Gcaud1831.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1831.t1
Unique Name	Gcaud1831.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	783

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_23_length_76035_cov_4.613123	contig	NODE_23_length_76035_cov_4.613123:56863..59211 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1831	Gcaud1831	Gracilaria caudata M_176_S67 male	gene	NODE_23_length_76035_cov_4.613123 56863..59211 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1831.t1.stop1	Gcaud1831.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_23_length_76035_cov_4.613123 56863..56865 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1831.t1.CDS1	Gcaud1831.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 56863..59211 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1831.t1.exon1	Gcaud1831.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 56863..59211 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1831.t1.start1	Gcaud1831.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_23_length_76035_cov_4.613123 59209..59211 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1831.t1	Gcaud1831.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_23_length_76035_cov_4.613123 56863..59211 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_23_length_76035_cov_4.613123:56863..59211-
coding sequence from alignment at NODE_23_length_76035_cov_4.613123:56863..59211-

mRNA sequence

>Gcaud1831.t1 ID=Gcaud1831.t1|Name=Gcaud1831.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=783bp
MSWRKRRASALHKDQEDTISKDDNSLHFFTSDSEIQIDQDLRTATLRKKR
ARKVSPRPSKAASAITREIEERSTSLSLAARHGNVQLVKFLLRQNCEVDH
ADKNGWTALHWAARYGYAEVVEQLIQAQCEVNIESKNEWTALHIAARYGH
YDVVRQLLKANCLVDVAHKKHGWTALHFASHYGFSDVVKLLLDASCAVDT
ANNAGRTALHLAILAGYEIVAEQLLSSSARVDICDREGDTPLHKAVPKTQ
KLIILSLIKAGANMKLENKAGRTPISLAGRVDVVALLRSLYIRYQANELE
RIWVHAQHSPLSHDQLVSCIQSANISSLTCFVIAHNLLLLAVRKRVTDKK
RIQTFGGVRDCLLKRVYLPATKLKLTAPEKYLVLQAVASAEKFGFIYSGN
EALVKFVIDLRTEIEASALEVQKATITLARNIYYLRDTCRGSGEWIWESQ
KEEEFKELGCNQEHMYADMQDLNISLNKLHSCLNEKNESSILEAVIVFCL
TIVPVVGRVAKSAAFADPKTALRYSIQQTYSALAAGVSFLPRVDFSSIWT
AAALTSNEFAMKLDSVSRKRLECVVRHSKFKTLAKLHSQITSAIDELQFI
KPDEKEDEGKASMRQRFCILASRANMDTISAQVAIEELKCFLDRSFPQDS
QRSKHVTTKIVELIDEHSRVSMDAFLLALDELKDMYSGPQQKAKFELVHR
FRKAANPDTRLLIVIAKAVLLRLFQECVGDKNSVGKEFFSGRTGAWWNDS
FVYNTLGEYATNESSIDEDGFVKASMKIMFCE*

