Gcaud1817.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1817.t1
Unique Name	Gcaud1817.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	393

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_23_length_76035_cov_4.613123	contig	NODE_23_length_76035_cov_4.613123:23102..24280 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1449343.JQLQ01000002_gene813
Preferred name	pgl
PFAMs	Lactonase
Max annot lvl	91061\|Bacilli
KEGG rclass	RC00537
KEGG ko	ko:K07404
KEGG Reaction	R02035
KEGG Pathway	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200
KEGG Module	M00004,M00006,M00008
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016787,GO:0016788,GO:0017057,GO:0044424,GO:0044444,GO:0044464,GO:0052689
Evalue	1.16e-20
EggNOG OGs	COG2706@1\|root,COG2706@2\|Bacteria,1TQ3J@1239\|Firmicutes,4HBHB@91061\|Bacilli,27FGN@186828\|Carnobacteriaceae
EC	3.1.1.31
Description	Lactonase, 7-bladed beta-propeller
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1817	Gcaud1817	Gracilaria caudata M_176_S67 male	gene	NODE_23_length_76035_cov_4.613123 23102..24280 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1817.t1.start1	Gcaud1817.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_23_length_76035_cov_4.613123 23102..23104 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1817.t1.CDS1	Gcaud1817.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 23102..24280 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1817.t1.exon1	Gcaud1817.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 23102..24280 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1817.t1.stop1	Gcaud1817.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_23_length_76035_cov_4.613123 24278..24280 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1817.t1	Gcaud1817.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_23_length_76035_cov_4.613123 23102..24280 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_23_length_76035_cov_4.613123:23102..24280+
coding sequence from alignment at NODE_23_length_76035_cov_4.613123:23102..24280+

mRNA sequence

>Gcaud1817.t1 ID=Gcaud1817.t1|Name=Gcaud1817.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=393bp
MTLSPALALMCYFYAHLAACSQECPNTFSLAIGSYTNHAWFTESKGEGVY
LVDYKNNSVAVSQVLNTTITGDNPTYIAIWKPYMFIGNSIYEGGSVTRVY
MSEDRKTFFSRNASASGLFTDHVSVISSRVAMGANFLSSFDSYISEHGVL
KLSDSFKVPLELASEVVENRTLGPMFGQPHPHMVLPYKDGVVVPDAGSDI
VWHFKVNATDGKLTMLKRIKMSLQDAPRHAAKHPTTDTVYVVGEVSATVS
VLKPEGCGDGLSVCGRVAVFDEKPEDVSLAAIRVTNDGRFLYVSVRYPGT
TNGYIAGYRLNASTGDIQTKIGMWDAFGVHPRDFYVIERAGFEGRCISFV
AVVHRDTDNLVLIERDRGSGMLMDRPALELNVSSPTSVIPIW*

