Gcaud1828.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1828.t1
Unique Name	Gcaud1828.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	463

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_23_length_76035_cov_4.613123	contig	NODE_23_length_76035_cov_4.613123:50949..52337 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	281687.CJA01804
Preferred name	PRPF4
PFAMs	PRP4,WD40
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K12662
KEGG Pathway	ko03040,map03040
KEGG Module	M00354
GOs	GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015030,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0017069,GO:0017070,GO:0030532,GO:0030621,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046540,GO:0070013,GO:0071001,GO:0071005,GO:0071011,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Evalue	4.25e-27
EggNOG OGs	KOG0272@1\|root,KOG0272@2759\|Eukaryota,38CDE@33154\|Opisthokonta,3BA7B@33208\|Metazoa,3CSQW@33213\|Bilateria,40B0V@6231\|Nematoda,1KTVP@119089\|Chromadorea,40S1Q@6236\|Rhabditida
Description	pre-mRNA processing factor 4 (PRP4) like
COG category	A
BRITE	ko00000,ko00001,ko00002,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1828	Gcaud1828	Gracilaria caudata M_176_S67 male	gene	NODE_23_length_76035_cov_4.613123 50949..52337 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1828.t1.stop1	Gcaud1828.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_23_length_76035_cov_4.613123 50949..50951 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1828.t1.CDS1	Gcaud1828.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 50949..52337 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1828.t1.exon1	Gcaud1828.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 50949..52337 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1828.t1.start1	Gcaud1828.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_23_length_76035_cov_4.613123 52335..52337 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1828.t1	Gcaud1828.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_23_length_76035_cov_4.613123 50949..52337 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_23_length_76035_cov_4.613123:50949..52337-
coding sequence from alignment at NODE_23_length_76035_cov_4.613123:50949..52337-

mRNA sequence

>Gcaud1828.t1 ID=Gcaud1828.t1|Name=Gcaud1828.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=463bp
MDLEILPNTALESARAEHAQKLKQLQQRRIARSISLPTDDQQVKLALRSR
GHPICLFGEDAYDRRERLRAVMAEAGVTSLAQPQNENAVVAQKQDARREE
FYTEGTQQLRDLRVQVAHASLKAAAKRLENERNKTHTIKRWERDELETMH
RVRESALIASQGGGVRPFTAICYCETADGDLIVTGDWGGNVAVWKEHEDG
ISQLSCAAFHQERVSITRFYKGILTTAAADSFAVVSEYREGKFVQTVKLA
GHNGRVADVRVNPVRTSLVATAGFDGDVRLFDRGKPLLQQETGHDVVYRL
AFHEDGSLLGTAGFDGGIRLWDMRSGRAVMTFESAHVGDVTALEFCGGMP
WISSSGKDNCVRVWDVRKKRCVRTIAAHAKMVSALAIDRGFVMFSAGFDR
CVKAWALHRACGLVACWSGFDDKIMALDCSGDGSRVVAACYDKTWRVWGC
ERRAGGAVALQI*

spliced messenger RNA

>Gcaud1828.t1 ID=Gcaud1828.t1|Name=Gcaud1828.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:50949..52337- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTTGGAGATTTTGCCGAACACGGCGTTGGAGTCCGCCCGAGCAGA
GCACGCGCAAAAACTGAAGCAACTTCAACAACGTCGCATCGCTCGTAGTA
TATCATTACCCACAGATGATCAACAGGTCAAACTTGCGTTGCGGAGCAGG
GGGCATCCAATATGTCTCTTTGGCGAGGATGCATACGATCGTCGAGAACG
ACTGCGAGCTGTTATGGCTGAAGCTGGCGTCACAAGCTTAGCACAACCGC
AAAACGAGAATGCTGTCGTCGCACAAAAACAAGATGCTAGAAGGGAGGAA
TTCTATACTGAGGGTACGCAGCAGTTGAGAGATTTGAGAGTCCAAGTTGC
TCATGCCTCGCTTAAAGCTGCGGCGAAGAGGCTTGAAAACGAAAGAAACA
AGACTCACACAATAAAGCGATGGGAACGCGATGAGTTAGAAACAATGCAC
CGCGTTAGAGAAAGTGCTCTCATTGCTTCGCAGGGGGGTGGCGTGCGTCC
CTTCACTGCCATTTGCTATTGCGAGACTGCCGATGGTGATTTGATCGTCA
CGGGCGATTGGGGCGGTAACGTTGCAGTTTGGAAGGAGCACGAAGATGGT
ATCTCTCAGCTTTCCTGCGCTGCCTTCCACCAAGAACGTGTGTCCATCAC
TCGCTTCTACAAAGGTATCTTGACCACTGCCGCTGCAGATTCTTTCGCCG
TTGTCAGCGAATACCGTGAAGGAAAGTTTGTGCAAACGGTGAAACTGGCA
GGACATAACGGGCGCGTGGCAGACGTGAGAGTGAATCCAGTGCGCACTTC
TCTCGTGGCTACTGCGGGATTTGATGGCGATGTACGACTCTTCGACCGCG
GAAAACCATTACTGCAGCAGGAGACCGGTCACGACGTGGTGTACAGACTG
GCCTTTCACGAGGATGGCAGTTTGTTAGGTACGGCCGGTTTCGACGGCGG
CATACGATTGTGGGACATGCGGTCGGGACGCGCCGTCATGACGTTCGAAA
GCGCCCATGTTGGCGACGTCACTGCGCTGGAATTCTGCGGCGGCATGCCG
TGGATAAGCAGCTCAGGCAAGGACAACTGCGTGCGCGTATGGGACGTTCG
CAAGAAACGGTGCGTCAGAACGATAGCGGCACACGCCAAGATGGTGTCTG
CGCTGGCAATCGATCGAGGATTCGTCATGTTCTCGGCAGGCTTCGACCGT
TGCGTCAAGGCGTGGGCTCTTCATCGCGCGTGCGGATTGGTGGCGTGTTG
GTCGGGCTTCGACGATAAGATCATGGCGCTGGATTGCAGTGGAGATGGCA
GCCGCGTCGTGGCGGCGTGCTACGATAAGACTTGGCGGGTGTGGGGATGC
GAGCGACGTGCTGGTGGCGCGGTCGCGCTACAAATATGA

