|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005704025.1 |
| Preferred name | KIF17 |
| PFAMs | Arm,EDR1,Kinesin |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K10396,ko:K20198 |
| KEGG Pathway | ko04144,ko04728,map04144,map04728 |
| GOs | GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005871,GO:0005875,GO:0008017,GO:0008092,GO:0015630,GO:0015631,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464 |
| Evalue | 5.74e-46 |
| EggNOG OGs | COG5059@1|root,KOG0240@2759|Eukaryota |
| Description | microtubule motor activity |
| COG category | Z |
| BRITE | ko00000,ko00001,ko04131,ko04147,ko04812 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1809.t1.start1 | Gcaud1809.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_23_length_76035_cov_4.613123 802..804 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1809.t1.stop1 | Gcaud1809.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_23_length_76035_cov_4.613123 3226..3228 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1809.t1 ID=Gcaud1809.t1|Name=Gcaud1809.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=809bp MQSLSRVSRTAACSLVRHARRLSLNSSRSRNSASSAGPSVAVLSTAATVG VFAYCDADVAVSPVPPPTFLSTAPAQLSARHEGGIFVSQKSPPSQFDALL EEVSEGDARAIHTLALLVNDIHNHSDLLKANVVSALRDALFVCEKEHELS LRLNIVRLLADLAKQNESHDFFVKADIFSILDRIVAESAAGMREGWLEWF YRYFSSGSKPETEKPSNETNGNKPPFDELSTSGDAVVDYLNVDLQTPSKP LDLQNGLAYNVTRCVANLARDTETHDSLLETSLLRNLCHMLRQFTPKDLE EDELQSETARHTILAVSALSKSAAEPVIRSNAHKALITFAQCEDTIAQTY SCGGLRNLARHDHLQEHEDVSKVHRELVVSNVADALSTGMSAVSAQAKVF SVLAFGDLMNTPHPKADLIRRRLEPTYQAFSQLLADKNVAISRVVCRVII ALFGEEEGNSIVPEKLSKLIAEQSGQLVNGAVARGDKAALNAVRAMCNDQ IVAKEMVDKGLLEVLVLGVRKGSSDFLQQCTAALGSLSAWGDLSQLIVSR GALAAVMRRPCMEQDARHVAAFFANLARDADLQVEIAHGGMKTLLVALSS KNDDARKEAARALYNLSLGGVTKVMVAQSGALVPLVKVVSTSTGNTRRYA VSVLTEISSALERATAFAEANVIGSLLKAVEDDYRLSCDVARCIGQLSQV AEVHGLLVKSGAVPWLVNMISRNGGRGERAGDTMLYCMIAVNNLAFSPGI TREALRKSGAVPLLKSLSSSGMSTPMVLMGAKQALKNINGEAAALLPVEN VTPPGDPE* back to topspliced messenger RNA >Gcaud1809.t1 ID=Gcaud1809.t1|Name=Gcaud1809.