Gcaud1836.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1836.t1
Unique Name	Gcaud1836.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	670

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_23_length_76035_cov_4.613123	contig	NODE_23_length_76035_cov_4.613123:68159..70168 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703818.1
Preferred name	SDH3-1
PFAMs	HSP70,Sdh_cyt
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00045
KEGG ko	ko:K00236,ko:K04043
KEGG TC	1.A.33.1
KEGG Reaction	R02164
KEGG Pathway	ko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko03018,ko04212,ko04714,ko04932,ko05010,ko05012,ko05016,ko05152,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map03018,map04212,map04714,map04932,map05010,map05012,map05016,map05152
KEGG Module	M00009,M00011,M00148
GOs	GO:0000166,GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006970,GO:0006986,GO:0008144,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009889,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010556,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016989,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022607,GO:0030312,GO:0030554,GO:0031090,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034620,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043531,GO:0043933,GO:0044085,GO:0044183,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045273,GO:0046686,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0070469,GO:0070887,GO:0071310,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:0097367,GO:0098588,GO:0098796,GO:0098803,GO:0098805,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2001141
Evalue	0.0
EggNOG OGs	COG0443@1\|root,KOG0102@2759\|Eukaryota
Description	unfolded protein binding
COG category	O
BRITE	ko00000,ko00001,ko00002,ko03019,ko03029,ko03110,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1836	Gcaud1836	Gracilaria caudata M_176_S67 male	gene	NODE_23_length_76035_cov_4.613123 68159..70168 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1836.t1.stop1	Gcaud1836.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_23_length_76035_cov_4.613123 68159..68161 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1836.t1.CDS1	Gcaud1836.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 68159..70168 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1836.t1.exon1	Gcaud1836.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 68159..70168 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1836.t1.start1	Gcaud1836.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_23_length_76035_cov_4.613123 70166..70168 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1836.t1	Gcaud1836.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_23_length_76035_cov_4.613123 68159..70168 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_23_length_76035_cov_4.613123:68159..70168-
coding sequence from alignment at NODE_23_length_76035_cov_4.613123:68159..70168-

mRNA sequence

>Gcaud1836.t1 ID=Gcaud1836.t1|Name=Gcaud1836.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=670bp
MRVLSRFGVALRRASVSQRRGLSSAISGDVIGIDLGTTNSCVAVMEGKTP
RVIENAEGVRTTPSVVAFTQDGEKLVGIPARRQAVTNPTNTLFATKRLIG
RRFSDKETQSDVGSMPYKIVQGPNGDAWVEAGGQKYSPSQVGAFVLQKMK
ETAESFLGRKVNHAVITVPAYFNDSQRQATKDAGKIAGLDVARIINEPTA
AALAYGLEKADGKIVAVYDLGGGTFDVSILEISGGVFEVKATNGDTHLGG
EDFDNVLLEHLVSEFKKEQGIDLSKDRLALQRLREAAEKAKIELSSTMQT
DINLPFITADASGPKHMNMKLTRAKYEALVDPLVRRTLNPMKNCLKDAGV
SSKDIGEVLMVGGMTRVPRVQEIVKEFFGRDPSKSVNPDEVVAMGAAVQG
GVLRGDVKDILLLDVTPLSLGLETLGGVFTRLINRNTTIPTKKSQVFSTA
ADNQTQVGIKVLQGEREMAADNKMLGQFDLVGIPPAPRGVPQIDVVFDID
ANGILHVSARDKATGKEQSIRIQSSGGLSDADIDEMVKNAESFAAADKDR
RETIEAKNDADSLLYSTEKSFNEHKDKLSSEQIADVEAAMTDLRSELDNE
GASASDIKAKTEALSKAAMSIGEAMYKASQEANAQRDAASESSSTTDEDP
KSESDSEKEPEKDKKAGGA*

