Gcaud1814.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1814.t1
Unique NameGcaud1814.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length208
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_23_length_76035_cov_4.613123contigNODE_23_length_76035_cov_4.613123:16304..16927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5217.XP_007006461.1
PFAMszf-U1
Max annot lvl4751|Fungi
KEGG rclassRC00001
KEGG koko:K00354,ko:K13220
KEGG ReactionR00282
GOsGO:0000375,GO:0000377,GO:0000398,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0045292,GO:0046483,GO:0071704,GO:0090304,GO:1901360
Evalue1.22e-05
EggNOG OGsKOG0150@1|root,KOG0150@2759|Eukaryota,38EER@33154|Opisthokonta,3P2UA@4751|Fungi,3V21J@5204|Basidiomycota,3VFIC@5234|Tremellales
EC1.6.99.1
DescriptionU1 zinc finger
COG categoryK
BRITEko00000,ko01000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1814Gcaud1814Gracilaria caudata M_176_S67 malegeneNODE_23_length_76035_cov_4.613123 16304..16927 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1814.t1.start1Gcaud1814.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_23_length_76035_cov_4.613123 16304..16306 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1814.t1.CDS1Gcaud1814.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_23_length_76035_cov_4.613123 16304..16927 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1814.t1.exon1Gcaud1814.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_23_length_76035_cov_4.613123 16304..16927 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1814.t1.stop1Gcaud1814.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_23_length_76035_cov_4.613123 16925..16927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1814.t1Gcaud1814.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_23_length_76035_cov_4.613123 16304..16927 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1814.t1 ID=Gcaud1814.t1|Name=Gcaud1814.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=208bp
MSPKTKKLRREQTQHLCKICNIWIADNKAQRDQHETGAKHVANRQRVLRE
IANRNEKERAQARREGRRVVGENGSLAVQQMMEIAMQATQGQIKEATAEA
EAEHVEDGEHETVEPGQEVDENGYPLPANTVFQWTTVAEEDMNASQNQEG
EQITEGFAKAQGSGVKRTHESKEVVATPVEDAEERSAALATFKKRKVASG
RKKRRRQ*
back to top

spliced messenger RNA

>Gcaud1814.t1 ID=Gcaud1814.t1|Name=Gcaud1814.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=624bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:16304..16927+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACCAAAAACAAAAAAGCTTCGGCGCGAACAAACTCAGCATCTGTG
CAAAATCTGCAACATATGGATAGCAGACAACAAAGCCCAAAGAGATCAAC
ACGAAACAGGAGCAAAGCACGTAGCAAACCGCCAAAGAGTGTTGCGGGAG
ATAGCAAATCGAAACGAAAAAGAACGAGCTCAGGCAAGGAGAGAAGGAAG
ACGCGTAGTGGGTGAAAATGGGAGTCTAGCCGTGCAACAAATGATGGAGA
TTGCAATGCAAGCAACGCAAGGGCAGATTAAAGAAGCAACAGCAGAAGCA
GAAGCAGAACACGTAGAGGATGGTGAACACGAGACGGTGGAACCTGGGCA
AGAAGTGGACGAAAATGGTTATCCTTTGCCTGCTAATACCGTTTTTCAGT
GGACTACAGTTGCTGAGGAGGATATGAACGCTTCACAAAACCAAGAAGGA
GAACAAATAACGGAGGGTTTTGCAAAGGCACAAGGGTCTGGAGTGAAACG
AACACACGAAAGCAAGGAGGTAGTAGCAACACCCGTGGAAGACGCTGAAG
AGCGTTCCGCAGCGCTTGCAACCTTCAAGAAAAGAAAAGTCGCATCAGGG
CGGAAGAAGCGAAGAAGGCAGTGA
back to top

