Gcaud1809.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1809.t1
Unique NameGcaud1809.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length809
Homology
BLAST of Gcaud1809.t1 vs. uniprot
Match: R7QPU3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPU3_CHOCR)

HSP 1 Score: 476 bits (1225), Expect = 5.680e-156
Identity = 267/577 (46.27%), Postives = 376/577 (65.16%), Query Frame = 0
Query:  236 VVDYLNVDLQTPSKPLDLQNGLAYNVTRCVANLARDTETHDSLLETSLLRNLCHMLRQFTPKDLEEDELQ-SETARHTILAVSALSKSAAEPVIRSNAHKALITFAQCE-DTIAQTYSCGGLRNLARHDHLQEHEDVS--KVHRELVVSNVADALSTGMSA-VSAQAKVFSVLAFGDLMNTPHPKADLIRRRLEPTYQAFSQLLADKNVAISRVVCRVIIALFG-----EEEGNS--IVPEKLSKLIAEQSGQLVNGAVARGDKAALNAVRAMCNDQIVAKEMVDKGLLEVLVLGVRKGSSDFLQQCTAALGSLSAWGDLSQLIVSRGALAAVMRRPCMEQDARHVAAFFANLARDADLQVEIAHGGMKTLLVALSSKNDDARKEAARALYNLSLGGVTKVMVAQSGALVPLVKVVSTSTGNTRRYAVSVLTEISSALERATAFAEANVIGSLLKAVEDDYRLSCDVARCIGQLSQVAEVHGLLVKSGAVPWLVNMISRNGGRGERAGDTMLYCMIAVNNLAFSPGITREALRKSGAVPLLKSLSSSGMSTPMVLMGAKQALKNING-EAAALLPVE 799
            +VDYL   L TP    DL  G++Y+  RC +NLAR++ TH  LL+  LL  LC  LR          + Q +E    TILAV+AL+KSA   V+    HK L+ F + + +++AQ Y+ GG+RNLARH        V+  +VHRELVV+   DAL  GM+   S Q + FSVLAFGDLM T H KA +IRR LEP ++ F+ L+ +KN  I+R V R + ALFG     +  G +  + P  L  L+A++SGQ++NG VARGD  AL AV AMC D+ +A+ MVD+GLLEVLV G  KG  ++ ++  AALG L+ W  +  L+  RGAL A++ RPC++ D R    F AN+A+  + QVE+A GG+K L ++L SK++ AR++AARA YNLSLGGV++VM+ QSG L PLV+  S+S G+TRR+A++ L +IS ++E      EA+ I  +L+A ++D R++ D A CI  +SQ+ E HG L +SGA  WLV M+S+NGGRG  A +TM Y  + + NLA+S G+TR ALR++GA+ +L ++S+S M  P   M +KQAL+N+ G E   +LPV+
Sbjct:    1 MVDYL-AGLSTPPTQTDLGAGISYHAVRCASNLARNSLTHAHLLDAGLLPLLCDALRTADVSHFAAADHQLTELVLCTILAVAALAKSAPSDVVAGGGHKRLLYFMKEQHESVAQMYAAGGIRNLARHGD----RTVANWRVHRELVVNGAVDALRAGMAKEASPQTRTFSVLAFGDLMTTGHHKAAIIRRWLEPAFRDFANLVNEKNAGIARTVYRTLTALFGGGGTDKRNGETPVLAPPALCALLAKESGQIINGPVARGDLPALKAVHAMCRDETLAQGMVDQGLLEVLVRGASKGKGEYWEESVAALGILAGWEKVQPLMAPRGALKAILARPCLKHDGRWTVQFLANMAKSGNHQVEVARGGLKVLSLSLVSKDEAARRDAARAFYNLSLGGVSRVMLGQSGILGPLVRTASSSVGDTRRFAIATLAKISESMEHTIKLVEADTISVMLQAAKEDSRIAKDAAFCIATMSQMVEAHGSLARSGAAAWLVEMLSKNGGRGPDAAETMQYAALGICNLAYSAGVTRNALRENGALSVLTAISASTMGAPQTAMISKQALRNLKGNEKPGMLPVQ 572          
BLAST of Gcaud1809.t1 vs. uniprot
Match: A0A7S0BPX2_9RHOD (Vacuolar protein 8 n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BPX2_9RHOD)

HSP 1 Score: 160 bits (404), Expect = 4.180e-37
Identity = 158/675 (23.41%), Postives = 305/675 (45.19%), Query Frame = 0
