Gcaud1814.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1814.t1
Unique Name	Gcaud1814.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	208

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_23_length_76035_cov_4.613123	contig	NODE_23_length_76035_cov_4.613123:16304..16927 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5217.XP_007006461.1
PFAMs	zf-U1
Max annot lvl	4751\|Fungi
KEGG rclass	RC00001
KEGG ko	ko:K00354,ko:K13220
KEGG Reaction	R00282
GOs	GO:0000375,GO:0000377,GO:0000398,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0045292,GO:0046483,GO:0071704,GO:0090304,GO:1901360
Evalue	1.22e-05
EggNOG OGs	KOG0150@1\|root,KOG0150@2759\|Eukaryota,38EER@33154\|Opisthokonta,3P2UA@4751\|Fungi,3V21J@5204\|Basidiomycota,3VFIC@5234\|Tremellales
EC	1.6.99.1
Description	U1 zinc finger
COG category	K
BRITE	ko00000,ko01000,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1814	Gcaud1814	Gracilaria caudata M_176_S67 male	gene	NODE_23_length_76035_cov_4.613123 16304..16927 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1814.t1.start1	Gcaud1814.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_23_length_76035_cov_4.613123 16304..16306 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1814.t1.CDS1	Gcaud1814.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 16304..16927 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1814.t1.exon1	Gcaud1814.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 16304..16927 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1814.t1.stop1	Gcaud1814.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_23_length_76035_cov_4.613123 16925..16927 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1814.t1	Gcaud1814.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_23_length_76035_cov_4.613123 16304..16927 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_23_length_76035_cov_4.613123:16304..16927+
coding sequence from alignment at NODE_23_length_76035_cov_4.613123:16304..16927+

mRNA sequence

>Gcaud1814.t1 ID=Gcaud1814.t1|Name=Gcaud1814.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=208bp
MSPKTKKLRREQTQHLCKICNIWIADNKAQRDQHETGAKHVANRQRVLRE
IANRNEKERAQARREGRRVVGENGSLAVQQMMEIAMQATQGQIKEATAEA
EAEHVEDGEHETVEPGQEVDENGYPLPANTVFQWTTVAEEDMNASQNQEG
EQITEGFAKAQGSGVKRTHESKEVVATPVEDAEERSAALATFKKRKVASG
RKKRRRQ*

spliced messenger RNA

>Gcaud1814.t1 ID=Gcaud1814.t1|Name=Gcaud1814.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=624bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:16304..16927+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACCAAAAACAAAAAAGCTTCGGCGCGAACAAACTCAGCATCTGTG
CAAAATCTGCAACATATGGATAGCAGACAACAAAGCCCAAAGAGATCAAC
ACGAAACAGGAGCAAAGCACGTAGCAAACCGCCAAAGAGTGTTGCGGGAG
ATAGCAAATCGAAACGAAAAAGAACGAGCTCAGGCAAGGAGAGAAGGAAG
ACGCGTAGTGGGTGAAAATGGGAGTCTAGCCGTGCAACAAATGATGGAGA
TTGCAATGCAAGCAACGCAAGGGCAGATTAAAGAAGCAACAGCAGAAGCA
GAAGCAGAACACGTAGAGGATGGTGAACACGAGACGGTGGAACCTGGGCA
AGAAGTGGACGAAAATGGTTATCCTTTGCCTGCTAATACCGTTTTTCAGT
GGACTACAGTTGCTGAGGAGGATATGAACGCTTCACAAAACCAAGAAGGA
GAACAAATAACGGAGGGTTTTGCAAAGGCACAAGGGTCTGGAGTGAAACG
AACACACGAAAGCAAGGAGGTAGTAGCAACACCCGTGGAAGACGCTGAAG
AGCGTTCCGCAGCGCTTGCAACCTTCAAGAAAAGAAAAGTCGCATCAGGG
CGGAAGAAGCGAAGAAGGCAGTGA