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2427bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:802..3228+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCAGTCTCTCTCCCGAGTATCTCGCACAGCGGCTTGTTCTCTTGTGCG ACATGCACGACGATTATCGCTCAACTCGAGCCGCAGTCGGAATAGCGCTT CTTCTGCTGGGCCAAGTGTCGCCGTTCTGTCTACTGCTGCGACTGTTGGG GTCTTTGCGTATTGTGATGCAGATGTGGCTGTCTCTCCTGTTCCACCGCC CACCTTCCTAAGCACTGCCCCTGCACAGCTAAGTGCGCGACATGAGGGCG GTATTTTTGTCTCTCAAAAGAGCCCTCCTTCTCAGTTCGACGCACTACTT GAAGAGGTAAGCGAAGGGGATGCTCGCGCAATTCATACGCTCGCGCTGTT GGTTAACGACATACACAATCATTCTGATCTGCTCAAAGCAAACGTTGTTT CAGCTCTGCGGGATGCGCTTTTTGTTTGTGAGAAAGAGCATGAGCTTTCG CTTCGTCTGAACATTGTGAGATTGCTTGCCGATCTAGCCAAACAGAATGA ATCGCATGATTTCTTCGTGAAAGCAGACATTTTCTCGATCTTGGATCGTA TCGTTGCTGAGAGCGCTGCGGGAATGAGAGAAGGTTGGCTAGAATGGTTT TATCGATATTTCTCTTCTGGCTCGAAGCCAGAGACCGAGAAGCCATCAAA CGAGACCAATGGGAACAAACCGCCATTTGATGAACTCTCAACTTCTGGAG ATGCTGTTGTAGACTACCTGAACGTTGATCTCCAGACACCTTCGAAGCCA CTGGATTTACAGAATGGTTTGGCTTATAATGTCACACGCTGTGTCGCCAA TCTTGCTCGTGATACAGAGACGCACGATTCCTTGCTAGAGACAAGTTTGC TACGAAATCTCTGTCATATGCTTCGGCAGTTCACACCGAAGGATTTGGAA GAAGACGAACTTCAGTCCGAAACCGCGCGTCACACAATTCTTGCTGTAAG TGCGTTGAGCAAGAGTGCTGCAGAACCAGTGATCCGATCGAATGCTCACA AAGCGCTTATTACTTTTGCTCAGTGTGAAGATACGATAGCTCAAACATAT TCATGCGGAGGTCTACGAAACCTGGCTCGGCACGATCATCTGCAAGAGCA TGAAGATGTTTCCAAAGTGCATCGCGAGCTGGTGGTATCGAATGTTGCGG ATGCTCTGAGTACCGGAATGAGCGCTGTTTCGGCACAGGCGAAAGTATTT TCTGTACTTGCATTCGGGGATTTAATGAACACGCCTCATCCGAAGGCCGA TCTCATTCGGAGGCGCTTGGAACCAACATATCAGGCGTTTTCTCAATTAT TAGCGGATAAGAATGTTGCGATATCTCGTGTGGTTTGTCGAGTGATCATA GCACTCTTTGGAGAAGAAGAAGGTAATTCTATTGTCCCAGAGAAGTTATC AAAGCTGATTGCTGAGCAAAGCGGGCAACTCGTTAATGGAGCGGTCGCAC GTGGAGATAAAGCTGCTTTGAATGCCGTACGTGCGATGTGTAATGATCAA ATTGTGGCGAAGGAAATGGTTGACAAGGGTCTGTTGGAAGTCCTGGTCCT TGGGGTTAGGAAAGGAAGTTCTGATTTCTTGCAGCAATGTACCGCAGCTT TGGGTTCTTTAAGCGCTTGGGGCGATTTATCGCAACTTATTGTATCTCGC GGGGCGTTGGCAGCAGTCATGAGAAGACCGTGTATGGAACAGGATGCGCG CCATGTGGCGGCTTTTTTCGCAAACTTGGCAAGAGATGCTGATCTACAAG TGGAAATTGCTCATGGCGGAATGAAAACATTGCTGGTTGCACTTTCATCG AAGAATGACGATGCTAGAAAAGAAGCGGCGAGAGCCTTGTACAATCTTTC ACTCGGTGGGGTCACAAAAGTAATGGTGGCTCAGAGTGGCGCGTTAGTAC CTTTGGTAAAGGTTGTATCGACATCAACTGGGAATACGCGACGATACGCC GTAAGTGTGTTAACAGAGATATCATCGGCCCTCGAGCGTGCTACGGCATT TGCCGAAGCCAATGTGATTGGATCGCTGCTGAAGGCTGTTGAGGACGATT ATAGGCTTTCGTGTGATGTCGCCAGATGTATCGGTCAACTTTCACAGGTT GCAGAGGTTCATGGGTTGTTGGTTAAGAGTGGAGCTGTTCCATGGCTTGT CAATATGATTTCTCGAAATGGAGGGAGGGGAGAAAGGGCTGGGGATACGA TGTTATATTGTATGATTGCAGTTAATAACCTTGCGTTTTCACCTGGTATT ACGAGAGAAGCACTTCGGAAGAGCGGAGCTGTTCCGCTTCTTAAGTCTTT GTCTTCGTCTGGAATGAGCACTCCTATGGTATTGATGGGGGCGAAGCAGG CGCTGAAGAACATAAACGGAGAAGCGGCAGCTTTGCTTCCGGTTGAGAAT GTTACACCGCCCGGGGATCCAGAGTGA back to topprotein sequence of Gcaud1809.t1 >Gcaud1809.t1 ID=Gcaud1809.t1|Name=Gcaud1809.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=809bp
