Gcaud1830.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1830.t1
Unique Name	Gcaud1830.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	237

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_23_length_76035_cov_4.613123	contig	NODE_23_length_76035_cov_4.613123:54817..55527 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705672.1
PFAMs	Far-17a_AIG1
Max annot lvl	2759\|Eukaryota
Evalue	1.25e-17
EggNOG OGs	2D6GD@1\|root,2T1XM@2759\|Eukaryota
Description	FAR-17a/AIG1-like protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1830	Gcaud1830	Gracilaria caudata M_176_S67 male	gene	NODE_23_length_76035_cov_4.613123 54817..55527 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1830.t1.start1	Gcaud1830.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_23_length_76035_cov_4.613123 54817..54819 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1830.t1.CDS1	Gcaud1830.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 54817..55527 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1830.t1.exon1	Gcaud1830.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 54817..55527 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1830.t1.stop1	Gcaud1830.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_23_length_76035_cov_4.613123 55525..55527 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1830.t1	Gcaud1830.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_23_length_76035_cov_4.613123 54817..55527 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_23_length_76035_cov_4.613123:54817..55527+
coding sequence from alignment at NODE_23_length_76035_cov_4.613123:54817..55527+

mRNA sequence

>Gcaud1830.t1 ID=Gcaud1830.t1|Name=Gcaud1830.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=237bp
LAAPNFLYAQYVQLIALKAEGRTPLPAAVAFGRDSVFLTFHGNFHCTWYA
CLCLMNAVLQMGRRARSRPARAVERIVHRFTTVLFPLAAFVGLAYYLILH
FHPMNRLRALMVPDHDSKMALLHLNPLLFVLGDSLLKDADLLTKYAIKQR
RAVLFVNVYGMGYFFWTLFCTRFNGGHWPYPFQHRFSPVQHLMFVAFSLT
CATYLTRTGFRLHARLDRRRRRRYLLAEKDRSMRRL*

spliced messenger RNA

>Gcaud1830.t1 ID=Gcaud1830.t1|Name=Gcaud1830.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=711bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:54817..55527+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGCGGCTCCTAACTTTCTCTACGCTCAGTATGTACAGTTGATTGCTTT
GAAGGCTGAAGGACGTACTCCTCTTCCTGCCGCCGTTGCGTTTGGAAGGG
ACTCGGTGTTTCTCACCTTTCATGGTAACTTTCACTGCACGTGGTACGCC
TGTCTTTGTTTGATGAATGCCGTATTGCAGATGGGACGACGCGCTCGGTC
TAGGCCGGCGCGTGCGGTAGAGAGGATTGTGCATCGCTTTACCACCGTTT
TGTTTCCACTTGCGGCCTTTGTTGGACTCGCCTATTACTTAATTCTACAC
TTCCATCCCATGAATCGTCTCAGAGCGCTCATGGTGCCGGACCATGACTC
AAAGATGGCTCTGTTACATCTCAATCCGCTGCTATTCGTACTTGGCGATA
GCCTGCTAAAGGATGCGGATCTTCTCACAAAGTATGCTATCAAACAGCGC
CGCGCGGTGCTGTTTGTCAATGTTTACGGCATGGGCTACTTCTTCTGGAC
CTTGTTCTGTACAAGGTTCAATGGTGGCCACTGGCCCTATCCGTTTCAGC
ATCGCTTTTCCCCCGTGCAACATCTCATGTTTGTTGCCTTCTCTCTCACA
TGTGCTACATACCTCACGCGTACTGGTTTTCGACTTCACGCACGTCTAGA
TCGTCGACGGAGGAGACGATATTTGCTTGCGGAGAAGGATCGATCCATGC
GTCGATTGTAG

protein sequence of Gcaud1830.t1

>Gcaud1830.t1 ID=Gcaud1830.t1|Name=Gcaud1830.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=237bp
LAAPNFLYAQYVQLIALKAEGRTPLPAAVAFGRDSVFLTFHGNFHCTWYA
CLCLMNAVLQMGRRARSRPARAVERIVHRFTTVLFPLAAFVGLAYYLILH
FHPMNRLRALMVPDHDSKMALLHLNPLLFVLGDSLLKDADLLTKYAIKQR
RAVLFVNVYGMGYFFWTLFCTRFNGGHWPYPFQHRFSPVQHLMFVAFSLT
CATYLTRTGFRLHARLDRRRRRRYLLAEKDRSMRRL*

