Gcaud1829.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1829.t1
Unique NameGcaud1829.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length262
Homology
BLAST of Gcaud1829.t1 vs. uniprot
Match: A0A2V3ISE1_9FLOR (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISE1_9FLOR)

HSP 1 Score: 199 bits (507), Expect = 2.230e-61
Identity = 98/163 (60.12%), Postives = 123/163 (75.46%), Query Frame = 0
Query:   45 LNDRFRFLRRDSYVVDLGSAPGGFASAMAKRIKLDDRLCVWNMRGLSEVKRSIGRRKRGKGFGKLVCVDVEDMKEINGATFIRGSIEDGDMSKRIAHALQGNEADVIVCDAAPSTTGDRERDHTRCIHTATAALSIADCVLTNGGTLVIKVFRGADEAEFVRL 207
            +N+++RFLRRDSYVVDLGSAPGGFA+A+AK +KLDDR   W+  G   VKR I  R+R + FGKLVCVDV DM EI GA+FIRGS+ D D+  RI +AL G+EADV++CDAAPSTTG+ E DH RC+  A A L +A+ VL NGG  V+KVFR   +  ++RL
Sbjct:    1 MNNKYRFLRRDSYVVDLGSAPGGFAAAVAKTVKLDDRARRWDQEGKRLVKRRITGRRRSRPFGKLVCVDVVDMAEIGGASFIRGSLMDDDVEHRIGYALNGDEADVVLCDAAPSTTGNSEMDHIRCVDMAKAGLGVANAVLRNGGVFVVKVFRVRKKRNWLRL 163          
BLAST of Gcaud1829.t1 vs. uniprot
Match: R7QN42_CHOCR (FtsJ domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN42_CHOCR)

HSP 1 Score: 199 bits (505), Expect = 1.250e-59
Identity = 107/240 (44.58%), Postives = 154/240 (64.17%), Query Frame = 0
Query:   16 WQARRAKDIYSHRAAVEGLRNRAAYKLIELNDRF-RFLRRDSYVVDLGSAPGGFASAMAKRIKLD----DRLCVWNMR-------GLSEVKRSIGRRKRGKGFGKLVCVDVEDMKEINGATFIRGSIEDGDMSKRIAHALQGNEADVIVCDAAPSTTGDRERDHTRCIHTATAALSIADCVLTNGGTLVIKVFRGADEAEFVRLLEARFVRNRAVKPKASVKQSREVYYVCERFVPRELT 243
            W+ +R  D+Y++RA  EG+R+RAAYKL E+N RF  FLR+ + VVDLG+APGGF+   +K I L     DR   WN           +++ RS+G  +  + FG+L+CVD +DM  + GA F+RG +   +  ++I +AL G EADV++ D APSTTG +E+DH + +  A  AL +AD VL NGGT   K+F G DE +F + LE+ F++ +  KP AS K S+E+YY+ + FVP  LT
Sbjct:   20 WKQQRDADVYAYRAIKEGMRSRAAYKLDEINKRFGNFLRQGAIVVDLGAAPGGFSVVASKHIHLKSITHDR---WNSIEDMDSHFAPADIARSVGGMQVRRKFGQLICVDKQDMDPVPGAVFVRGDMNTDNTYQKILYALNGKEADVVISDMAPSTTGQKEQDHFQIMQLAEEALHVADKVLRNGGTFCCKIFSGGDEVDFRKDLESSFLKVKGFKPAASRKSSKEIYYIAKGFVPAHLT 256          
BLAST of Gcaud1829.t1 vs. uniprot
Match: M2XDN1_GALSU (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XDN1_GALSU)

