|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 45157.CMO270CT |
| PFAMs | DNA_pol_A,DNA_pol_A_exo1 |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC02795 |
| KEGG ko | ko:K02335 |
| KEGG Reaction | R00375,R00376,R00377,R00378 |
| KEGG Pathway | ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440 |
| GOs | GO:0000002,GO:0003674,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009657,GO:0009987,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0032042,GO:0033258,GO:0033259,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576 |
| Evalue | 5.06e-209 |
| EggNOG OGs | COG0749@1|root,KOG0950@2759|Eukaryota |
| EC | 2.7.7.7 |
| Description | plastid DNA replication |
| COG category | L |
| BRITE | ko00000,ko00001,ko01000,ko03032,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1820.t2.stop1 | Gcaud1820.t2.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_23_length_76035_cov_4.613123 30070..30072 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1820.t2.start1 | Gcaud1820.t2.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_23_length_76035_cov_4.613123 32428..32430 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1820.t2 ID=Gcaud1820.t2|Name=Gcaud1820.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=787bp MPWLSLPLRVGARLPSRRLTHTQSAAAALPALQPRCNGYDLPRASPVPEH VTVVQDIRAASKVVSKLFTLPHDTLVAWDTETTGVDPSKQSPVGNGRVLC ATAYAGHHVDFGTGPRLFVDCVKPGVLHALRPYFESENRPKVWHNYSFDK HVLGNHGITARGFAGDTMHMARLVDSSLQKYSLEQLCKHFLESDMRKVTM SERFGLLEGKKAALNTLGIHNNEELRDEWIDYASMDAELTHRLCHRLKNE LQNMNIHGSNSVPEIVHRYRNLFELYAGLFVPFGELLTEMESDGFKVDTD WLREAAVHARGEQLAYEDKFRNWAQKHSPDAKYMNVHSDLQKQQLFFAPC TNKFDKKETMPRRKSFNLELTGELKERYLNRLQNSASREEQELYKMYSGP DAKKKVKCDVVLEGLGKKPDEYTVKGWPSVSARALKKLAKKMSKRDDSDD NELSAAIEDLINATSVSSLMSSFILPLQQWPGKDGRIHASLNLNTETGRL SSRRPNLQNQPALEKDRYKIRKAFVPENGKSLIVADYGQLELRLLAHITN CKSMIEAFKAGGDFHSRTALTMFDNVKAAISQGKCILEREVGNKPARDLP LLKDMFPTERRKAKTLNFSIAYGKTIVGLARDWNTSEEEAAETLNLWYKE RQEVRIWQRECKKFLQKHHFVETILGRRRHLPDIVSVKPHERFHAQRAAI NAPLQGSAADLVMGAMLKLHRDRVLRTLGWKVILQVHDEIILEGPEESAD IALPIVVDKMKNPVDVDLRVDLTVDAKCAKSWYEAK* back to topspliced messenger RNA >Gcaud1820.t2 ID=Gcaud1820.t2|Name=Gcaud1820.