSLCAVADLSGCVSLKKRLWLRD
GVHAYLAKEFSKEISNALYDGSCVLKGEGVTVEKAFPEKFQMAKMLDTCM
GKGARVEVVRNVMKCDQARALQLIDGWFQVHPEVKAWCEQEEGRMRDRKV
AETLRGRQKTLKIGKGKRSAFAVSEGMTFAIEGSAGDFIMQSVLRMVQCE
RINALAWKVVLADGDRIVLHGPRWSTEEAIPAVLDTLASSKDGGPILESA
LHQLRILHGENFRALQRMG*

spliced messenger RNA

>Gcaud1821.t1 ID=Gcaud1821.t1|Name=Gcaud1821.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2160bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:32740..34899- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGGACTCAGAACGTGGACTGGTTTTCGATATCGTTTCCCCACCTT
TCGAAAAGCAGTCGCCTCTAGTGCTTTAGCATCTCCTCAAGAGAAGGGCG
ATACCAAAAGGCCTCATCGACAGATTTCAATCATACATGACGTGCGAACC
GCCTCGCGTGCAATAGAGGCTTTGCTTAGGTTGCCGGAAGGGACACCTGT
AGCATGGAGCTCTCAGGCTCTGCCTCCCAAATCATCACCAGCTTTGGTGA
CCTTGTGCGGGTATGCAGGTGACCCCTTTCAAAATGGAATGTGGACATTC
GTGTGCCCTTCTTCAAGATATGAGGAGGCTGTCTGGGGACTCATGCGGGA
CTACTTTGCAGACAAGGAAACGAAGGTGCTTTGTTTCGATGTACAAGACT
TAACGAACAGCTTGTTAAGCAGAGGTATTCAGGCAAATGGATGCGTTCAT
GACATTAAAGGAATGGCTCGAATGTTAGGACTGAAGGAAAGAGGATTCGA
TGCTTCCGTGAAGAGCATTCTATCTAAGCACACCCTTCGCAAAAGAGAAA
CTATGTTCAGAGGTCAAGATCGACTATGGGAAGCGCCATCTGGTGAGCTG
AGGCTTTCTAGTGAAGAGTGGGTTTTTCCCGCTTGTGCTGATGCACATGC
AATTTTCCATATATACCAAAGATTGAGAACAAATATGCTCAAGAAAGGTG
CGATGTCAGCGGAAGCAAGCAATGTTTTTGAAGCATATGAAAAGTTTTAC
GCTCAGGTCGATAAGGAGTTGTGTACACTTGGAAAGCAAGGGCTTTTTTT
GAGTCAGGATCTGCTTAAGGATGTTCTAATGCGCTTCGAGTATGAGGGTA
AGTCGGAGCAATCACTCTTCGAAACCTGGGCTCAAAACTACTGTGATGAA
GTATCGAACGTGGAAATGACCTCTCCAATGCTACGGCACTTGCTTTTCGC
CCCATATCGGAACATACACAACATATCTGAGAAAATTCCAGCAGAGAAAG
CTTTTTCTGGACGTCGACAAGTGGTTGCAGAACAAGATGGATCCACAACA
GGAAAGAAAAATCGAACAAAGAAAAGAAAGGTATTGATTCGAGGGGCTGG
GTTAGAGCCTCAACAGCACACTCCTAACGGAGTCCCATCAGTAAGCGTTC
CTGCCTTACAGGCTTTGATTACGACTCTAAGCTCAGCAGAAGATTCTGAG
CTACAAGCGGCATGTTCTGCCATCAATGGATTGCTGAATGCTCAAACCAT
AAGACAAGCAGCACAGAGCTTTGAAAAAAGGTTAAGGCAAGTAGCGGATT
TTGATAGGTACATAAGGCCGAGGACAACAATTGATTTTGAGCGAGGTCGA
TTAGAATCTTTATGTTCAGATGTTCTTGAAGTGCTGCGGGCTAACGAGGA
TTACGAGCGGCTTGTCCTTGACTTCGAAAACCTGAGTCTCTGTGCTGTAG
CAGACCTTTCAGGCTGTGTGAGTCTGAAGAAAAGGTTGTGGTTGAGGGAT
GGAGTTCACGCTTACCTTGCAAAAGAGTTTTCGAAAGAAATTTCCAATGC
TCTTTATGATGGGAGTTGTGTTTTGAAAGGAGAAGGCGTGACCGTTGAGA
AAGCATTTCCGGAGAAGTTTCAAATGGCCAAAATGCTTGATACTTGCATG
GGCAAGGGAGCAAGAGTAGAAGTCGTTAGAAATGTCATGAAATGTGATCA
GGCTCGGGCCTTACAGCTTATAGATGGATGGTTCCAAGTCCACCCTGAAG
TCAAAGCATGGTGCGAACAGGAAGAAGGACGGATGCGAGATCGAAAGGTA
GCGGAGACATTACGCGGTCGGCAGAAGACTTTGAAAATCGGGAAAGGGAA
GCGAAGCGCTTTTGCCGTGAGCGAAGGCATGACGTTTGCAATTGAAGGAT
CTGCAGGAGATTTTATTATGCAGAGCGTTCTGAGAATGGTTCAGTGCGAA
AGAATAAATGCTCTTGCGTGGAAAGTGGTGCTTGCAGATGGCGATAGGAT
TGTCCTTCACGGACCCAGGTGGTCAACGGAAGAGGCCATCCCCGCTGTCT
TGGACACGCTGGCTTCGTCCAAAGATGGCGGCCCAATACTAGAAAGCGCT
TTGCATCAGCTCAGGATCCTTCACGGGGAGAATTTCCGAGCCCTGCAGAG
AATGGGATAA