mRNA from alignment at NODE_23_length_76035_cov_4.613123:54817..55527+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1830.t1 ID=Gcaud1830.t1|Name=Gcaud1830.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=711bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:54817..55527+ (Gracilaria caudata M_176_S67 male)
CTGGCGGCTCCTAACTTTCTCTACGCTCAGTATGTACAGTTGATTGCTTT
GAAGGCTGAAGGACGTACTCCTCTTCCTGCCGCCGTTGCGTTTGGAAGGG
ACTCGGTGTTTCTCACCTTTCATGGTAACTTTCACTGCACGTGGTACGCC
TGTCTTTGTTTGATGAATGCCGTATTGCAGATGGGACGACGCGCTCGGTC
TAGGCCGGCGCGTGCGGTAGAGAGGATTGTGCATCGCTTTACCACCGTTT
TGTTTCCACTTGCGGCCTTTGTTGGACTCGCCTATTACTTAATTCTACAC
TTCCATCCCATGAATCGTCTCAGAGCGCTCATGGTGCCGGACCATGACTC
AAAGATGGCTCTGTTACATCTCAATCCGCTGCTATTCGTACTTGGCGATA
GCCTGCTAAAGGATGCGGATCTTCTCACAAAGTATGCTATCAAACAGCGC
CGCGCGGTGCTGTTTGTCAATGTTTACGGCATGGGCTACTTCTTCTGGAC
CTTGTTCTGTACAAGGTTCAATGGTGGCCACTGGCCCTATCCGTTTCAGC
ATCGCTTTTCCCCCGTGCAACATCTCATGTTTGTTGCCTTCTCTCTCACA
TGTGCTACATACCTCACGCGTACTGGTTTTCGACTTCACGCACGTCTAGA
TCGTCGACGGAGGAGACGATATTTGCTTGCGGAGAAGGATCGATCCATGC
GTCGATTGTAG

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:54817..55527+

>Gcaud1830.t1 ID=Gcaud1830.t1|Name=Gcaud1830.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=711bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:54817..55527+ (Gracilaria caudata M_176_S67 male)
CTGGCGGCTCCTAACTTTCTCTACGCTCAGTATGTACAGTTGATTGCTTT
GAAGGCTGAAGGACGTACTCCTCTTCCTGCCGCCGTTGCGTTTGGAAGGG
ACTCGGTGTTTCTCACCTTTCATGGTAACTTTCACTGCACGTGGTACGCC
TGTCTTTGTTTGATGAATGCCGTATTGCAGATGGGACGACGCGCTCGGTC
TAGGCCGGCGCGTGCGGTAGAGAGGATTGTGCATCGCTTTACCACCGTTT
TGTTTCCACTTGCGGCCTTTGTTGGACTCGCCTATTACTTAATTCTACAC
TTCCATCCCATGAATCGTCTCAGAGCGCTCATGGTGCCGGACCATGACTC
AAAGATGGCTCTGTTACATCTCAATCCGCTGCTATTCGTACTTGGCGATA
GCCTGCTAAAGGATGCGGATCTTCTCACAAAGTATGCTATCAAACAGCGC
CGCGCGGTGCTGTTTGTCAATGTTTACGGCATGGGCTACTTCTTCTGGAC
CTTGTTCTGTACAAGGTTCAATGGTGGCCACTGGCCCTATCCGTTTCAGC
ATCGCTTTTCCCCCGTGCAACATCTCATGTTTGTTGCCTTCTCTCTCACA
TGTGCTACATACCTCACGCGTACTGGTTTTCGACTTCACGCACGTCTAGA
TCGTCGACGGAGGAGACGATATTTGCTTGCGGAGAAGGATCGATCCATGC
GTCGATTGTAG