MQSLSRVSRTAACSLVRHARRLSLNSSRSRNSASSAGPSVAVLSTAATVG VFAYCDADVAVSPVPPPTFLSTAPAQLSARHEGGIFVSQKSPPSQFDALL EEVSEGDARAIHTLALLVNDIHNHSDLLKANVVSALRDALFVCEKEHELS LRLNIVRLLADLAKQNESHDFFVKADIFSILDRIVAESAAGMREGWLEWF YRYFSSGSKPETEKPSNETNGNKPPFDELSTSGDAVVDYLNVDLQTPSKP LDLQNGLAYNVTRCVANLARDTETHDSLLETSLLRNLCHMLRQFTPKDLE EDELQSETARHTILAVSALSKSAAEPVIRSNAHKALITFAQCEDTIAQTY SCGGLRNLARHDHLQEHEDVSKVHRELVVSNVADALSTGMSAVSAQAKVF SVLAFGDLMNTPHPKADLIRRRLEPTYQAFSQLLADKNVAISRVVCRVII ALFGEEEGNSIVPEKLSKLIAEQSGQLVNGAVARGDKAALNAVRAMCNDQ IVAKEMVDKGLLEVLVLGVRKGSSDFLQQCTAALGSLSAWGDLSQLIVSR GALAAVMRRPCMEQDARHVAAFFANLARDADLQVEIAHGGMKTLLVALSS KNDDARKEAARALYNLSLGGVTKVMVAQSGALVPLVKVVSTSTGNTRRYA VSVLTEISSALERATAFAEANVIGSLLKAVEDDYRLSCDVARCIGQLSQV AEVHGLLVKSGAVPWLVNMISRNGGRGERAGDTMLYCMIAVNNLAFSPGI TREALRKSGAVPLLKSLSSSGMSTPMVLMGAKQALKNINGEAAALLPVEN VTPPGDPE* back to topmRNA from alignment at NODE_23_length_76035_cov_4.613123:802..3228+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1809.t1 ID=Gcaud1809.t1|Name=Gcaud1809.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2427bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:802..3228+ (Gracilaria caudata M_176_S67 male) ATGCAGTCTCTCTCCCGAGTATCTCGCACAGCGGCTTGTTCTCTTGTGCG
ACATGCACGACGATTATCGCTCAACTCGAGCCGCAGTCGGAATAGCGCTT
CTTCTGCTGGGCCAAGTGTCGCCGTTCTGTCTACTGCTGCGACTGTTGGG
GTCTTTGCGTATTGTGATGCAGATGTGGCTGTCTCTCCTGTTCCACCGCC
CACCTTCCTAAGCACTGCCCCTGCACAGCTAAGTGCGCGACATGAGGGCG
GTATTTTTGTCTCTCAAAAGAGCCCTCCTTCTCAGTTCGACGCACTACTT
GAAGAGGTAAGCGAAGGGGATGCTCGCGCAATTCATACGCTCGCGCTGTT
GGTTAACGACATACACAATCATTCTGATCTGCTCAAAGCAAACGTTGTTT
CAGCTCTGCGGGATGCGCTTTTTGTTTGTGAGAAAGAGCATGAGCTTTCG
CTTCGTCTGAACATTGTGAGATTGCTTGCCGATCTAGCCAAACAGAATGA
ATCGCATGATTTCTTCGTGAAAGCAGACATTTTCTCGATCTTGGATCGTA
TCGTTGCTGAGAGCGCTGCGGGAATGAGAGAAGGTTGGCTAGAATGGTTT
TATCGATATTTCTCTTCTGGCTCGAAGCCAGAGACCGAGAAGCCATCAAA
CGAGACCAATGGGAACAAACCGCCATTTGATGAACTCTCAACTTCTGGAG
ATGCTGTTGTAGACTACCTGAACGTTGATCTCCAGACACCTTCGAAGCCA