protein sequence of Gcaud1821.t1

>Gcaud1821.t1 ID=Gcaud1821.t1|Name=Gcaud1821.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=720bp
MLGLRTWTGFRYRFPTFRKAVASSALASPQEKGDTKRPHRQISIIHDVRT
ASRAIEALLRLPEGTPVAWSSQALPPKSSPALVTLCGYAGDPFQNGMWTF
VCPSSRYEEAVWGLMRDYFADKETKVLCFDVQDLTNSLLSRGIQANGCVH
DIKGMARMLGLKERGFDASVKSILSKHTLRKRETMFRGQDRLWEAPSGEL
RLSSEEWVFPACADAHAIFHIYQRLRTNMLKKGAMSAEASNVFEAYEKFY
AQVDKELCTLGKQGLFLSQDLLKDVLMRFEYEGKSEQSLFETWAQNYCDE
VSNVEMTSPMLRHLLFAPYRNIHNISEKIPAEKAFSGRRQVVAEQDGSTT
GKKNRTKKRKVLIRGAGLEPQQHTPNGVPSVSVPALQALITTLSSAEDSE
LQAACSAINGLLNAQTIRQAAQSFEKRLRQVADFDRYIRPRTTIDFERGR
LESLCSDVLEVLRANEDYERLVLDFENLSLCAVADLSGCVSLKKRLWLRD
GVHAYLAKEFSKEISNALYDGSCVLKGEGVTVEKAFPEKFQMAKMLDTCM
GKGARVEVVRNVMKCDQARALQLIDGWFQVHPEVKAWCEQEEGRMRDRKV
AETLRGRQKTLKIGKGKRSAFAVSEGMTFAIEGSAGDFIMQSVLRMVQCE
RINALAWKVVLADGDRIVLHGPRWSTEEAIPAVLDTLASSKDGGPILESA
LHQLRILHGENFRALQRMG*