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2361bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:30070..32430- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCGTGGCTTTCGCTTCCACTTCGCGTTGGAGCCCGTCTGCCCTCTCG CCGCCTTACCCACACCCAGTCCGCCGCCGCCGCGCTCCCTGCACTGCAGC CTCGATGTAATGGGTATGACCTGCCACGCGCGTCACCAGTCCCCGAGCAT GTGACCGTTGTGCAAGATATCCGGGCAGCCTCCAAAGTTGTCTCAAAACT GTTCACGCTTCCCCATGATACTCTTGTAGCATGGGACACTGAGACCACCG GGGTTGATCCATCGAAGCAATCTCCTGTTGGAAATGGACGTGTTTTATGT GCCACAGCGTATGCAGGCCATCATGTTGATTTTGGAACGGGGCCGAGACT ATTTGTAGATTGTGTAAAACCGGGCGTGTTACATGCATTACGTCCTTATT TTGAGAGTGAGAACAGACCAAAAGTGTGGCACAACTACTCCTTTGATAAA CATGTTCTGGGAAATCACGGGATTACTGCTCGTGGGTTTGCCGGCGACAC AATGCATATGGCGAGACTTGTCGACTCCTCACTGCAAAAGTATTCATTGG AACAGCTGTGCAAACATTTCCTGGAATCGGACATGCGAAAGGTCACGATG TCCGAACGTTTTGGTCTCTTGGAAGGGAAGAAGGCCGCACTGAACACTCT CGGCATACACAACAATGAAGAGCTGAGAGATGAATGGATTGACTATGCAT CCATGGATGCAGAACTCACACACCGCTTGTGTCATCGTCTGAAGAACGAG CTTCAGAACATGAACATTCATGGTAGCAACAGTGTGCCAGAAATTGTACA TCGATATAGGAATCTTTTTGAACTATACGCAGGCCTTTTCGTTCCCTTTG GCGAGCTCCTCACAGAAATGGAAAGTGATGGGTTCAAGGTTGACACTGAC TGGTTGAGAGAGGCTGCCGTTCATGCGCGGGGTGAACAACTAGCGTACGA GGACAAGTTCAGAAATTGGGCGCAAAAGCATTCTCCTGATGCGAAGTATA TGAACGTTCATTCTGACCTTCAGAAGCAGCAGCTTTTCTTTGCCCCATGT ACAAACAAATTTGACAAGAAGGAAACCATGCCTCGTCGAAAATCTTTCAA TTTGGAGCTGACTGGGGAACTGAAAGAAAGATATTTGAACCGGCTCCAGA ATAGTGCGTCTCGGGAGGAGCAAGAACTGTACAAGATGTATTCTGGACCC GACGCAAAGAAAAAAGTGAAGTGTGATGTTGTCCTGGAAGGCCTAGGAAA GAAGCCGGACGAATATACTGTGAAGGGATGGCCAAGCGTTTCCGCGAGGG CCTTGAAGAAATTGGCAAAGAAGATGTCAAAGAGAGATGACAGCGATGAC AACGAATTGAGCGCCGCAATTGAAGATCTGATCAATGCCACTTCAGTTTC AAGCCTAATGTCAAGCTTTATACTTCCTCTTCAACAATGGCCGGGAAAGG ATGGACGAATTCACGCGTCTCTAAACTTGAACACCGAGACTGGACGACTC TCCTCACGGCGACCGAATCTACAGAATCAGCCCGCCTTGGAAAAGGATCG GTATAAAATTCGGAAAGCATTTGTCCCGGAGAACGGGAAATCTCTAATTG TCGCTGACTATGGACAACTTGAGTTGCGTTTGTTAGCTCACATCACAAAC TGCAAATCTATGATTGAAGCCTTTAAGGCCGGAGGAGATTTTCATTCTCG AACTGCATTAACCATGTTTGATAATGTGAAAGCAGCAATTTCGCAAGGGA AGTGTATCCTCGAACGGGAAGTAGGTAACAAACCAGCCAGGGACTTGCCT CTTCTAAAAGATATGTTTCCTACCGAAAGAAGAAAAGCGAAGACATTAAA TTTTTCAATTGCCTATGGAAAAACAATTGTTGGCCTTGCTCGAGACTGGA ACACAAGTGAAGAGGAAGCAGCTGAAACATTGAACTTGTGGTACAAAGAG CGTCAGGAGGTAAGAATATGGCAGCGGGAGTGCAAGAAGTTCCTCCAGAA GCACCATTTTGTTGAAACTATACTCGGCAGAAGAAGGCATTTACCTGACA TAGTTTCCGTGAAACCACACGAGAGATTCCACGCACAACGAGCAGCAATA