CTGGATTTACAGAATGGTTTGGCTTATAATGTCACACGCTGTGTCGCCAA
TCTTGCTCGTGATACAGAGACGCACGATTCCTTGCTAGAGACAAGTTTGC
TACGAAATCTCTGTCATATGCTTCGGCAGTTCACACCGAAGGATTTGGAA
GAAGACGAACTTCAGTCCGAAACCGCGCGTCACACAATTCTTGCTGTAAG
TGCGTTGAGCAAGAGTGCTGCAGAACCAGTGATCCGATCGAATGCTCACA
AAGCGCTTATTACTTTTGCTCAGTGTGAAGATACGATAGCTCAAACATAT
TCATGCGGAGGTCTACGAAACCTGGCTCGGCACGATCATCTGCAAGAGCA
TGAAGATGTTTCCAAAGTGCATCGCGAGCTGGTGGTATCGAATGTTGCGG
ATGCTCTGAGTACCGGAATGAGCGCTGTTTCGGCACAGGCGAAAGTATTT
TCTGTACTTGCATTCGGGGATTTAATGAACACGCCTCATCCGAAGGCCGA
TCTCATTCGGAGGCGCTTGGAACCAACATATCAGGCGTTTTCTCAATTAT
TAGCGGATAAGAATGTTGCGATATCTCGTGTGGTTTGTCGAGTGATCATA
GCACTCTTTGGAGAAGAAGAAGGTAATTCTATTGTCCCAGAGAAGTTATC
AAAGCTGATTGCTGAGCAAAGCGGGCAACTCGTTAATGGAGCGGTCGCAC
GTGGAGATAAAGCTGCTTTGAATGCCGTACGTGCGATGTGTAATGATCAA
ATTGTGGCGAAGGAAATGGTTGACAAGGGTCTGTTGGAAGTCCTGGTCCT
TGGGGTTAGGAAAGGAAGTTCTGATTTCTTGCAGCAATGTACCGCAGCTT
TGGGTTCTTTAAGCGCTTGGGGCGATTTATCGCAACTTATTGTATCTCGC
GGGGCGTTGGCAGCAGTCATGAGAAGACCGTGTATGGAACAGGATGCGCG
CCATGTGGCGGCTTTTTTCGCAAACTTGGCAAGAGATGCTGATCTACAAG
TGGAAATTGCTCATGGCGGAATGAAAACATTGCTGGTTGCACTTTCATCG
AAGAATGACGATGCTAGAAAAGAAGCGGCGAGAGCCTTGTACAATCTTTC
ACTCGGTGGGGTCACAAAAGTAATGGTGGCTCAGAGTGGCGCGTTAGTAC
CTTTGGTAAAGGTTGTATCGACATCAACTGGGAATACGCGACGATACGCC
GTAAGTGTGTTAACAGAGATATCATCGGCCCTCGAGCGTGCTACGGCATT
TGCCGAAGCCAATGTGATTGGATCGCTGCTGAAGGCTGTTGAGGACGATT
ATAGGCTTTCGTGTGATGTCGCCAGATGTATCGGTCAACTTTCACAGGTT
GCAGAGGTTCATGGGTTGTTGGTTAAGAGTGGAGCTGTTCCATGGCTTGT
CAATATGATTTCTCGAAATGGAGGGAGGGGAGAAAGGGCTGGGGATACGA
TGTTATATTGTATGATTGCAGTTAATAACCTTGCGTTTTCACCTGGTATT
ACGAGAGAAGCACTTCGGAAGAGCGGAGCTGTTCCGCTTCTTAAGTCTTT
GTCTTCGTCTGGAATGAGCACTCCTATGGTATTGATGGGGGCGAAGCAGG
CGCTGAAGAACATAAACGGAGAAGCGGCAGCTTTGCTTCCGGTTGAGAAT
GTTACACCGCCCGGGGATCCAGAGTGA back to topCoding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:802..3228+ >Gcaud1809.t1 ID=Gcaud1809.t1|Name=Gcaud1809.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2427bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:802..3228+ (Gracilaria caudata M_176_S67 male) ATGCAGTCTCTCTCCCGAGTATCTCGCACAGCGGCTTGTTCTCTTGTGCG ACATGCACGACGATTATCGCTCAACTCGAGCCGCAGTCGGAATAGCGCTT CTTCTGCTGGGCCAAGTGTCGCCGTTCTGTCTACTGCTGCGACTGTTGGG GTCTTTGCGTATTGTGATGCAGATGTGGCTGTCTCTCCTGTTCCACCGCC CACCTTCCTAAGCACTGCCCCTGCACAGCTAAGTGCGCGACATGAGGGCG