Gcaud1814.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1814.t1
Unique NameGcaud1814.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length208
Homology
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BLAST of Gcaud1814.t1 vs. uniprot
Match: A0A2V3IJR3_9FLOR (U1-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJR3_9FLOR)

HSP 1 Score: 175 bits (444), Expect = 6.190e-52
Identity = 109/224 (48.66%), Postives = 149/224 (66.52%), Query Frame = 0 
Query:    1 MSPKTKKLRREQTQHLCKICNIWIADNKAQRDQHETGAKHVANRQRVLREIANRNEKERAQARREGRRVVGENGSLAVQQMMEIAMQATQGQIKEATAEAEAEHVEDGEHETVEPGQEVDENGYPLPANTVFQWTTVAEEDMNASQNQEGEQITEGFAKA-------------QGSGVKRTHESKEVVAT----PVEDAEERSAALATFKKRKVASGRKKRRRQ 207
            M+PK K+ R+E TQHLC+ICNIWIADNK QRDQHE+GAKH+ANRQ++LR+IA +NEK RA+AR+EGR   G  GS AVQ++MEIA+QATQG+I       E E  +  + +  +  Q+VDE GYP  AN++F+W  VA+E+   +  QE      G  +              Q +GVKRT   + VV++      EDA+ER+ AL++FKKR  A+GRK+RR++
Sbjct:    1 MAPKAKQRRQETTQHLCRICNIWIADNKLQRDQHESGAKHIANRQKLLRQIAEKNEKARAEARKEGRSTEG--GSRAVQELMEIALQATQGKI------LEPEKTDIDKSDVEQSDQQVDEKGYPTAANSLFEWIAVADENDGDTNGQEXXXXXXGRLEQSAQEAELHHVITQQVAGVKRTLGREPVVSSVKEEDKEDAQERTDALSSFKKRPPAAGRKRRRKR 216
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BLAST of Gcaud1814.t1 vs. uniprot
Match: R7QPY9_CHOCR (zf-U1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPY9_CHOCR)

HSP 1 Score: 70.9 bits (172), Expect = 2.210e-11
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 0 
Query:   16 LCKICNIWIADNKAQRDQHETGAKHVANRQRVLREIANRNEKERAQARREGRRVVGE--------NGSLAVQQMMEIAMQATQGQIKEATAEAEAEHVEDGEH----------ETVEPGQ----EVDENGYPLPANTVF-QWTTVAEEDMN 143
            LCKICNIWIADNK QR QHE  +KH   R  +L+ IA++NE++  + +R+     G+        N +   QQ++E    A+    + A +E   +   D  H           + E GQ     +DENG+PLPA+ ++ QW + AE ++N
Sbjct:   11 LCKICNIWIADNKIQRLQHEEASKHKQARAALLKSIADKNERKAKEQKRDAALAAGKTAPATGGTNAATVTQQLLEKVASASS---RRAASEKSRKRPRDDSHGASSDIKTDARSQENGQLQDEALDENGFPLPASAMYGQWQS-AEVEIN 157
The following BLAST results are available for this feature:
BLAST of Gcaud1814.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IJR3_9FLOR6.190e-5248.66U1-type domain-containing protein n=1 Tax=Gracilar... [more]
R7QPY9_CHOCR2.210e-1135.10zf-U1 domain-containing protein n=1 Tax=Chondrus c... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 12..47
e-value: 2.7E-6
score: 36.9
IPR013085U1-C, C2H2-type zinc fingerPFAMPF06220zf-U1coord: 14..47
e-value: 3.4E-6
score: 26.7
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 12..65
e-value: 8.6E-7
score: 30.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..154
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..179
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 14..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_23_length_76035_cov_4.613123contigNODE_23_length_76035_cov_4.613123:16304..16927 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1814.t1Gcaud1814.t1Gracilaria caudata M_176_S67 malemRNANODE_23_length_76035_cov_4.613123 16304..16927 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1814.t1 ID=Gcaud1814.t1|Name=Gcaud1814.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=208bp
MSPKTKKLRREQTQHLCKICNIWIADNKAQRDQHETGAKHVANRQRVLRE
IANRNEKERAQARREGRRVVGENGSLAVQQMMEIAMQATQGQIKEATAEA
EAEHVEDGEHETVEPGQEVDENGYPLPANTVFQWTTVAEEDMNASQNQEG
EQITEGFAKAQGSGVKRTHESKEVVATPVEDAEERSAALATFKKRKVASG
RKKRRRQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR013085U1-CZ_Znf_C2H2
IPR036236Znf_C2H2_sf