AATGCCCCTCTTCAAGGATCTGCGGCCGATCTGGTTATGGGTGCGATGCT TAAACTGCATAGAGATCGAGTTCTGAGAACTTTGGGTTGGAAGGTAATTC TACAAGTTCACGACGAAATCATTCTTGAAGGTCCAGAAGAGTCGGCTGAC ATCGCCTTGCCAATCGTAGTGGATAAAATGAAGAATCCTGTTGACGTTGA CCTTCGTGTCGATTTGACTGTGGATGCGAAGTGTGCAAAATCTTGGTACG AAGCGAAATGA back to topprotein sequence of Gcaud1820.t2 >Gcaud1820.t2 ID=Gcaud1820.t2|Name=Gcaud1820.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=787bp
MPWLSLPLRVGARLPSRRLTHTQSAAAALPALQPRCNGYDLPRASPVPEH VTVVQDIRAASKVVSKLFTLPHDTLVAWDTETTGVDPSKQSPVGNGRVLC ATAYAGHHVDFGTGPRLFVDCVKPGVLHALRPYFESENRPKVWHNYSFDK HVLGNHGITARGFAGDTMHMARLVDSSLQKYSLEQLCKHFLESDMRKVTM SERFGLLEGKKAALNTLGIHNNEELRDEWIDYASMDAELTHRLCHRLKNE LQNMNIHGSNSVPEIVHRYRNLFELYAGLFVPFGELLTEMESDGFKVDTD WLREAAVHARGEQLAYEDKFRNWAQKHSPDAKYMNVHSDLQKQQLFFAPC TNKFDKKETMPRRKSFNLELTGELKERYLNRLQNSASREEQELYKMYSGP DAKKKVKCDVVLEGLGKKPDEYTVKGWPSVSARALKKLAKKMSKRDDSDD NELSAAIEDLINATSVSSLMSSFILPLQQWPGKDGRIHASLNLNTETGRL SSRRPNLQNQPALEKDRYKIRKAFVPENGKSLIVADYGQLELRLLAHITN CKSMIEAFKAGGDFHSRTALTMFDNVKAAISQGKCILEREVGNKPARDLP LLKDMFPTERRKAKTLNFSIAYGKTIVGLARDWNTSEEEAAETLNLWYKE RQEVRIWQRECKKFLQKHHFVETILGRRRHLPDIVSVKPHERFHAQRAAI NAPLQGSAADLVMGAMLKLHRDRVLRTLGWKVILQVHDEIILEGPEESAD IALPIVVDKMKNPVDVDLRVDLTVDAKCAKSWYEAK* back to topmRNA from alignment at NODE_23_length_76035_cov_4.613123:30070..32430- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1820.t2 ID=Gcaud1820.t2|Name=Gcaud1820.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2361bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:30070..32430- (Gracilaria caudata M_176_S67 male) ATGCCGTGGCTTTCGCTTCCACTTCGCGTTGGAGCCCGTCTGCCCTCTCG
CCGCCTTACCCACACCCAGTCCGCCGCCGCCGCGCTCCCTGCACTGCAGC
CTCGATGTAATGGGTATGACCTGCCACGCGCGTCACCAGTCCCCGAGCAT
GTGACCGTTGTGCAAGATATCCGGGCAGCCTCCAAAGTTGTCTCAAAACT
GTTCACGCTTCCCCATGATACTCTTGTAGCATGGGACACTGAGACCACCG
GGGTTGATCCATCGAAGCAATCTCCTGTTGGAAATGGACGTGTTTTATGT
GCCACAGCGTATGCAGGCCATCATGTTGATTTTGGAACGGGGCCGAGACT
ATTTGTAGATTGTGTAAAACCGGGCGTGTTACATGCATTACGTCCTTATT
TTGAGAGTGAGAACAGACCAAAAGTGTGGCACAACTACTCCTTTGATAAA
CATGTTCTGGGAAATCACGGGATTACTGCTCGTGGGTTTGCCGGCGACAC
AATGCATATGGCGAGACTTGTCGACTCCTCACTGCAAAAGTATTCATTGG
AACAGCTGTGCAAACATTTCCTGGAATCGGACATGCGAAAGGTCACGATG
TCCGAACGTTTTGGTCTCTTGGAAGGGAAGAAGGCCGCACTGAACACTCT