spliced messenger RNA

>Gcaud1817.t1 ID=Gcaud1817.t1|Name=Gcaud1817.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1179bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:23102..24280+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACTCTCACCGGCGCTTGCACTTATGTGCTACTTCTACGCTCATTT
GGCTGCATGCAGTCAAGAGTGTCCCAATACCTTCTCACTTGCAATTGGAA
GCTACACAAATCATGCATGGTTTACCGAATCCAAAGGAGAAGGTGTTTAC
CTCGTCGACTACAAGAACAACTCAGTGGCGGTCTCCCAAGTGCTTAACAC
CACCATAACAGGTGATAATCCTACCTATATTGCGATTTGGAAGCCTTATA
TGTTCATTGGTAATTCAATTTACGAAGGAGGTTCTGTAACGCGTGTCTAC
ATGTCTGAAGACCGCAAGACATTCTTCTCAAGGAACGCTTCCGCTTCTGG
TCTCTTTACCGATCATGTTTCGGTGATTTCATCGAGAGTGGCGATGGGTG
CCAACTTTCTGAGCTCCTTTGACTCTTACATCAGCGAACATGGTGTACTC
AAGCTAAGCGATTCGTTCAAAGTACCGCTGGAACTGGCTTCCGAAGTTGT
CGAAAACCGCACTCTGGGACCCATGTTCGGTCAACCTCATCCCCATATGG
TTCTTCCCTACAAGGACGGTGTCGTTGTACCTGATGCTGGCTCGGATATC
GTTTGGCACTTCAAGGTGAACGCTACTGATGGCAAACTCACTATGCTTAA
ACGTATCAAGATGAGCCTCCAGGATGCTCCACGTCATGCAGCGAAGCATC
CCACAACGGATACAGTTTATGTCGTCGGAGAAGTCTCTGCCACGGTATCG
GTGTTGAAGCCAGAAGGGTGTGGTGACGGACTCTCCGTATGCGGTAGAGT
TGCTGTGTTCGACGAAAAGCCTGAAGATGTGTCACTCGCGGCTATTAGAG
TTACGAATGACGGACGATTCTTATATGTTTCCGTGAGGTACCCTGGAACG
ACGAACGGGTATATTGCTGGTTATAGACTGAATGCCAGCACGGGTGATAT
ACAAACAAAGATTGGGATGTGGGATGCTTTCGGTGTGCACCCAAGAGACT
TTTATGTTATTGAACGAGCAGGGTTTGAGGGTCGTTGTATAAGCTTTGTT
GCTGTGGTTCATCGTGATACGGATAATCTTGTCCTCATCGAACGTGACCG
AGGTTCTGGTATGCTCATGGACCGCCCTGCGTTGGAGTTGAATGTGTCTT
CTCCGACGTCTGTGATTCCGATTTGGTGA

protein sequence of Gcaud1817.t1

>Gcaud1817.t1 ID=Gcaud1817.t1|Name=Gcaud1817.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=393bp
MTLSPALALMCYFYAHLAACSQECPNTFSLAIGSYTNHAWFTESKGEGVY
LVDYKNNSVAVSQVLNTTITGDNPTYIAIWKPYMFIGNSIYEGGSVTRVY
MSEDRKTFFSRNASASGLFTDHVSVISSRVAMGANFLSSFDSYISEHGVL
KLSDSFKVPLELASEVVENRTLGPMFGQPHPHMVLPYKDGVVVPDAGSDI
VWHFKVNATDGKLTMLKRIKMSLQDAPRHAAKHPTTDTVYVVGEVSATVS
VLKPEGCGDGLSVCGRVAVFDEKPEDVSLAAIRVTNDGRFLYVSVRYPGT
TNGYIAGYRLNASTGDIQTKIGMWDAFGVHPRDFYVIERAGFEGRCISFV
AVVHRDTDNLVLIERDRGSGMLMDRPALELNVSSPTSVIPIW*

mRNA from alignment at NODE_23_length_76035_cov_4.613123:23102..24280+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1817.t1 ID=Gcaud1817.t1|Name=Gcaud1817.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1179bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:23102..24280+ (Gracilaria caudata M_176_S67 male)
ATGACACTCTCACCGGCGCTTGCACTTATGTGCTACTTCTACGCTCATTT
GGCTGCATGCAGTCAAGAGTGTCCCAATACCTTCTCACTTGCAATTGGAA
GCTACACAAATCATGCATGGTTTACCGAATCCAAAGGAGAAGGTGTTTAC
CTCGTCGACTACAAGAACAACTCAGTGGCGGTCTCCCAAGTGCTTAACAC
CACCATAACAGGTGATAATCCTACCTATATTGCGATTTGGAAGCCTTATA
TGTTCATTGGTAATTCAATTTACGAAGGAGGTTCTGTAACGCGTGTCTAC
ATGTCTGAAGACCGCAAGACATTCTTCTCAAGGAACGCTTCCGCTTCTGG
TCTCTTTACCGATCATGTTTCGGTGATTTCATCGAGAGTGGCGATGGGTG
CCAACTTTCTGAGCTCCTTTGACTCTTACATCAGCGAACATGGTGTACTC
AAGCTAAGCGATTCGTTCAAAGTACCGCTGGAACTGGCTTCCGAAGTTGT
CGAAAACCGCACTCTGGGACCCATGTTCGGTCAACCTCATCCCCATATGG
TTCTTCCCTACAAGGACGGTGTCGTTGTACCTGATGCTGGCTCGGATATC
GTTTGGCACTTCAAGGTGAACGCTACTGATGGCAAACTCACTATGCTTAA
ACGTATCAAGATGAGCCTCCAGGATGCTCCACGTCATGCAGCGAAGCATC
CCACAACGGATACAGTTTATGTCGTCGGAGAAGTCTCTGCCACGGTATCG
GTGTTGAAGCCAGAAGGGTGTGGTGACGGACTCTCCGTATGCGGTAGAGT
TGCTGTGTTCGACGAAAAGCCTGAAGATGTGTCACTCGCGGCTATTAGAG
TTACGAATGACGGACGATTCTTATATGTTTCCGTGAGGTACCCTGGAACG
ACGAACGGGTATATTGCTGGTTATAGACTGAATGCCAGCACGGGTGATAT
ACAAACAAAGATTGGGATGTGGGATGCTTTCGGTGTGCACCCAAGAGACT
TTTATGTTATTGAACGAGCAGGGTTTGAGGGTCGTTGTATAAGCTTTGTT
GCTGTGGTTCATCGTGATACGGATAATCTTGTCCTCATCGAACGTGACCG
AGGTTCTGGTATGCTCATGGACCGCCCTGCGTTGGAGTTGAATGTGTCTT
CTCCGACGTCTGTGATTCCGATTTGGTGA