mRNA from alignment at NODE_23_length_76035_cov_4.613123:32740..34899-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1821.t1 ID=Gcaud1821.t1|Name=Gcaud1821.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2160bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:32740..34899- (Gracilaria caudata M_176_S67 male)
ATGTTGGGACTCAGAACGTGGACTGGTTTTCGATATCGTTTCCCCACCTT
TCGAAAAGCAGTCGCCTCTAGTGCTTTAGCATCTCCTCAAGAGAAGGGCG
ATACCAAAAGGCCTCATCGACAGATTTCAATCATACATGACGTGCGAACC
GCCTCGCGTGCAATAGAGGCTTTGCTTAGGTTGCCGGAAGGGACACCTGT
AGCATGGAGCTCTCAGGCTCTGCCTCCCAAATCATCACCAGCTTTGGTGA
CCTTGTGCGGGTATGCAGGTGACCCCTTTCAAAATGGAATGTGGACATTC
GTGTGCCCTTCTTCAAGATATGAGGAGGCTGTCTGGGGACTCATGCGGGA
CTACTTTGCAGACAAGGAAACGAAGGTGCTTTGTTTCGATGTACAAGACT
TAACGAACAGCTTGTTAAGCAGAGGTATTCAGGCAAATGGATGCGTTCAT
GACATTAAAGGAATGGCTCGAATGTTAGGACTGAAGGAAAGAGGATTCGA
TGCTTCCGTGAAGAGCATTCTATCTAAGCACACCCTTCGCAAAAGAGAAA
CTATGTTCAGAGGTCAAGATCGACTATGGGAAGCGCCATCTGGTGAGCTG
AGGCTTTCTAGTGAAGAGTGGGTTTTTCCCGCTTGTGCTGATGCACATGC
AATTTTCCATATATACCAAAGATTGAGAACAAATATGCTCAAGAAAGGTG
CGATGTCAGCGGAAGCAAGCAATGTTTTTGAAGCATATGAAAAGTTTTAC
GCTCAGGTCGATAAGGAGTTGTGTACACTTGGAAAGCAAGGGCTTTTTTT
GAGTCAGGATCTGCTTAAGGATGTTCTAATGCGCTTCGAGTATGAGGGTA
AGTCGGAGCAATCACTCTTCGAAACCTGGGCTCAAAACTACTGTGATGAA
GTATCGAACGTGGAAATGACCTCTCCAATGCTACGGCACTTGCTTTTCGC
CCCATATCGGAACATACACAACATATCTGAGAAAATTCCAGCAGAGAAAG
CTTTTTCTGGACGTCGACAAGTGGTTGCAGAACAAGATGGATCCACAACA
GGAAAGAAAAATCGAACAAAGAAAAGAAAGGTATTGATTCGAGGGGCTGG
GTTAGAGCCTCAACAGCACACTCCTAACGGAGTCCCATCAGTAAGCGTTC
CTGCCTTACAGGCTTTGATTACGACTCTAAGCTCAGCAGAAGATTCTGAG
CTACAAGCGGCATGTTCTGCCATCAATGGATTGCTGAATGCTCAAACCAT
AAGACAAGCAGCACAGAGCTTTGAAAAAAGGTTAAGGCAAGTAGCGGATT
TTGATAGGTACATAAGGCCGAGGACAACAATTGATTTTGAGCGAGGTCGA
TTAGAATCTTTATGTTCAGATGTTCTTGAAGTGCTGCGGGCTAACGAGGA
TTACGAGCGGCTTGTCCTTGACTTCGAAAACCTGAGTCTCTGTGCTGTAG
CAGACCTTTCAGGCTGTGTGAGTCTGAAGAAAAGGTTGTGGTTGAGGGAT
GGAGTTCACGCTTACCTTGCAAAAGAGTTTTCGAAAGAAATTTCCAATGC
TCTTTATGATGGGAGTTGTGTTTTGAAAGGAGAAGGCGTGACCGTTGAGA
AAGCATTTCCGGAGAAGTTTCAAATGGCCAAAATGCTTGATACTTGCATG
GGCAAGGGAGCAAGAGTAGAAGTCGTTAGAAATGTCATGAAATGTGATCA
GGCTCGGGCCTTACAGCTTATAGATGGATGGTTCCAAGTCCACCCTGAAG
TCAAAGCATGGTGCGAACAGGAAGAAGGACGGATGCGAGATCGAAAGGTA
GCGGAGACATTACGCGGTCGGCAGAAGACTTTGAAAATCGGGAAAGGGAA
GCGAAGCGCTTTTGCCGTGAGCGAAGGCATGACGTTTGCAATTGAAGGAT
CTGCAGGAGATTTTATTATGCAGAGCGTTCTGAGAATGGTTCAGTGCGAA
AGAATAAATGCTCTTGCGTGGAAAGTGGTGCTTGCAGATGGCGATAGGAT
TGTCCTTCACGGACCCAGGTGGTCAACGGAAGAGGCCATCCCCGCTGTCT
TGGACACGCTGGCTTCGTCCAAAGATGGCGGCCCAATACTAGAAAGCGCT
TTGCATCAGCTCAGGATCCTTCACGGGGAGAATTTCCGAGCCCTGCAGAG
AATGGGATAA