spliced messenger RNA

>Gcaud1831.t1 ID=Gcaud1831.t1|Name=Gcaud1831.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2349bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:56863..59211- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTGGCGCAAGCGCAGAGCAAGCGCTCTTCACAAAGACCAAGAAGA
TACCATATCTAAGGATGACAATTCCCTGCATTTCTTCACAAGCGACAGCG
AAATTCAAATTGATCAAGACCTCAGGACTGCTACGCTACGGAAAAAACGG
GCTAGAAAAGTGTCCCCAAGACCTTCGAAGGCTGCGTCGGCTATCACTCG
CGAAATCGAAGAAAGAAGTACTTCGCTCAGTCTGGCAGCTCGCCATGGAA
ATGTACAGCTGGTGAAGTTCCTCTTGCGCCAAAACTGTGAAGTTGACCAT
GCAGACAAAAATGGGTGGACTGCACTTCACTGGGCGGCTCGTTACGGCTA
TGCAGAGGTCGTCGAGCAGCTGATCCAGGCACAATGTGAAGTCAACATTG
AAAGCAAGAATGAGTGGACTGCACTCCATATTGCGGCTCGTTACGGACAT
TACGACGTCGTGCGGCAGCTTTTGAAAGCAAATTGCCTGGTGGACGTTGC
ACACAAAAAACATGGATGGACTGCACTCCACTTTGCTTCTCATTACGGGT
TTTCTGACGTAGTGAAGCTGCTGCTCGATGCGAGCTGTGCAGTGGACACG
GCTAACAACGCTGGGAGGACCGCGCTTCACTTAGCTATACTAGCTGGGTA
CGAAATTGTAGCTGAGCAACTCCTTAGCAGTAGTGCCAGGGTTGACATAT
GTGATAGAGAGGGAGATACTCCTCTGCATAAGGCAGTTCCGAAGACGCAG
AAGCTTATCATTTTGAGTCTCATCAAGGCCGGAGCAAATATGAAATTGGA
AAACAAAGCTGGTAGAACACCAATTTCACTAGCTGGAAGAGTAGATGTCG
TAGCACTCCTTCGCAGTCTGTACATACGATATCAAGCAAACGAGTTAGAG
CGAATTTGGGTTCACGCACAGCACTCACCACTCAGTCACGATCAATTGGT
CTCTTGTATCCAAAGTGCGAACATCAGTTCACTCACATGCTTTGTAATCG
CGCATAATCTTTTGCTTCTCGCCGTCAGAAAACGAGTCACTGATAAGAAG
AGAATTCAAACGTTCGGAGGGGTTCGCGACTGTCTCCTGAAGCGAGTGTA
CTTACCTGCCACTAAACTAAAGCTTACGGCCCCCGAGAAATACCTGGTGT
TACAAGCGGTAGCCAGCGCTGAGAAGTTTGGCTTTATATACAGTGGAAAC
GAAGCTTTAGTCAAGTTTGTGATCGATCTCAGGACTGAAATAGAAGCTTC
TGCGCTAGAGGTGCAGAAAGCAACTATCACTTTGGCTCGAAACATTTATT
ATCTACGTGATACTTGCCGTGGCTCGGGAGAATGGATATGGGAAAGCCAA
AAAGAAGAAGAGTTCAAAGAACTAGGGTGCAACCAGGAGCACATGTATGC
AGATATGCAGGACCTTAATATCAGTCTGAATAAGTTGCATTCTTGTCTGA
ATGAGAAAAATGAAAGCAGCATACTGGAGGCAGTCATTGTGTTTTGTTTG
ACAATAGTTCCTGTGGTGGGCCGTGTAGCTAAGAGTGCGGCGTTTGCGGA
CCCAAAGACCGCACTAAGATATTCTATCCAACAAACATATTCAGCTCTAG
CGGCCGGGGTTTCTTTTCTTCCTAGAGTAGACTTCAGTAGTATTTGGACC
GCGGCAGCGCTTACAAGCAATGAATTTGCAATGAAACTGGACTCTGTTTC
TCGGAAACGACTGGAGTGTGTTGTCAGACATAGCAAGTTTAAAACGCTTG
CCAAACTTCATAGCCAGATAACATCAGCAATTGACGAGCTTCAATTTATC
AAACCAGATGAGAAGGAAGACGAAGGTAAAGCAAGCATGCGACAGCGGTT
TTGCATACTGGCATCTAGGGCAAATATGGATACCATTAGCGCGCAAGTAG
CAATCGAAGAATTGAAGTGTTTTCTGGACAGAAGTTTTCCTCAGGATTCG
CAAAGATCGAAGCACGTGACAACAAAGATTGTAGAGTTAATTGATGAGCA
CAGCCGCGTAAGTATGGACGCGTTTCTTTTAGCACTCGATGAACTGAAAG
ACATGTACTCAGGGCCACAACAGAAGGCTAAGTTTGAGCTGGTGCACCGG
TTTCGAAAGGCAGCAAACCCAGACACAAGGTTGCTGATCGTGATAGCAAA
AGCCGTTTTGCTCAGGTTGTTTCAGGAATGTGTTGGCGACAAAAATTCTG
TGGGAAAGGAGTTCTTTTCTGGAAGAACAGGAGCATGGTGGAACGACTCT
TTTGTTTACAATACCTTAGGTGAGTATGCTACGAATGAAAGCTCCATAGA
TGAGGACGGCTTTGTCAAAGCCTCGATGAAGATAATGTTCTGCGAGTAG