GTATTTTTGTCTCTCAAAAGAGCCCTCCTTCTCAGTTCGACGCACTACTT GAAGAGGTAAGCGAAGGGGATGCTCGCGCAATTCATACGCTCGCGCTGTT GGTTAACGACATACACAATCATTCTGATCTGCTCAAAGCAAACGTTGTTT CAGCTCTGCGGGATGCGCTTTTTGTTTGTGAGAAAGAGCATGAGCTTTCG CTTCGTCTGAACATTGTGAGATTGCTTGCCGATCTAGCCAAACAGAATGA ATCGCATGATTTCTTCGTGAAAGCAGACATTTTCTCGATCTTGGATCGTA TCGTTGCTGAGAGCGCTGCGGGAATGAGAGAAGGTTGGCTAGAATGGTTT TATCGATATTTCTCTTCTGGCTCGAAGCCAGAGACCGAGAAGCCATCAAA CGAGACCAATGGGAACAAACCGCCATTTGATGAACTCTCAACTTCTGGAG ATGCTGTTGTAGACTACCTGAACGTTGATCTCCAGACACCTTCGAAGCCA CTGGATTTACAGAATGGTTTGGCTTATAATGTCACACGCTGTGTCGCCAA TCTTGCTCGTGATACAGAGACGCACGATTCCTTGCTAGAGACAAGTTTGC TACGAAATCTCTGTCATATGCTTCGGCAGTTCACACCGAAGGATTTGGAA GAAGACGAACTTCAGTCCGAAACCGCGCGTCACACAATTCTTGCTGTAAG TGCGTTGAGCAAGAGTGCTGCAGAACCAGTGATCCGATCGAATGCTCACA AAGCGCTTATTACTTTTGCTCAGTGTGAAGATACGATAGCTCAAACATAT TCATGCGGAGGTCTACGAAACCTGGCTCGGCACGATCATCTGCAAGAGCA TGAAGATGTTTCCAAAGTGCATCGCGAGCTGGTGGTATCGAATGTTGCGG ATGCTCTGAGTACCGGAATGAGCGCTGTTTCGGCACAGGCGAAAGTATTT TCTGTACTTGCATTCGGGGATTTAATGAACACGCCTCATCCGAAGGCCGA TCTCATTCGGAGGCGCTTGGAACCAACATATCAGGCGTTTTCTCAATTAT TAGCGGATAAGAATGTTGCGATATCTCGTGTGGTTTGTCGAGTGATCATA GCACTCTTTGGAGAAGAAGAAGGTAATTCTATTGTCCCAGAGAAGTTATC AAAGCTGATTGCTGAGCAAAGCGGGCAACTCGTTAATGGAGCGGTCGCAC GTGGAGATAAAGCTGCTTTGAATGCCGTACGTGCGATGTGTAATGATCAA ATTGTGGCGAAGGAAATGGTTGACAAGGGTCTGTTGGAAGTCCTGGTCCT TGGGGTTAGGAAAGGAAGTTCTGATTTCTTGCAGCAATGTACCGCAGCTT TGGGTTCTTTAAGCGCTTGGGGCGATTTATCGCAACTTATTGTATCTCGC GGGGCGTTGGCAGCAGTCATGAGAAGACCGTGTATGGAACAGGATGCGCG CCATGTGGCGGCTTTTTTCGCAAACTTGGCAAGAGATGCTGATCTACAAG TGGAAATTGCTCATGGCGGAATGAAAACATTGCTGGTTGCACTTTCATCG AAGAATGACGATGCTAGAAAAGAAGCGGCGAGAGCCTTGTACAATCTTTC ACTCGGTGGGGTCACAAAAGTAATGGTGGCTCAGAGTGGCGCGTTAGTAC CTTTGGTAAAGGTTGTATCGACATCAACTGGGAATACGCGACGATACGCC GTAAGTGTGTTAACAGAGATATCATCGGCCCTCGAGCGTGCTACGGCATT TGCCGAAGCCAATGTGATTGGATCGCTGCTGAAGGCTGTTGAGGACGATT ATAGGCTTTCGTGTGATGTCGCCAGATGTATCGGTCAACTTTCACAGGTT GCAGAGGTTCATGGGTTGTTGGTTAAGAGTGGAGCTGTTCCATGGCTTGT CAATATGATTTCTCGAAATGGAGGGAGGGGAGAAAGGGCTGGGGATACGA TGTTATATTGTATGATTGCAGTTAATAACCTTGCGTTTTCACCTGGTATT ACGAGAGAAGCACTTCGGAAGAGCGGAGCTGTTCCGCTTCTTAAGTCTTT GTCTTCGTCTGGAATGAGCACTCCTATGGTATTGATGGGGGCGAAGCAGG CGCTGAAGAACATAAACGGAGAAGCGGCAGCTTTGCTTCCGGTTGAGAAT GTTACACCGCCCGGGGATCCAGAGTGA back to top
|