protein sequence of Gcaud1814.t1

>Gcaud1814.t1 ID=Gcaud1814.t1|Name=Gcaud1814.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=208bp
MSPKTKKLRREQTQHLCKICNIWIADNKAQRDQHETGAKHVANRQRVLRE
IANRNEKERAQARREGRRVVGENGSLAVQQMMEIAMQATQGQIKEATAEA
EAEHVEDGEHETVEPGQEVDENGYPLPANTVFQWTTVAEEDMNASQNQEG
EQITEGFAKAQGSGVKRTHESKEVVATPVEDAEERSAALATFKKRKVASG
RKKRRRQ*

mRNA from alignment at NODE_23_length_76035_cov_4.613123:16304..16927+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1814.t1 ID=Gcaud1814.t1|Name=Gcaud1814.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=624bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:16304..16927+ (Gracilaria caudata M_176_S67 male)
ATGTCACCAAAAACAAAAAAGCTTCGGCGCGAACAAACTCAGCATCTGTG
CAAAATCTGCAACATATGGATAGCAGACAACAAAGCCCAAAGAGATCAAC
ACGAAACAGGAGCAAAGCACGTAGCAAACCGCCAAAGAGTGTTGCGGGAG
ATAGCAAATCGAAACGAAAAAGAACGAGCTCAGGCAAGGAGAGAAGGAAG
ACGCGTAGTGGGTGAAAATGGGAGTCTAGCCGTGCAACAAATGATGGAGA
TTGCAATGCAAGCAACGCAAGGGCAGATTAAAGAAGCAACAGCAGAAGCA
GAAGCAGAACACGTAGAGGATGGTGAACACGAGACGGTGGAACCTGGGCA
AGAAGTGGACGAAAATGGTTATCCTTTGCCTGCTAATACCGTTTTTCAGT
GGACTACAGTTGCTGAGGAGGATATGAACGCTTCACAAAACCAAGAAGGA
GAACAAATAACGGAGGGTTTTGCAAAGGCACAAGGGTCTGGAGTGAAACG
AACACACGAAAGCAAGGAGGTAGTAGCAACACCCGTGGAAGACGCTGAAG
AGCGTTCCGCAGCGCTTGCAACCTTCAAGAAAAGAAAAGTCGCATCAGGG
CGGAAGAAGCGAAGAAGGCAGTGA

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:16304..16927+

>Gcaud1814.t1 ID=Gcaud1814.t1|Name=Gcaud1814.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=624bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:16304..16927+ (Gracilaria caudata M_176_S67 male)
ATGTCACCAAAAACAAAAAAGCTTCGGCGCGAACAAACTCAGCATCTGTG
CAAAATCTGCAACATATGGATAGCAGACAACAAAGCCCAAAGAGATCAAC
ACGAAACAGGAGCAAAGCACGTAGCAAACCGCCAAAGAGTGTTGCGGGAG
ATAGCAAATCGAAACGAAAAAGAACGAGCTCAGGCAAGGAGAGAAGGAAG
ACGCGTAGTGGGTGAAAATGGGAGTCTAGCCGTGCAACAAATGATGGAGA
TTGCAATGCAAGCAACGCAAGGGCAGATTAAAGAAGCAACAGCAGAAGCA
GAAGCAGAACACGTAGAGGATGGTGAACACGAGACGGTGGAACCTGGGCA
AGAAGTGGACGAAAATGGTTATCCTTTGCCTGCTAATACCGTTTTTCAGT
GGACTACAGTTGCTGAGGAGGATATGAACGCTTCACAAAACCAAGAAGGA
GAACAAATAACGGAGGGTTTTGCAAAGGCACAAGGGTCTGGAGTGAAACG
AACACACGAAAGCAAGGAGGTAGTAGCAACACCCGTGGAAGACGCTGAAG
AGCGTTCCGCAGCGCTTGCAACCTTCAAGAAAAGAAAAGTCGCATCAGGG
CGGAAGAAGCGAAGAAGGCAGTGA