Query:  148 ELSLRLNIVRLLADLAKQNESHDFFVKADIFSILDRIVAESAAGMREGWLEWFYRYFSSGSKPETEK-----PSNETNGNKPPFDELSTSGDAVVDYLNVDLQTPSKPLDLQNGLAYNVTRCVANLARDTETHDSLLETSLLRNLCHMLRQFTPKDLEEDELQSETARHTILAVSALSKSAAEPVIRSNAHKALITFAQCE--DTIAQTYSCGGLRNLARHDHLQEHEDVSKVHRELVVSNVADAL-STGMSAVSAQAKVFSVLAFGDLMNTPHPKADLIRRRLEP--TYQAFSQLLADKNVAISRVVCRVIIALFG-----EEEGNSIVPEKLSKLIAEQSGQLVNGAVARGDKAALNAVRAMCNDQIVAKEMVDKGLLEVLVLGVRKGSSDFLQQCTAALGSLSAWGDLSQLIVSRGALAAVMR-RPCMEQDARHVAAFFANLARDADLQVEIAH-GGMKTLLVALSSKNDD--ARKEAARALYNLSLGGVTKVMVAQSGALVPLVKVVSTSTGNTRRYAVSVLTEISSALERATAFAEANVIGSLLKAVEDDYRLSCDVARCIGQLSQVAEVHGLLVKSGAVPWLVNMISRNGGRGERAGDTMLYCMIAVNNLAFSPGITREALRKSGAVPLLKSLSSSGMSTPMVLMGAKQALKNINGEAAALLPVENVTP 803
            +L   L++V L   LA +N  +D +++  I  ++ R+  + AA ++      F +  +  S  E  K     P +  N  K  F  L   G    D   +  +TP   L     L+   ++ +AN+A+    +   ++ + + NLC+ + + +           ET R+ +L ++ +      P       + ++ F   E  D ++Q Y+ GGLRN+ ++         S +H+ LV+     AL +  +++   +A+  +  A  DL  + + +A++IR R+    T++A  ++L   N  + R   + I A+       +     IV +     +  Q  +L  G +     AA + +  +     +++  ++ G   V++            +   AL  +S   + +  +V  G L  V+  R         +    ANL R  +L+ E+AH GG+  L   L+S N D   +KEA R L+NLS+ G+++VMV Q G+L+PL++ V       +  AV  L+ +   LE +    E   +  L+   ++D  L C    C+G+ + + E+H  +V+ G V    N+I     R  R+ + ++Y ++ + NLA S  + RE +R++GA+ LL S++ + + +  +   A+  L N+      ++ V   +P
Sbjct:  105 DLPAELSVV-LKTLLASENVDYDIYIR--ILKVISRLSEKQAAALK------FLKTDAVDSIYEVLKDVVGWPWDSGNYAKKMFHRLFLGG---TDNTRLAEKTPQGVL-----LSELCSKILANIAKVALDYHPFVKDNRI-NLCNRMIKLSEN--------VETRRNMLLILACIVSKEGFPEDSGTTLQNILEFVSAENPDPVSQWYATGGLRNMCKN---------SSMHKNLVLKGAIPALVNVLLTSPEPKAQALAASAVADLSTSAYARAEVIRVRMVDSLTFEALGRVLKSSNQGVLRSTSKAIDAILSGVPLNDRARQPIVDQFKKAGVPGQITRLSLGRLPPVVSAATSCLYTLAAIDGLSEPALEAGAARVIIGACNSFDPGMASRALDALAQMSESSERADYLVQAGVLRVVLAIRSTNPVITYPLTILLANLTRKEELRAEVAHEGGLVLLNAMLTSGNIDEGTKKEALRVLHNLSVSGLSRVMVVQYGSLLPLIENVKHENAEMKLLAVKTLSNLMEGLESSMKAFETGGLAPLIACGKEDGELGCRAVLCVGEFTNLQELHSEIVRQGGVELFANVI-----RAGRSSEAVVYAVLGLCNLAASE-VARERIREAGAIGLLNSVAHTMLYSGEIAAVAEAGLANLQKGEKTMIQVLPASP 738          
BLAST of Gcaud1809.t1 vs. uniprot
Match: M1V7Q9_CYAM1 (Vacuolar protein 8 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V7Q9_CYAM1)

HSP 1 Score: 75.9 bits (185), Expect = 2.270e-10
Identity = 132/582 (22.68%), Postives = 238/582 (40.89%), Query Frame = 0
Query:  274 THDSLLETSLLRNLC------HMLRQFTPKDLEEDELQSETARHTILAVSALSKSAAEPVIRSNAHKALITFAQCEDTIAQTYSCGGLRNLARHDH----LQEHEDVSKVHRELVVSNVADALSTGMSAV--SAQAKVFSVLAFGDLM--------NTPHPKADLIRRRLEPTYQAFSQLLADKNVAISRVVCRVIIALF------GEEEGNSIV----PEKLSKLIAEQSG-QLVNGAVARGDKAALNAVRAMCND-----QIVAKE--MVDKGLLEVL--VLGVR-KGSSDFLQQCTAALGSLSAWGDLSQLIVSRGALAAVM-----RRPCMEQDARHVAAFFANLAR--DADLQVEIAHGGMKTLL---------------VALSSKNDDARKEAARALYNLSLGGVTKVMVAQSGALVPLVKVVSTSTGNTRRYAVSVLTEISSALERATAFAEANVIGSLLKAVEDDYRLSCDVARC----IGQLSQVAEVHGLLVKSGAVPWLVNMISRNGGRGERAGDTMLYCMIAVNNLAFSPGITREALRKSGAVPLLKSLSSSGMSTPMVLMGAKQALKNI 788