protein sequence of Gcaud1828.t1

>Gcaud1828.t1 ID=Gcaud1828.t1|Name=Gcaud1828.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=463bp
MDLEILPNTALESARAEHAQKLKQLQQRRIARSISLPTDDQQVKLALRSR
GHPICLFGEDAYDRRERLRAVMAEAGVTSLAQPQNENAVVAQKQDARREE
FYTEGTQQLRDLRVQVAHASLKAAAKRLENERNKTHTIKRWERDELETMH
RVRESALIASQGGGVRPFTAICYCETADGDLIVTGDWGGNVAVWKEHEDG
ISQLSCAAFHQERVSITRFYKGILTTAAADSFAVVSEYREGKFVQTVKLA
GHNGRVADVRVNPVRTSLVATAGFDGDVRLFDRGKPLLQQETGHDVVYRL
AFHEDGSLLGTAGFDGGIRLWDMRSGRAVMTFESAHVGDVTALEFCGGMP
WISSSGKDNCVRVWDVRKKRCVRTIAAHAKMVSALAIDRGFVMFSAGFDR
CVKAWALHRACGLVACWSGFDDKIMALDCSGDGSRVVAACYDKTWRVWGC
ERRAGGAVALQI*

mRNA from alignment at NODE_23_length_76035_cov_4.613123:50949..52337-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1828.t1 ID=Gcaud1828.t1|Name=Gcaud1828.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:50949..52337- (Gracilaria caudata M_176_S67 male)
ATGGACTTGGAGATTTTGCCGAACACGGCGTTGGAGTCCGCCCGAGCAGA
GCACGCGCAAAAACTGAAGCAACTTCAACAACGTCGCATCGCTCGTAGTA
TATCATTACCCACAGATGATCAACAGGTCAAACTTGCGTTGCGGAGCAGG
GGGCATCCAATATGTCTCTTTGGCGAGGATGCATACGATCGTCGAGAACG
ACTGCGAGCTGTTATGGCTGAAGCTGGCGTCACAAGCTTAGCACAACCGC
AAAACGAGAATGCTGTCGTCGCACAAAAACAAGATGCTAGAAGGGAGGAA
TTCTATACTGAGGGTACGCAGCAGTTGAGAGATTTGAGAGTCCAAGTTGC
TCATGCCTCGCTTAAAGCTGCGGCGAAGAGGCTTGAAAACGAAAGAAACA
AGACTCACACAATAAAGCGATGGGAACGCGATGAGTTAGAAACAATGCAC
CGCGTTAGAGAAAGTGCTCTCATTGCTTCGCAGGGGGGTGGCGTGCGTCC
CTTCACTGCCATTTGCTATTGCGAGACTGCCGATGGTGATTTGATCGTCA
CGGGCGATTGGGGCGGTAACGTTGCAGTTTGGAAGGAGCACGAAGATGGT
ATCTCTCAGCTTTCCTGCGCTGCCTTCCACCAAGAACGTGTGTCCATCAC
TCGCTTCTACAAAGGTATCTTGACCACTGCCGCTGCAGATTCTTTCGCCG
TTGTCAGCGAATACCGTGAAGGAAAGTTTGTGCAAACGGTGAAACTGGCA
GGACATAACGGGCGCGTGGCAGACGTGAGAGTGAATCCAGTGCGCACTTC
TCTCGTGGCTACTGCGGGATTTGATGGCGATGTACGACTCTTCGACCGCG
GAAAACCATTACTGCAGCAGGAGACCGGTCACGACGTGGTGTACAGACTG
GCCTTTCACGAGGATGGCAGTTTGTTAGGTACGGCCGGTTTCGACGGCGG
CATACGATTGTGGGACATGCGGTCGGGACGCGCCGTCATGACGTTCGAAA
GCGCCCATGTTGGCGACGTCACTGCGCTGGAATTCTGCGGCGGCATGCCG
TGGATAAGCAGCTCAGGCAAGGACAACTGCGTGCGCGTATGGGACGTTCG
CAAGAAACGGTGCGTCAGAACGATAGCGGCACACGCCAAGATGGTGTCTG
CGCTGGCAATCGATCGAGGATTCGTCATGTTCTCGGCAGGCTTCGACCGT
TGCGTCAAGGCGTGGGCTCTTCATCGCGCGTGCGGATTGGTGGCGTGTTG
GTCGGGCTTCGACGATAAGATCATGGCGCTGGATTGCAGTGGAGATGGCA
GCCGCGTCGTGGCGGCGTGCTACGATAAGACTTGGCGGGTGTGGGGATGC
GAGCGACGTGCTGGTGGCGCGGTCGCGCTACAAATATGA