protein sequence of Gcaud1831.t1

>Gcaud1831.t1 ID=Gcaud1831.t1|Name=Gcaud1831.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=783bp
MSWRKRRASALHKDQEDTISKDDNSLHFFTSDSEIQIDQDLRTATLRKKR
ARKVSPRPSKAASAITREIEERSTSLSLAARHGNVQLVKFLLRQNCEVDH
ADKNGWTALHWAARYGYAEVVEQLIQAQCEVNIESKNEWTALHIAARYGH
YDVVRQLLKANCLVDVAHKKHGWTALHFASHYGFSDVVKLLLDASCAVDT
ANNAGRTALHLAILAGYEIVAEQLLSSSARVDICDREGDTPLHKAVPKTQ
KLIILSLIKAGANMKLENKAGRTPISLAGRVDVVALLRSLYIRYQANELE
RIWVHAQHSPLSHDQLVSCIQSANISSLTCFVIAHNLLLLAVRKRVTDKK
RIQTFGGVRDCLLKRVYLPATKLKLTAPEKYLVLQAVASAEKFGFIYSGN
EALVKFVIDLRTEIEASALEVQKATITLARNIYYLRDTCRGSGEWIWESQ
KEEEFKELGCNQEHMYADMQDLNISLNKLHSCLNEKNESSILEAVIVFCL
TIVPVVGRVAKSAAFADPKTALRYSIQQTYSALAAGVSFLPRVDFSSIWT
AAALTSNEFAMKLDSVSRKRLECVVRHSKFKTLAKLHSQITSAIDELQFI
KPDEKEDEGKASMRQRFCILASRANMDTISAQVAIEELKCFLDRSFPQDS
QRSKHVTTKIVELIDEHSRVSMDAFLLALDELKDMYSGPQQKAKFELVHR
FRKAANPDTRLLIVIAKAVLLRLFQECVGDKNSVGKEFFSGRTGAWWNDS
FVYNTLGEYATNESSIDEDGFVKASMKIMFCE*