CGGCATACACAACAATGAAGAGCTGAGAGATGAATGGATTGACTATGCAT
CCATGGATGCAGAACTCACACACCGCTTGTGTCATCGTCTGAAGAACGAG
CTTCAGAACATGAACATTCATGGTAGCAACAGTGTGCCAGAAATTGTACA
TCGATATAGGAATCTTTTTGAACTATACGCAGGCCTTTTCGTTCCCTTTG
GCGAGCTCCTCACAGAAATGGAAAGTGATGGGTTCAAGGTTGACACTGAC
TGGTTGAGAGAGGCTGCCGTTCATGCGCGGGGTGAACAACTAGCGTACGA
GGACAAGTTCAGAAATTGGGCGCAAAAGCATTCTCCTGATGCGAAGTATA
TGAACGTTCATTCTGACCTTCAGAAGCAGCAGCTTTTCTTTGCCCCATGT
ACAAACAAATTTGACAAGAAGGAAACCATGCCTCGTCGAAAATCTTTCAA
TTTGGAGCTGACTGGGGAACTGAAAGAAAGATATTTGAACCGGCTCCAGA
ATAGTGCGTCTCGGGAGGAGCAAGAACTGTACAAGATGTATTCTGGACCC
GACGCAAAGAAAAAAGTGAAGTGTGATGTTGTCCTGGAAGGCCTAGGAAA
GAAGCCGGACGAATATACTGTGAAGGGATGGCCAAGCGTTTCCGCGAGGG
CCTTGAAGAAATTGGCAAAGAAGATGTCAAAGAGAGATGACAGCGATGAC
AACGAATTGAGCGCCGCAATTGAAGATCTGATCAATGCCACTTCAGTTTC
AAGCCTAATGTCAAGCTTTATACTTCCTCTTCAACAATGGCCGGGAAAGG
ATGGACGAATTCACGCGTCTCTAAACTTGAACACCGAGACTGGACGACTC
TCCTCACGGCGACCGAATCTACAGAATCAGCCCGCCTTGGAAAAGGATCG
GTATAAAATTCGGAAAGCATTTGTCCCGGAGAACGGGAAATCTCTAATTG
TCGCTGACTATGGACAACTTGAGTTGCGTTTGTTAGCTCACATCACAAAC
TGCAAATCTATGATTGAAGCCTTTAAGGCCGGAGGAGATTTTCATTCTCG
AACTGCATTAACCATGTTTGATAATGTGAAAGCAGCAATTTCGCAAGGGA
AGTGTATCCTCGAACGGGAAGTAGGTAACAAACCAGCCAGGGACTTGCCT
CTTCTAAAAGATATGTTTCCTACCGAAAGAAGAAAAGCGAAGACATTAAA
TTTTTCAATTGCCTATGGAAAAACAATTGTTGGCCTTGCTCGAGACTGGA
ACACAAGTGAAGAGGAAGCAGCTGAAACATTGAACTTGTGGTACAAAGAG
CGTCAGGAGGTAAGAATATGGCAGCGGGAGTGCAAGAAGTTCCTCCAGAA
GCACCATTTTGTTGAAACTATACTCGGCAGAAGAAGGCATTTACCTGACA
TAGTTTCCGTGAAACCACACGAGAGATTCCACGCACAACGAGCAGCAATA
AATGCCCCTCTTCAAGGATCTGCGGCCGATCTGGTTATGGGTGCGATGCT
TAAACTGCATAGAGATCGAGTTCTGAGAACTTTGGGTTGGAAGGTAATTC
TACAAGTTCACGACGAAATCATTCTTGAAGGTCCAGAAGAGTCGGCTGAC
ATCGCCTTGCCAATCGTAGTGGATAAAATGAAGAATCCTGTTGACGTTGA
CCTTCGTGTCGATTTGACTGTGGATGCGAAGTGTGCAAAATCTTGGTACG
AAGCGAAATGA back to topCoding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:30070..32430- >Gcaud1820.t2 ID=Gcaud1820.t2|Name=Gcaud1820.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2361bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:30070..32430- (Gracilaria caudata M_176_S67 male) ATGCCGTGGCTTTCGCTTCCACTTCGCGTTGGAGCCCGTCTGCCCTCTCG CCGCCTTACCCACACCCAGTCCGCCGCCGCCGCGCTCCCTGCACTGCAGC CTCGATGTAATGGGTATGACCTGCCACGCGCGTCACCAGTCCCCGAGCAT GTGACCGTTGTGCAAGATATCCGGGCAGCCTCCAAAGTTGTCTCAAAACT