protein sequence of Gcaud1814.t1

>Gcaud1814.t1 ID=Gcaud1814.t1|Name=Gcaud1814.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=208bp
MSPKTKKLRREQTQHLCKICNIWIADNKAQRDQHETGAKHVANRQRVLRE
IANRNEKERAQARREGRRVVGENGSLAVQQMMEIAMQATQGQIKEATAEA
EAEHVEDGEHETVEPGQEVDENGYPLPANTVFQWTTVAEEDMNASQNQEG
EQITEGFAKAQGSGVKRTHESKEVVATPVEDAEERSAALATFKKRKVASG
RKKRRRQ*
back to top

mRNA from alignment at NODE_23_length_76035_cov_4.613123:16304..16927+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1814.t1 ID=Gcaud1814.t1|Name=Gcaud1814.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=624bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:16304..16927+ (Gracilaria caudata M_176_S67 male)
ATGTCACCAAAAACAAAAAAGCTTCGGCGCGAACAAACTCAGCATCTGTG
CAAAATCTGCAACATATGGATAGCAGACAACAAAGCCCAAAGAGATCAAC
ACGAAACAGGAGCAAAGCACGTAGCAAACCGCCAAAGAGTGTTGCGGGAG
ATAGCAAATCGAAACGAAAAAGAACGAGCTCAGGCAAGGAGAGAAGGAAG
ACGCGTAGTGGGTGAAAATGGGAGTCTAGCCGTGCAACAAATGATGGAGA
TTGCAATGCAAGCAACGCAAGGGCAGATTAAAGAAGCAACAGCAGAAGCA
GAAGCAGAACACGTAGAGGATGGTGAACACGAGACGGTGGAACCTGGGCA
AGAAGTGGACGAAAATGGTTATCCTTTGCCTGCTAATACCGTTTTTCAGT
GGACTACAGTTGCTGAGGAGGATATGAACGCTTCACAAAACCAAGAAGGA
GAACAAATAACGGAGGGTTTTGCAAAGGCACAAGGGTCTGGAGTGAAACG
AACACACGAAAGCAAGGAGGTAGTAGCAACACCCGTGGAAGACGCTGAAG
AGCGTTCCGCAGCGCTTGCAACCTTCAAGAAAAGAAAAGTCGCATCAGGG
CGGAAGAAGCGAAGAAGGCAGTGA
back to top

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:16304..16927+

>Gcaud1814.t1 ID=Gcaud1814.t1|Name=Gcaud1814.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=624bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:16304..16927+ (Gracilaria caudata M_176_S67 male)
ATGTCACCAAAAACAAAAAAGCTTCGGCGCGAACAAACTCAGCATCTGTG
CAAAATCTGCAACATATGGATAGCAGACAACAAAGCCCAAAGAGATCAAC
ACGAAACAGGAGCAAAGCACGTAGCAAACCGCCAAAGAGTGTTGCGGGAG
ATAGCAAATCGAAACGAAAAAGAACGAGCTCAGGCAAGGAGAGAAGGAAG
ACGCGTAGTGGGTGAAAATGGGAGTCTAGCCGTGCAACAAATGATGGAGA
TTGCAATGCAAGCAACGCAAGGGCAGATTAAAGAAGCAACAGCAGAAGCA
GAAGCAGAACACGTAGAGGATGGTGAACACGAGACGGTGGAACCTGGGCA
AGAAGTGGACGAAAATGGTTATCCTTTGCCTGCTAATACCGTTTTTCAGT
GGACTACAGTTGCTGAGGAGGATATGAACGCTTCACAAAACCAAGAAGGA
GAACAAATAACGGAGGGTTTTGCAAAGGCACAAGGGTCTGGAGTGAAACG
AACACACGAAAGCAAGGAGGTAGTAGCAACACCCGTGGAAGACGCTGAAG
AGCGTTCCGCAGCGCTTGCAACCTTCAAGAAAAGAAAAGTCGCATCAGGG
CGGAAGAAGCGAAGAAGGCAGTGA
back to top