HSP 1 Score: 158 bits (400), Expect = 3.550e-42
Identity = 93/233 (39.91%), Postives = 137/233 (58.80%), Query Frame = 0
Query:    9 CARQLCTWQARRAKDIYSHRAAVEGLRNRAAYKLIELNDRFRFLRRDSYVVDLGSAPGGFA----------SAMAKRIKLDDRLCVWNMRGLSEVKRSIGRRKRGKGFGKLVCVDVEDMKEINGATFIRGSIEDGDMSKRIAHALQGNEADVIVCDAAPSTTGDRERDHTRCIHTATAALSIADCVLTNGGTLVIKVFRGADEAEFVRLLEARFVRNRAVKPKASVKQSREVY 231
            C      W+ +R KD+Y+  A  EGLR+RAAYKL+E+ ++F F+++ S VVDLG+APGG++          S +  ++ LD+   V  +     V RS GR  R +  G+L+ VD+ DM+ I GATFI+G   + +  +RI   L G+E DV++ D  P+T+G +E DH R I  A +A   A   L NGGT + K+F+GA E      LE  FV+ + ++PKAS  +S E Y
Sbjct:   22 CTASSSRWKIQRRKDLYAQAAYNEGLRSRAAYKLLEMMEQFHFIQQTSVVVDLGAAPGGWSLVAKQYLELCSKVPWKVPLDELASVPQV----NVMRSTGRLVR-RTRGRLISVDISDMEPIAGATFIQGDFCEQETQQRITKVLYGDEVDVVLSDMCPNTSGVKELDHERIIELAFSASHFAIHHLCNGGTFLCKIFQGAQEKRLNTFLEEHFVQVKRIRPKASKSESSECY 249          
BLAST of Gcaud1829.t1 vs. uniprot
Match: A0A5J4Z9L9_PORPP (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z9L9_PORPP)

HSP 1 Score: 138 bits (348), Expect = 8.100e-35
Identity = 90/283 (31.80%), Postives = 138/283 (48.76%), Query Frame = 0
Query:   22 KDIYSHRAAVEGLRNRAAYKLIELNDRFRFLRRDSYVVDLGSAPGGFASAMAKRIKLDDRLC---------------VW--------------------------NMRGLSEVKRS-IGRRKRG---KGFGKLVCVDVEDMKEINGATFIRGSIEDGDMSKRIAHALQGNEADVIVCDAAPSTTGDRERDHTRCIHTATAALSIADCVLTNGGTLVIKVFRGADEAEFVRLLEARFVRNRAVKPKASVKQSREVYYVCERFVPRELTDGPGLTMCQMEDATSI 259
            +D ++ RA   GLR+RAA+KL+++  +FR   + S+V++LG+APGG+   +A++I L   L                +W                             G +  K S +G  K G   +  G ++ +D  +M  I G   +   + D    +++ H L G + D IV D AP+TTG +  DH R +    +AL +A+  L   G+ V KVF+G DE  FV+ L+A F   +  KPKASV +S+E YYVC+ FVP+ L D     +C     T I
Sbjct:   99 QDYWADRARAGGLRSRAAFKLMDMQQKFRLFSKRSFVLELGAAPGGWTQVLAQQIDLRPALVEKESDLNDGNHTSRVMWLDVFFQPRLKSEDDEXXXXXXXXXXXXSLGSTSTKMSPLGNWKEGHSKRKAGVVIALDQTEMDPIPGVLHMCADMHDPATREKLDHVLMGYKLDSIVSDMAPNTTGVKVTDHVRSMELVNSALDLANYFLAPSGSFVCKVFKGEDEQAFVKRLDAHFRSVKGYKPKASVSESKEFYYVCQGFVPQRLKD-----LCASSSTTHI 376          
BLAST of Gcaud1829.t1 vs. uniprot
Match: A0A6H9HTN4_9PROT (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6H9HTN4_9PROT)