            T  S  ET L++ L       H  ++ T   +       ET R  IL ++ +S+ AA    + N  + L++  + +D+    Y+  GLR+LA        L   E + ++ R +  S+     +  +  +  +A AK     +  D+         + P    D++R  L        +  A +     R  C+ I AL       GE    + +      +L ++     G        A    AAL+A   M        Q++A++   + + L + +    GV  +  S   +     +G LS   D   L+ ++G   A+      R      +A+ +    ANL+R  +A L +  + G ++ L+                 +   ND  R+E ARAL+N+S GG+++VM AQ+G +   V++ +    + RRY V  L+  +  +E +   A+AN +  L  AV    R   + AR     + +L+   ++H  L+K GA  +     +++        ++  Y + A+ NL+ +P   R  L+  G   LL  L+ S    P + M A   + NI
Sbjct:  284 TATSADETRLMKTLACALASVHEAQKNTTMLISTQAQIRETERALILCIANVSRLAAFATPKRNFLRELLSALESDDSSVAQYALSGLRSLANQAPMLAALTSEEALERLGRVIARSDEPGLRTMALRILQDAAFAKSPGTTSAIDMRAANRFEKCHIPETLLDVLRENLSGRNDTGPERDAAQMELPQRAACKTIAALCSVPGAPGEHLSRAFLLHGADRELLRIAETFEGIDRFRPPHATVGAAALDAFAVMMQSARIRVQLIARDASFLVRRLADCVPDAEGVTSRVPSPTCRSLLRLIGQLSEDSDTLYLLANQGLCQALYGILQGRLSLSTNEAQILVHTIANLSRIDNAKLDLLGSRGALRILMKLPTLWAQASGNQVQAEVIGNNDSLRRELARALFNVSTGGLSRVMAAQAGGVEAAVRLATDPDPSVRRYGVRALSLFAEQIENSIRIAQANGLPVLASAVAQR-RTDPETARAALLALAELTNNVDLHPHLLKLGAGTYFAQYATQSVDI-----ESQQYALAALCNLSATP-TGRATLQSLGVHRLLSGLALSAAVPPELAMLANMVVANI 858          
BLAST of Gcaud1809.t1 vs. uniprot
Match: A0A7J7IRV8_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IRV8_9RHOD)

HSP 1 Score: 63.5 bits (153), Expect = 9.320e-7
Identity = 69/281 (24.56%), Postives = 127/281 (45.20%), Query Frame = 0
Query:  534 LGSLSAWGDLSQLIVSRG---ALAAVM--RRPCMEQDARHVAAFFANLAR--DADLQVEIAHGGMKTLL---------------VALSSKNDDARKEAARALYNLSLGGVTKVMVAQSGALVPLVKVVSTSTGNTRRYAVSVLTEISSALERATAFAEANVIGSLLKAVEDDYRLSCDVARC----IGQLSQVAEVHGLLVKSGAVPWLVNMISRNGGRGERAGDTMLYCMIAVNNLAFSPGITREALRKSGAVPLLKSLSSSGMSTPMVLMGAKQALKNI 788
            +G LS   D+  L+ ++G   AL +++  +      +A+ +    ANL+R   A L +  + G ++ L+                     N+  R+E ARA++N+S  G+++VM AQ+G +   V + S S    RRY +  L+  +  +E +   A+AN +  L  AV +  R   + AR     + +L+   ++H  L+  GA  +     +++        ++  Y + A+ NL+ +P   R  L+  G   LL  L+ S      + M A   + NI
Sbjct:  177 IGQLSEDSDILYLLANQGLCQALYSILQGKLSLSSSEAQMLVHTVANLSRIDTAKLDLLGSRGALRLLMRLPLFWAQSPASRPQAHFIGNNEALRRELARAIFNVSTAGLSRVMAAQAGGVEAAVYLASDSDTVVRRYGIRALSLFAEQIENSIRIAQANGVPVLASAVANR-RTDPETARAALLALAELTNNVDLHAQLLTLGAGSYFAQYATQSVDI-----ESQQYALAALCNLSATPA-GRTTLQNLGVHRLLSGLALSAAVPAELAMLANMVVANI 450          
The following BLAST results are available for this feature:
BLAST of Gcaud1809.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
R7QPU3_CHOCR5.680e-15646.27Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0BPX2_9RHOD4.180e-3723.41Vacuolar protein 8 n=3 Tax=Rhodosorus marinus TaxI... [more]
M1V7Q9_CYAM12.270e-1022.68Vacuolar protein 8 n=1 Tax=Cyanidioschyzon merolae... [more]
A0A7J7IRV8_9RHOD9.320e-724.56Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000225ArmadilloSMARTSM00185arm_5coord: 498..539
e-value: 12.0
score: 12.6
coord: 619..659
e-value: 170.0
score: 3.6
coord: 320..360
e-value: 15.0
score: 11.8
coord: 119..164
e-value: 83.0
score: 6.1
coord: 578..618
e-value: 0.2
score: 20.8
coord: 660..699
e-value: 72.0
score: 6.6
coord: 747..790
e-value: 400.0
score: 0.8
IPR000225ArmadilloPROSITEPS50176ARM_REPEATcoord: 589..631
score: 8.6974
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 480..794
e-value: 6.1E-35
score: 122.8
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 97..479
e-value: 2.1E-11
score: 45.1
IPR045156Vacuolar protein 8PANTHERPTHR47249VACUOLAR PROTEIN 8coord: 477..720
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 114..721
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 488..787

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_23_length_76035_cov_4.613123contigNODE_23_length_76035_cov_4.613123:802..3228 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1809.t1Gcaud1809.t1Gracilaria caudata M_176_S67 malemRNANODE_23_length_76035_cov_4.613123 802..3228 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1809.t1 ID=Gcaud1809.t1|Name=Gcaud1809.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=809bp
MQSLSRVSRTAACSLVRHARRLSLNSSRSRNSASSAGPSVAVLSTAATVG
VFAYCDADVAVSPVPPPTFLSTAPAQLSARHEGGIFVSQKSPPSQFDALL
EEVSEGDARAIHTLALLVNDIHNHSDLLKANVVSALRDALFVCEKEHELS
LRLNIVRLLADLAKQNESHDFFVKADIFSILDRIVAESAAGMREGWLEWF
YRYFSSGSKPETEKPSNETNGNKPPFDELSTSGDAVVDYLNVDLQTPSKP
LDLQNGLAYNVTRCVANLARDTETHDSLLETSLLRNLCHMLRQFTPKDLE
EDELQSETARHTILAVSALSKSAAEPVIRSNAHKALITFAQCEDTIAQTY
SCGGLRNLARHDHLQEHEDVSKVHRELVVSNVADALSTGMSAVSAQAKVF
SVLAFGDLMNTPHPKADLIRRRLEPTYQAFSQLLADKNVAISRVVCRVII
ALFGEEEGNSIVPEKLSKLIAEQSGQLVNGAVARGDKAALNAVRAMCNDQ
IVAKEMVDKGLLEVLVLGVRKGSSDFLQQCTAALGSLSAWGDLSQLIVSR
GALAAVMRRPCMEQDARHVAAFFANLARDADLQVEIAHGGMKTLLVALSS
KNDDARKEAARALYNLSLGGVTKVMVAQSGALVPLVKVVSTSTGNTRRYA
VSVLTEISSALERATAFAEANVIGSLLKAVEDDYRLSCDVARCIGQLSQV
AEVHGLLVKSGAVPWLVNMISRNGGRGERAGDTMLYCMIAVNNLAFSPGI
TREALRKSGAVPLLKSLSSSGMSTPMVLMGAKQALKNINGEAAALLPVEN
VTPPGDPE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000225Armadillo
IPR011989ARM-like
IPR045156Vac8
IPR016024ARM-type_fold