mRNA from alignment at NODE_23_length_76035_cov_4.613123:56863..59211-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1831.t1 ID=Gcaud1831.t1|Name=Gcaud1831.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2349bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:56863..59211- (Gracilaria caudata M_176_S67 male)
ATGTCGTGGCGCAAGCGCAGAGCAAGCGCTCTTCACAAAGACCAAGAAGA
TACCATATCTAAGGATGACAATTCCCTGCATTTCTTCACAAGCGACAGCG
AAATTCAAATTGATCAAGACCTCAGGACTGCTACGCTACGGAAAAAACGG
GCTAGAAAAGTGTCCCCAAGACCTTCGAAGGCTGCGTCGGCTATCACTCG
CGAAATCGAAGAAAGAAGTACTTCGCTCAGTCTGGCAGCTCGCCATGGAA
ATGTACAGCTGGTGAAGTTCCTCTTGCGCCAAAACTGTGAAGTTGACCAT
GCAGACAAAAATGGGTGGACTGCACTTCACTGGGCGGCTCGTTACGGCTA
TGCAGAGGTCGTCGAGCAGCTGATCCAGGCACAATGTGAAGTCAACATTG
AAAGCAAGAATGAGTGGACTGCACTCCATATTGCGGCTCGTTACGGACAT
TACGACGTCGTGCGGCAGCTTTTGAAAGCAAATTGCCTGGTGGACGTTGC
ACACAAAAAACATGGATGGACTGCACTCCACTTTGCTTCTCATTACGGGT
TTTCTGACGTAGTGAAGCTGCTGCTCGATGCGAGCTGTGCAGTGGACACG
GCTAACAACGCTGGGAGGACCGCGCTTCACTTAGCTATACTAGCTGGGTA
CGAAATTGTAGCTGAGCAACTCCTTAGCAGTAGTGCCAGGGTTGACATAT
GTGATAGAGAGGGAGATACTCCTCTGCATAAGGCAGTTCCGAAGACGCAG
AAGCTTATCATTTTGAGTCTCATCAAGGCCGGAGCAAATATGAAATTGGA
AAACAAAGCTGGTAGAACACCAATTTCACTAGCTGGAAGAGTAGATGTCG
TAGCACTCCTTCGCAGTCTGTACATACGATATCAAGCAAACGAGTTAGAG
CGAATTTGGGTTCACGCACAGCACTCACCACTCAGTCACGATCAATTGGT
CTCTTGTATCCAAAGTGCGAACATCAGTTCACTCACATGCTTTGTAATCG
CGCATAATCTTTTGCTTCTCGCCGTCAGAAAACGAGTCACTGATAAGAAG
AGAATTCAAACGTTCGGAGGGGTTCGCGACTGTCTCCTGAAGCGAGTGTA
CTTACCTGCCACTAAACTAAAGCTTACGGCCCCCGAGAAATACCTGGTGT
TACAAGCGGTAGCCAGCGCTGAGAAGTTTGGCTTTATATACAGTGGAAAC
GAAGCTTTAGTCAAGTTTGTGATCGATCTCAGGACTGAAATAGAAGCTTC
TGCGCTAGAGGTGCAGAAAGCAACTATCACTTTGGCTCGAAACATTTATT
ATCTACGTGATACTTGCCGTGGCTCGGGAGAATGGATATGGGAAAGCCAA
AAAGAAGAAGAGTTCAAAGAACTAGGGTGCAACCAGGAGCACATGTATGC
AGATATGCAGGACCTTAATATCAGTCTGAATAAGTTGCATTCTTGTCTGA
ATGAGAAAAATGAAAGCAGCATACTGGAGGCAGTCATTGTGTTTTGTTTG
ACAATAGTTCCTGTGGTGGGCCGTGTAGCTAAGAGTGCGGCGTTTGCGGA
CCCAAAGACCGCACTAAGATATTCTATCCAACAAACATATTCAGCTCTAG
CGGCCGGGGTTTCTTTTCTTCCTAGAGTAGACTTCAGTAGTATTTGGACC
GCGGCAGCGCTTACAAGCAATGAATTTGCAATGAAACTGGACTCTGTTTC
TCGGAAACGACTGGAGTGTGTTGTCAGACATAGCAAGTTTAAAACGCTTG
CCAAACTTCATAGCCAGATAACATCAGCAATTGACGAGCTTCAATTTATC
AAACCAGATGAGAAGGAAGACGAAGGTAAAGCAAGCATGCGACAGCGGTT
TTGCATACTGGCATCTAGGGCAAATATGGATACCATTAGCGCGCAAGTAG
CAATCGAAGAATTGAAGTGTTTTCTGGACAGAAGTTTTCCTCAGGATTCG
CAAAGATCGAAGCACGTGACAACAAAGATTGTAGAGTTAATTGATGAGCA
CAGCCGCGTAAGTATGGACGCGTTTCTTTTAGCACTCGATGAACTGAAAG
ACATGTACTCAGGGCCACAACAGAAGGCTAAGTTTGAGCTGGTGCACCGG
TTTCGAAAGGCAGCAAACCCAGACACAAGGTTGCTGATCGTGATAGCAAA
AGCCGTTTTGCTCAGGTTGTTTCAGGAATGTGTTGGCGACAAAAATTCTG
TGGGAAAGGAGTTCTTTTCTGGAAGAACAGGAGCATGGTGGAACGACTCT
TTTGTTTACAATACCTTAGGTGAGTATGCTACGAATGAAAGCTCCATAGA
TGAGGACGGCTTTGTCAAAGCCTCGATGAAGATAATGTTCTGCGAGTAG