HSP 1 Score: 133 bits (334), Expect = 8.940e-35
Identity = 79/222 (35.59%), Postives = 118/222 (53.15%), Query Frame = 0
Query:   16 WQARRAKDIYSHRAAVEGLRNRAAYKLIELNDRFRFLRRDSYVVDLGSAPGGFASAMAKRIKLDDRLCVWNMRGLSEVKRSIGRRKRGKGFGKLVCVDVEDMKEINGATFIRGSIEDGDMSKRIAHALQGNEADVIVCDAAPSTTGDRERDHTRCIHTATAALSIADCVLTNGGTLVIKVFRGADEAEFVRLLEARFVRNRAVKPKASVKQSREVYYVCERF 237
            W+ R+A+D Y  RA  EG R+RAA+KL+E++DR R LRR + V+DLG+APGG++   A+R+                            G G++V VD+  M+ + G   I+G     D+  +I  AL G +AD+++ D AP+ TG+R  D  R +    A +  A   L +GGTL+ KVF+G     FV     +F   R  KP +S  +SRE+Y V   +
Sbjct:   10 WKQRQARDPYVRRARAEGWRSRAAFKLMEIDDRERLLRRGARVLDLGAAPGGWSQVAAERVG---------------------------GSGRVVAVDLLPMEPLEGVVVIQGDFLAADVQAQILEALGGGKADLVISDMAPNITGNRSVDQPRAMGLVEAVIEDAGLFLESGGTLLAKVFQGEGFEAFVAAARRKFGSVRIRKPASSRAESREMYLVAGNY 204          
BLAST of Gcaud1829.t1 vs. uniprot
Match: A0A0S7YYE5_9GAMM (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Gammaproteobacteria bacterium SG8_30 TaxID=1703404 RepID=A0A0S7YYE5_9GAMM)

HSP 1 Score: 132 bits (333), Expect = 1.410e-34
Identity = 83/222 (37.39%), Postives = 116/222 (52.25%), Query Frame = 0
Query:   16 WQARRAKDIYSHRAAVEGLRNRAAYKLIELNDRFRFLRRDSYVVDLGSAPGGFASAMAKRIKLDDRLCVWNMRGLSEVKRSIGRRKRGKGFGKLVCVDVEDMKEINGATFIRGSIEDGDMSKRIAHALQGNEADVIVCDAAPSTTGDRERDHTRCIHTATAALSIADCVLTNGGTLVIKVFRGADEAEFVRLLEARFVRNRAVKPKASVKQSREVYYVCERF 237
            W  R   D Y  RA  EG R+RA+YKL+ELN++ RFLR    VVDLG+APGG+ S +A+RI  D                           G+++  D+  M  + G TF++G   +  + +RI   L G+  DVI+ D +P+T+G    D    I+    AL +A  VL  GG  V K+F+GA   E+++ L A F +    KP AS  QSREVY V + F
Sbjct:   10 WLQRHVNDPYVQRAQKEGYRSRASYKLVELNEKDRFLRPGMRVVDLGAAPGGW-SQVARRIVGDK--------------------------GRVIATDILPMDALAGVTFVQGDFREEPVLERILDELDGDRPDVILSDMSPNTSGVSSADQAASIYLLELALDLAGRVLKPGGAFVAKMFQGAGSDEYLKALRAAFNKVSVRKPAASRPQSREVYLVAKGF 204          
BLAST of Gcaud1829.t1 vs. uniprot
Match: A0A7V7BD85_9PROT (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7V7BD85_9PROT)

HSP 1 Score: 133 bits (335), Expect = 1.580e-34
Identity = 83/231 (35.93%), Postives = 111/231 (48.05%), Query Frame = 0
Query:   16 WQARRAKDIYSHRAAVEGLRNRAAYKLIELNDRFRFLRRDSYVVDLGSAPGGFASAMAKRIKLDDRLCVWNMRGLSEVKRSIGRRKRGKGFGKLVCVDVEDMKEINGATFIRGSIEDGDMSKRIAHALQGNEADVIVCDAAPSTTGDRERDHTRCIHTATAALSIADCVLTNGGTLVIKVFRGADEAEFVRLLEARFVRNRAVKPKASVKQSREVYYVCERFVPRELTDGP 246
            W  R+  D Y  RA  EG R+RAAYKL EL+ RF+ LRR   VVDLG+APGG++   A      D   +                        +V +D  DM+ I G  F++    D D    +  AL G +AD+++ D A  TTG +  DH R +H    A   A  VL  GGT V KVF+G  E E + +L+  F   +  KP+AS  +S E Y V + F     T  P
Sbjct:   34 WLQRQLNDPYVARAKAEGYRSRAAYKLKELDQRFKLLRRGQRVVDLGAAPGGWSQVAAAATGSTDADPL------------------------VVAIDYLDMEPIAGVRFLKHDFTDADAPALLVEALGGRKADLVLSDMAAPTTGHKRTDHLRIVHLVELAADFAIQVLAPGGTFVAKVFQGGTEHELLAMLKRHFATTQHAKPRASRAESAETYLVAQGFKGTSETAAP 240          
BLAST of Gcaud1829.t1 vs. uniprot
Match: A0A562TIM5_9HYPH (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Roseibium hamelinense TaxID=150831 RepID=A0A562TIM5_9HYPH)