GTTCACGCTTCCCCATGATACTCTTGTAGCATGGGACACTGAGACCACCG GGGTTGATCCATCGAAGCAATCTCCTGTTGGAAATGGACGTGTTTTATGT GCCACAGCGTATGCAGGCCATCATGTTGATTTTGGAACGGGGCCGAGACT ATTTGTAGATTGTGTAAAACCGGGCGTGTTACATGCATTACGTCCTTATT TTGAGAGTGAGAACAGACCAAAAGTGTGGCACAACTACTCCTTTGATAAA CATGTTCTGGGAAATCACGGGATTACTGCTCGTGGGTTTGCCGGCGACAC AATGCATATGGCGAGACTTGTCGACTCCTCACTGCAAAAGTATTCATTGG AACAGCTGTGCAAACATTTCCTGGAATCGGACATGCGAAAGGTCACGATG TCCGAACGTTTTGGTCTCTTGGAAGGGAAGAAGGCCGCACTGAACACTCT CGGCATACACAACAATGAAGAGCTGAGAGATGAATGGATTGACTATGCAT CCATGGATGCAGAACTCACACACCGCTTGTGTCATCGTCTGAAGAACGAG CTTCAGAACATGAACATTCATGGTAGCAACAGTGTGCCAGAAATTGTACA TCGATATAGGAATCTTTTTGAACTATACGCAGGCCTTTTCGTTCCCTTTG GCGAGCTCCTCACAGAAATGGAAAGTGATGGGTTCAAGGTTGACACTGAC TGGTTGAGAGAGGCTGCCGTTCATGCGCGGGGTGAACAACTAGCGTACGA GGACAAGTTCAGAAATTGGGCGCAAAAGCATTCTCCTGATGCGAAGTATA TGAACGTTCATTCTGACCTTCAGAAGCAGCAGCTTTTCTTTGCCCCATGT ACAAACAAATTTGACAAGAAGGAAACCATGCCTCGTCGAAAATCTTTCAA TTTGGAGCTGACTGGGGAACTGAAAGAAAGATATTTGAACCGGCTCCAGA ATAGTGCGTCTCGGGAGGAGCAAGAACTGTACAAGATGTATTCTGGACCC GACGCAAAGAAAAAAGTGAAGTGTGATGTTGTCCTGGAAGGCCTAGGAAA GAAGCCGGACGAATATACTGTGAAGGGATGGCCAAGCGTTTCCGCGAGGG CCTTGAAGAAATTGGCAAAGAAGATGTCAAAGAGAGATGACAGCGATGAC AACGAATTGAGCGCCGCAATTGAAGATCTGATCAATGCCACTTCAGTTTC AAGCCTAATGTCAAGCTTTATACTTCCTCTTCAACAATGGCCGGGAAAGG ATGGACGAATTCACGCGTCTCTAAACTTGAACACCGAGACTGGACGACTC TCCTCACGGCGACCGAATCTACAGAATCAGCCCGCCTTGGAAAAGGATCG GTATAAAATTCGGAAAGCATTTGTCCCGGAGAACGGGAAATCTCTAATTG TCGCTGACTATGGACAACTTGAGTTGCGTTTGTTAGCTCACATCACAAAC TGCAAATCTATGATTGAAGCCTTTAAGGCCGGAGGAGATTTTCATTCTCG AACTGCATTAACCATGTTTGATAATGTGAAAGCAGCAATTTCGCAAGGGA AGTGTATCCTCGAACGGGAAGTAGGTAACAAACCAGCCAGGGACTTGCCT CTTCTAAAAGATATGTTTCCTACCGAAAGAAGAAAAGCGAAGACATTAAA TTTTTCAATTGCCTATGGAAAAACAATTGTTGGCCTTGCTCGAGACTGGA ACACAAGTGAAGAGGAAGCAGCTGAAACATTGAACTTGTGGTACAAAGAG CGTCAGGAGGTAAGAATATGGCAGCGGGAGTGCAAGAAGTTCCTCCAGAA GCACCATTTTGTTGAAACTATACTCGGCAGAAGAAGGCATTTACCTGACA TAGTTTCCGTGAAACCACACGAGAGATTCCACGCACAACGAGCAGCAATA AATGCCCCTCTTCAAGGATCTGCGGCCGATCTGGTTATGGGTGCGATGCT TAAACTGCATAGAGATCGAGTTCTGAGAACTTTGGGTTGGAAGGTAATTC TACAAGTTCACGACGAAATCATTCTTGAAGGTCCAGAAGAGTCGGCTGAC ATCGCCTTGCCAATCGTAGTGGATAAAATGAAGAATCCTGTTGACGTTGA CCTTCGTGTCGATTTGACTGTGGATGCGAAGTGTGCAAAATCTTGGTACG AAGCGAAATGA back to top
|