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:50949..52337-

>Gcaud1828.t1 ID=Gcaud1828.t1|Name=Gcaud1828.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1389bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:50949..52337- (Gracilaria caudata M_176_S67 male)
ATGGACTTGGAGATTTTGCCGAACACGGCGTTGGAGTCCGCCCGAGCAGA
GCACGCGCAAAAACTGAAGCAACTTCAACAACGTCGCATCGCTCGTAGTA
TATCATTACCCACAGATGATCAACAGGTCAAACTTGCGTTGCGGAGCAGG
GGGCATCCAATATGTCTCTTTGGCGAGGATGCATACGATCGTCGAGAACG
ACTGCGAGCTGTTATGGCTGAAGCTGGCGTCACAAGCTTAGCACAACCGC
AAAACGAGAATGCTGTCGTCGCACAAAAACAAGATGCTAGAAGGGAGGAA
TTCTATACTGAGGGTACGCAGCAGTTGAGAGATTTGAGAGTCCAAGTTGC
TCATGCCTCGCTTAAAGCTGCGGCGAAGAGGCTTGAAAACGAAAGAAACA
AGACTCACACAATAAAGCGATGGGAACGCGATGAGTTAGAAACAATGCAC
CGCGTTAGAGAAAGTGCTCTCATTGCTTCGCAGGGGGGTGGCGTGCGTCC
CTTCACTGCCATTTGCTATTGCGAGACTGCCGATGGTGATTTGATCGTCA
CGGGCGATTGGGGCGGTAACGTTGCAGTTTGGAAGGAGCACGAAGATGGT
ATCTCTCAGCTTTCCTGCGCTGCCTTCCACCAAGAACGTGTGTCCATCAC
TCGCTTCTACAAAGGTATCTTGACCACTGCCGCTGCAGATTCTTTCGCCG
TTGTCAGCGAATACCGTGAAGGAAAGTTTGTGCAAACGGTGAAACTGGCA
GGACATAACGGGCGCGTGGCAGACGTGAGAGTGAATCCAGTGCGCACTTC
TCTCGTGGCTACTGCGGGATTTGATGGCGATGTACGACTCTTCGACCGCG
GAAAACCATTACTGCAGCAGGAGACCGGTCACGACGTGGTGTACAGACTG
GCCTTTCACGAGGATGGCAGTTTGTTAGGTACGGCCGGTTTCGACGGCGG
CATACGATTGTGGGACATGCGGTCGGGACGCGCCGTCATGACGTTCGAAA
GCGCCCATGTTGGCGACGTCACTGCGCTGGAATTCTGCGGCGGCATGCCG
TGGATAAGCAGCTCAGGCAAGGACAACTGCGTGCGCGTATGGGACGTTCG
CAAGAAACGGTGCGTCAGAACGATAGCGGCACACGCCAAGATGGTGTCTG
CGCTGGCAATCGATCGAGGATTCGTCATGTTCTCGGCAGGCTTCGACCGT
TGCGTCAAGGCGTGGGCTCTTCATCGCGCGTGCGGATTGGTGGCGTGTTG
GTCGGGCTTCGACGATAAGATCATGGCGCTGGATTGCAGTGGAGATGGCA
GCCGCGTCGTGGCGGCGTGCTACGATAAGACTTGGCGGGTGTGGGGATGC
GAGCGACGTGCTGGTGGCGCGGTCGCGCTACAAATATGA