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:23102..24280+

>Gcaud1817.t1 ID=Gcaud1817.t1|Name=Gcaud1817.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1179bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:23102..24280+ (Gracilaria caudata M_176_S67 male)
ATGACACTCTCACCGGCGCTTGCACTTATGTGCTACTTCTACGCTCATTT
GGCTGCATGCAGTCAAGAGTGTCCCAATACCTTCTCACTTGCAATTGGAA
GCTACACAAATCATGCATGGTTTACCGAATCCAAAGGAGAAGGTGTTTAC
CTCGTCGACTACAAGAACAACTCAGTGGCGGTCTCCCAAGTGCTTAACAC
CACCATAACAGGTGATAATCCTACCTATATTGCGATTTGGAAGCCTTATA
TGTTCATTGGTAATTCAATTTACGAAGGAGGTTCTGTAACGCGTGTCTAC
ATGTCTGAAGACCGCAAGACATTCTTCTCAAGGAACGCTTCCGCTTCTGG
TCTCTTTACCGATCATGTTTCGGTGATTTCATCGAGAGTGGCGATGGGTG
CCAACTTTCTGAGCTCCTTTGACTCTTACATCAGCGAACATGGTGTACTC
AAGCTAAGCGATTCGTTCAAAGTACCGCTGGAACTGGCTTCCGAAGTTGT
CGAAAACCGCACTCTGGGACCCATGTTCGGTCAACCTCATCCCCATATGG
TTCTTCCCTACAAGGACGGTGTCGTTGTACCTGATGCTGGCTCGGATATC
GTTTGGCACTTCAAGGTGAACGCTACTGATGGCAAACTCACTATGCTTAA
ACGTATCAAGATGAGCCTCCAGGATGCTCCACGTCATGCAGCGAAGCATC
CCACAACGGATACAGTTTATGTCGTCGGAGAAGTCTCTGCCACGGTATCG
GTGTTGAAGCCAGAAGGGTGTGGTGACGGACTCTCCGTATGCGGTAGAGT
TGCTGTGTTCGACGAAAAGCCTGAAGATGTGTCACTCGCGGCTATTAGAG
TTACGAATGACGGACGATTCTTATATGTTTCCGTGAGGTACCCTGGAACG
ACGAACGGGTATATTGCTGGTTATAGACTGAATGCCAGCACGGGTGATAT
ACAAACAAAGATTGGGATGTGGGATGCTTTCGGTGTGCACCCAAGAGACT
TTTATGTTATTGAACGAGCAGGGTTTGAGGGTCGTTGTATAAGCTTTGTT
GCTGTGGTTCATCGTGATACGGATAATCTTGTCCTCATCGAACGTGACCG
AGGTTCTGGTATGCTCATGGACCGCCCTGCGTTGGAGTTGAATGTGTCTT
CTCCGACGTCTGTGATTCCGATTTGGTGA