HSP 1 Score: 133 bits (335), Expect = 1.750e-34
Identity = 83/240 (34.58%), Postives = 117/240 (48.75%), Query Frame = 0
Query:   16 WQARRAKDIYSHRAAVEGLRNRAAYKLIELNDRFRFLRRDSYVVDLGSAPGGFASAMAKRIKLDDRLCVWNMRGLSEVKRSIGRRKRGKGFGKLVCVDVEDMKEINGATFIRGSIEDGDMSKRIAHALQGNEADVIVCDAAPSTTGDRERDHTRCIHTATAALSIADCVLTNGGTLVIKVFRGADEAEFVRLLEARFVRNRAVKPKASVKQSREVYYVCERFVPRELTDGPGLTMCQMED 255
            W  R+  D Y  RA ++G R+RAAYKL+E++D++  L+    VVDLG+APGG+      ++K                              K+V +D  DM  I G  F++    D D    +  AL G   D+++ D A  TTG R+ DH R  H    A+  A   L  GG  + KVFRG  E E +R L++ F     +KP AS K+S E+Y + + F  R  TDGP     QM+D
Sbjct:   30 WLQRQLNDPYVRRAKIDGYRSRAAYKLLEIDDKYNLLKPGYRVVDLGAAPGGWCQVAVDKVKSKPEA------------------------PKVVGIDYLDMDHIPGVAFLKKDFLDDDAPDALIEALGGQGPDLVLSDMAAPTTGHRQTDHLRTTHLFEVAIDFARQNLVPGGAFLAKVFRGGTENELLRALKSDFKTVAHIKPPASRKESPELYVIAKGFRGRAETDGPH----QMDD 241          
BLAST of Gcaud1829.t1 vs. uniprot
Match: A0A6P1YQ56_9HYPH (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Ancylobacter pratisalsi TaxID=1745854 RepID=A0A6P1YQ56_9HYPH)

HSP 1 Score: 133 bits (334), Expect = 2.340e-34
Identity = 84/233 (36.05%), Postives = 117/233 (50.21%), Query Frame = 0
Query:   16 WQARRAKDIYSHRAAVEGLRNRAAYKLIELNDRFRFLRRDSYVVDLGSAPGGFASAMAKRIKLDDRLCVWNMRGLSEVKRSIGRRKRGKGFGKLVCVDVEDMKEINGATFIRGSIEDGDMSKRIAHALQGNEADVIVCDAAPSTTGDRERDHTRCIHTATAALSIADCVLTNGGTLVIKVFRGADEAEFVRLLEARFVRNRAVKPKASVKQSREVYYVCERFVPRELTDGPGL 248
            W  R+  D Y  RA  EG R+RAA+KLIE++D+ +FL+  + VVDLG+APGG++   AKRIK +D                        G G +V +D+ ++  + G  F++      D   R+   L G EADV++ D A +TTG R  DH R +     A+  A  VL  GG  V KVF+G  E   +  L+  F   + VKP+AS   S E+Y V   F  R    G  L
Sbjct:   33 WLQRQLNDPYVARAKREGWRSRAAFKLIEIDDKMKFLKPGARVVDLGAAPGGWSQVAAKRIKAED------------------------GGGHVVAIDLLEIDPVTGVDFVQMDFLADDAPDRLKEML-GGEADVVMSDMAANTTGHRATDHLRIVGLVELAIDFAGQVLAPGGAFVAKVFQGGTEGSLLAELKRNFATVKHVKPQASRADSAELYVVAMGFRGRSSVSGDDL 240          
BLAST of Gcaud1829.t1 vs. uniprot
Match: A0A847ZSC8_9HYPH (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZSC8_9HYPH)