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:32740..34899-

>Gcaud1821.t1 ID=Gcaud1821.t1|Name=Gcaud1821.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2160bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:32740..34899- (Gracilaria caudata M_176_S67 male)
ATGTTGGGACTCAGAACGTGGACTGGTTTTCGATATCGTTTCCCCACCTT
TCGAAAAGCAGTCGCCTCTAGTGCTTTAGCATCTCCTCAAGAGAAGGGCG
ATACCAAAAGGCCTCATCGACAGATTTCAATCATACATGACGTGCGAACC
GCCTCGCGTGCAATAGAGGCTTTGCTTAGGTTGCCGGAAGGGACACCTGT
AGCATGGAGCTCTCAGGCTCTGCCTCCCAAATCATCACCAGCTTTGGTGA
CCTTGTGCGGGTATGCAGGTGACCCCTTTCAAAATGGAATGTGGACATTC
GTGTGCCCTTCTTCAAGATATGAGGAGGCTGTCTGGGGACTCATGCGGGA
CTACTTTGCAGACAAGGAAACGAAGGTGCTTTGTTTCGATGTACAAGACT
TAACGAACAGCTTGTTAAGCAGAGGTATTCAGGCAAATGGATGCGTTCAT
GACATTAAAGGAATGGCTCGAATGTTAGGACTGAAGGAAAGAGGATTCGA
TGCTTCCGTGAAGAGCATTCTATCTAAGCACACCCTTCGCAAAAGAGAAA
CTATGTTCAGAGGTCAAGATCGACTATGGGAAGCGCCATCTGGTGAGCTG
AGGCTTTCTAGTGAAGAGTGGGTTTTTCCCGCTTGTGCTGATGCACATGC
AATTTTCCATATATACCAAAGATTGAGAACAAATATGCTCAAGAAAGGTG
CGATGTCAGCGGAAGCAAGCAATGTTTTTGAAGCATATGAAAAGTTTTAC
GCTCAGGTCGATAAGGAGTTGTGTACACTTGGAAAGCAAGGGCTTTTTTT
GAGTCAGGATCTGCTTAAGGATGTTCTAATGCGCTTCGAGTATGAGGGTA
AGTCGGAGCAATCACTCTTCGAAACCTGGGCTCAAAACTACTGTGATGAA
GTATCGAACGTGGAAATGACCTCTCCAATGCTACGGCACTTGCTTTTCGC
CCCATATCGGAACATACACAACATATCTGAGAAAATTCCAGCAGAGAAAG
CTTTTTCTGGACGTCGACAAGTGGTTGCAGAACAAGATGGATCCACAACA
GGAAAGAAAAATCGAACAAAGAAAAGAAAGGTATTGATTCGAGGGGCTGG
GTTAGAGCCTCAACAGCACACTCCTAACGGAGTCCCATCAGTAAGCGTTC
CTGCCTTACAGGCTTTGATTACGACTCTAAGCTCAGCAGAAGATTCTGAG
CTACAAGCGGCATGTTCTGCCATCAATGGATTGCTGAATGCTCAAACCAT
AAGACAAGCAGCACAGAGCTTTGAAAAAAGGTTAAGGCAAGTAGCGGATT
TTGATAGGTACATAAGGCCGAGGACAACAATTGATTTTGAGCGAGGTCGA
TTAGAATCTTTATGTTCAGATGTTCTTGAAGTGCTGCGGGCTAACGAGGA
TTACGAGCGGCTTGTCCTTGACTTCGAAAACCTGAGTCTCTGTGCTGTAG
CAGACCTTTCAGGCTGTGTGAGTCTGAAGAAAAGGTTGTGGTTGAGGGAT
GGAGTTCACGCTTACCTTGCAAAAGAGTTTTCGAAAGAAATTTCCAATGC
TCTTTATGATGGGAGTTGTGTTTTGAAAGGAGAAGGCGTGACCGTTGAGA
AAGCATTTCCGGAGAAGTTTCAAATGGCCAAAATGCTTGATACTTGCATG
GGCAAGGGAGCAAGAGTAGAAGTCGTTAGAAATGTCATGAAATGTGATCA
GGCTCGGGCCTTACAGCTTATAGATGGATGGTTCCAAGTCCACCCTGAAG
TCAAAGCATGGTGCGAACAGGAAGAAGGACGGATGCGAGATCGAAAGGTA
GCGGAGACATTACGCGGTCGGCAGAAGACTTTGAAAATCGGGAAAGGGAA
GCGAAGCGCTTTTGCCGTGAGCGAAGGCATGACGTTTGCAATTGAAGGAT
CTGCAGGAGATTTTATTATGCAGAGCGTTCTGAGAATGGTTCAGTGCGAA
AGAATAAATGCTCTTGCGTGGAAAGTGGTGCTTGCAGATGGCGATAGGAT
TGTCCTTCACGGACCCAGGTGGTCAACGGAAGAGGCCATCCCCGCTGTCT
TGGACACGCTGGCTTCGTCCAAAGATGGCGGCCCAATACTAGAAAGCGCT
TTGCATCAGCTCAGGATCCTTCACGGGGAGAATTTCCGAGCCCTGCAGAG
AATGGGATAA