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:56863..59211-

>Gcaud1831.t1 ID=Gcaud1831.t1|Name=Gcaud1831.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2349bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:56863..59211- (Gracilaria caudata M_176_S67 male)
ATGTCGTGGCGCAAGCGCAGAGCAAGCGCTCTTCACAAAGACCAAGAAGA
TACCATATCTAAGGATGACAATTCCCTGCATTTCTTCACAAGCGACAGCG
AAATTCAAATTGATCAAGACCTCAGGACTGCTACGCTACGGAAAAAACGG
GCTAGAAAAGTGTCCCCAAGACCTTCGAAGGCTGCGTCGGCTATCACTCG
CGAAATCGAAGAAAGAAGTACTTCGCTCAGTCTGGCAGCTCGCCATGGAA
ATGTACAGCTGGTGAAGTTCCTCTTGCGCCAAAACTGTGAAGTTGACCAT
GCAGACAAAAATGGGTGGACTGCACTTCACTGGGCGGCTCGTTACGGCTA
TGCAGAGGTCGTCGAGCAGCTGATCCAGGCACAATGTGAAGTCAACATTG
AAAGCAAGAATGAGTGGACTGCACTCCATATTGCGGCTCGTTACGGACAT
TACGACGTCGTGCGGCAGCTTTTGAAAGCAAATTGCCTGGTGGACGTTGC
ACACAAAAAACATGGATGGACTGCACTCCACTTTGCTTCTCATTACGGGT
TTTCTGACGTAGTGAAGCTGCTGCTCGATGCGAGCTGTGCAGTGGACACG
GCTAACAACGCTGGGAGGACCGCGCTTCACTTAGCTATACTAGCTGGGTA
CGAAATTGTAGCTGAGCAACTCCTTAGCAGTAGTGCCAGGGTTGACATAT
GTGATAGAGAGGGAGATACTCCTCTGCATAAGGCAGTTCCGAAGACGCAG
AAGCTTATCATTTTGAGTCTCATCAAGGCCGGAGCAAATATGAAATTGGA
AAACAAAGCTGGTAGAACACCAATTTCACTAGCTGGAAGAGTAGATGTCG
TAGCACTCCTTCGCAGTCTGTACATACGATATCAAGCAAACGAGTTAGAG
CGAATTTGGGTTCACGCACAGCACTCACCACTCAGTCACGATCAATTGGT
CTCTTGTATCCAAAGTGCGAACATCAGTTCACTCACATGCTTTGTAATCG
CGCATAATCTTTTGCTTCTCGCCGTCAGAAAACGAGTCACTGATAAGAAG
AGAATTCAAACGTTCGGAGGGGTTCGCGACTGTCTCCTGAAGCGAGTGTA
CTTACCTGCCACTAAACTAAAGCTTACGGCCCCCGAGAAATACCTGGTGT
TACAAGCGGTAGCCAGCGCTGAGAAGTTTGGCTTTATATACAGTGGAAAC
GAAGCTTTAGTCAAGTTTGTGATCGATCTCAGGACTGAAATAGAAGCTTC
TGCGCTAGAGGTGCAGAAAGCAACTATCACTTTGGCTCGAAACATTTATT
ATCTACGTGATACTTGCCGTGGCTCGGGAGAATGGATATGGGAAAGCCAA
AAAGAAGAAGAGTTCAAAGAACTAGGGTGCAACCAGGAGCACATGTATGC
AGATATGCAGGACCTTAATATCAGTCTGAATAAGTTGCATTCTTGTCTGA
ATGAGAAAAATGAAAGCAGCATACTGGAGGCAGTCATTGTGTTTTGTTTG
ACAATAGTTCCTGTGGTGGGCCGTGTAGCTAAGAGTGCGGCGTTTGCGGA
CCCAAAGACCGCACTAAGATATTCTATCCAACAAACATATTCAGCTCTAG
CGGCCGGGGTTTCTTTTCTTCCTAGAGTAGACTTCAGTAGTATTTGGACC
GCGGCAGCGCTTACAAGCAATGAATTTGCAATGAAACTGGACTCTGTTTC
TCGGAAACGACTGGAGTGTGTTGTCAGACATAGCAAGTTTAAAACGCTTG
CCAAACTTCATAGCCAGATAACATCAGCAATTGACGAGCTTCAATTTATC
AAACCAGATGAGAAGGAAGACGAAGGTAAAGCAAGCATGCGACAGCGGTT
TTGCATACTGGCATCTAGGGCAAATATGGATACCATTAGCGCGCAAGTAG
CAATCGAAGAATTGAAGTGTTTTCTGGACAGAAGTTTTCCTCAGGATTCG
CAAAGATCGAAGCACGTGACAACAAAGATTGTAGAGTTAATTGATGAGCA
CAGCCGCGTAAGTATGGACGCGTTTCTTTTAGCACTCGATGAACTGAAAG
ACATGTACTCAGGGCCACAACAGAAGGCTAAGTTTGAGCTGGTGCACCGG
TTTCGAAAGGCAGCAAACCCAGACACAAGGTTGCTGATCGTGATAGCAAA
AGCCGTTTTGCTCAGGTTGTTTCAGGAATGTGTTGGCGACAAAAATTCTG
TGGGAAAGGAGTTCTTTTCTGGAAGAACAGGAGCATGGTGGAACGACTCT
TTTGTTTACAATACCTTAGGTGAGTATGCTACGAATGAAAGCTCCATAGA
TGAGGACGGCTTTGTCAAAGCCTCGATGAAGATAATGTTCTGCGAGTAG