HSP 1 Score: 132 bits (332), Expect = 3.480e-34
Identity = 80/222 (36.04%), Postives = 113/222 (50.90%), Query Frame = 0
Query:   16 WQARRAKDIYSHRAAVEGLRNRAAYKLIELNDRFRFLRRDSYVVDLGSAPGGFASAMAKRIKLDDRLCVWNMRGLSEVKRSIGRRKRGKGFGKLVCVDVEDMKEINGATFIRGSIEDGDMSKRIAHALQGNEADVIVCDAAPSTTGDRERDHTRCIHTATAALSIADCVLTNGGTLVIKVFRGADEAEFVRLLEARFVRNRAVKPKASVKQSREVYYVCERF 237
            W  R+  D Y H A   G R+RAA+KL E++D+++FL+    VVDLG+APGG++   A+R+K  D                        G GK+V +D+  M EI+G TF +    D D    +  AL G +ADV++ D A   TG R+ DH   I    A    A  VL  GGT + KV RG  E++ + L++  F   R VKP AS   S E++ +   F
Sbjct:   32 WLERQLNDPYVHEAKKLGYRSRAAFKLSEIDDKYKFLKVGGRVVDLGAAPGGWSQVSAQRVKSVD------------------------GKGKVVAIDMHSMDEISGVTFFKKDFYDEDAPDVLIAALGGEKADVVLSDMASHATGHRQTDHINIIALVEAGYDFARQVLKPGGTYLAKVLRGGTESQLLTLMKKDFATVRHVKPMASRDDSAELFVLATGF 229          
The following BLAST results are available for this feature:
BLAST of Gcaud1829.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ISE1_9FLOR2.230e-6160.12Ribosomal RNA large subunit methyltransferase E n=... [more]
R7QN42_CHOCR1.250e-5944.58FtsJ domain-containing protein n=1 Tax=Chondrus cr... [more]
M2XDN1_GALSU3.550e-4239.91Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A5J4Z9L9_PORPP8.100e-3531.80Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A6H9HTN4_9PROT8.940e-3535.59Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A0S7YYE5_9GAMM1.410e-3437.39Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A7V7BD85_9PROT1.580e-3435.93Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A562TIM5_9HYPH1.750e-3434.58Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A6P1YQ56_9HYPH2.340e-3436.05Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A847ZSC8_9HYPH3.480e-3436.04Ribosomal RNA large subunit methyltransferase E n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002877Ribosomal RNA methyltransferase FtsJ domainPFAMPF01728FtsJcoord: 35..237
e-value: 3.4E-44
score: 151.1
NoneNo IPR availableGENE3D3.40.50.150Vaccinia Virus protein VP39coord: 34..243
e-value: 5.6E-51
score: 175.1
NoneNo IPR availablePIRSRPIRSR005461-1PIRSR005461-1coord: 14..237
e-value: 9.6E-58
score: 193.1
NoneNo IPR availablePANTHERPTHR10920RIBOSOMAL RNA METHYLTRANSFERASEcoord: 21..241
IPR015507Ribosomal RNA large subunit methyltransferase EPIRSFPIRSF00546123S_rRNA_mtasecoord: 2..246
e-value: 2.5E-59
score: 198.3
IPR015507Ribosomal RNA large subunit methyltransferase EHAMAPMF_01547RNA_methyltr_Ecoord: 18..238
score: 24.893021
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 34..238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_23_length_76035_cov_4.613123contigNODE_23_length_76035_cov_4.613123:53627..54483 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1829.t1Gcaud1829.t1Gracilaria caudata M_176_S67 malemRNANODE_23_length_76035_cov_4.613123 53627..54483 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1829.t1 ID=Gcaud1829.t1|Name=Gcaud1829.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=262bp
MSTSAVTSCARQLCTWQARRAKDIYSHRAAVEGLRNRAAYKLIELNDRFR
FLRRDSYVVDLGSAPGGFASAMAKRIKLDDRLCVWNMRGLSEVKRSIGRR
KRGKGFGKLVCVDVEDMKEINGATFIRGSIEDGDMSKRIAHALQGNEADV
IVCDAAPSTTGDRERDHTRCIHTATAALSIADCVLTNGGTLVIKVFRGAD
EAEFVRLLEARFVRNRAVKPKASVKQSREVYYVCERFVPRELTDGPGLTM
CQMEDATSIAK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002877rRNA_MeTrfase_FtsJ_dom
IPR015507rRNA-MeTfrase_E
IPR029063SAM-dependent_MTases