spliced messenger RNA

>Gcaud1836.t1 ID=Gcaud1836.t1|Name=Gcaud1836.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2010bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:68159..70168- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTCTTGTCCCGCTTTGGCGTCGCGCTTCGTCGTGCCTCCGTGTC
GCAGCGCAGGGGGCTGTCCTCTGCCATCTCCGGCGATGTCATCGGTATTG
ATCTTGGCACAACCAACTCCTGTGTTGCGGTGATGGAGGGCAAGACCCCG
CGTGTCATCGAGAACGCAGAGGGAGTGAGAACTACCCCCTCAGTAGTCGC
CTTCACCCAAGATGGTGAGAAGCTTGTGGGAATTCCTGCTCGCCGACAGG
CTGTTACTAATCCTACCAATACGCTCTTTGCCACTAAGCGACTCATTGGC
CGCCGTTTCTCTGATAAGGAGACTCAGTCCGACGTTGGCTCCATGCCGTA
TAAGATTGTCCAGGGTCCGAATGGAGATGCCTGGGTCGAGGCTGGCGGCC
AGAAGTACTCCCCGAGTCAGGTTGGAGCCTTTGTCTTGCAGAAGATGAAG
GAGACTGCCGAGAGCTTCTTGGGACGCAAGGTCAATCACGCTGTCATTAC
TGTTCCGGCGTACTTCAATGACTCGCAGAGACAGGCTACCAAGGATGCTG
GTAAGATTGCTGGCTTGGATGTTGCTCGCATTATTAACGAGCCTACTGCG
GCAGCACTGGCGTACGGCTTGGAGAAGGCTGATGGGAAGATTGTCGCTGT
GTATGATCTTGGAGGTGGTACTTTCGATGTCAGTATTCTTGAGATTTCCG
GCGGTGTCTTTGAAGTAAAGGCAACTAATGGAGACACTCATCTCGGTGGT
GAAGATTTCGACAATGTCTTGCTTGAGCATCTTGTTTCCGAGTTCAAGAA
GGAGCAGGGCATTGACCTTTCAAAGGACAGACTTGCACTGCAAAGATTGC
GAGAAGCCGCAGAGAAGGCCAAGATCGAGTTGTCGTCTACCATGCAAACT
GATATTAACCTCCCCTTCATTACAGCCGATGCCAGCGGACCGAAACACAT
GAACATGAAGCTAACTCGCGCCAAGTACGAGGCTCTTGTTGACCCTCTTG
TCAGGCGTACACTGAATCCCATGAAGAATTGCCTAAAAGATGCCGGTGTT
TCTTCCAAAGACATCGGCGAGGTTCTTATGGTGGGAGGTATGACTCGTGT
GCCGCGCGTGCAAGAGATAGTGAAGGAGTTCTTTGGCAGGGATCCGTCGA
AGAGCGTAAATCCTGATGAGGTTGTTGCGATGGGTGCTGCTGTACAGGGT
GGTGTCTTGCGAGGTGACGTGAAGGATATCTTGTTGCTTGATGTCACTCC
TCTTTCTCTTGGTCTAGAAACGTTGGGAGGAGTCTTCACACGACTGATTA
ACAGGAACACCACCATCCCTACCAAGAAATCTCAGGTGTTCTCAACAGCT
GCTGATAATCAGACGCAGGTGGGTATCAAGGTTCTCCAGGGTGAGCGAGA
AATGGCTGCGGATAACAAGATGCTGGGACAGTTCGATCTTGTTGGCATTC
CTCCCGCACCAAGAGGCGTGCCGCAGATTGATGTTGTTTTTGATATCGAT
GCGAACGGTATTCTTCACGTGTCTGCTCGAGACAAGGCCACGGGCAAGGA
ACAAAGTATTCGAATCCAGAGTTCTGGCGGCTTGTCGGATGCCGACATTG
ATGAAATGGTTAAGAACGCTGAATCCTTCGCTGCTGCCGATAAGGATCGT
CGCGAAACCATCGAGGCGAAGAACGACGCGGATAGCTTACTGTACAGCAC
TGAGAAGAGCTTCAATGAACATAAGGACAAGCTGTCTTCAGAGCAGATTG
CTGATGTCGAGGCTGCGATGACGGACTTGCGCTCAGAACTTGATAACGAG
GGCGCCTCCGCATCAGATATTAAGGCAAAGACAGAGGCTTTGTCGAAGGC
CGCTATGTCAATAGGAGAAGCGATGTACAAGGCTTCTCAGGAAGCCAATG
CACAGAGGGATGCTGCGTCTGAATCGTCGTCGACTACAGATGAAGACCCC
AAGTCTGAGAGTGACTCGGAAAAGGAACCTGAGAAGGACAAGAAGGCTGG
CGGGGCATAA

protein sequence of Gcaud1836.t1

>Gcaud1836.t1 ID=Gcaud1836.t1|Name=Gcaud1836.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=670bp
MRVLSRFGVALRRASVSQRRGLSSAISGDVIGIDLGTTNSCVAVMEGKTP
RVIENAEGVRTTPSVVAFTQDGEKLVGIPARRQAVTNPTNTLFATKRLIG
RRFSDKETQSDVGSMPYKIVQGPNGDAWVEAGGQKYSPSQVGAFVLQKMK
ETAESFLGRKVNHAVITVPAYFNDSQRQATKDAGKIAGLDVARIINEPTA
AALAYGLEKADGKIVAVYDLGGGTFDVSILEISGGVFEVKATNGDTHLGG
EDFDNVLLEHLVSEFKKEQGIDLSKDRLALQRLREAAEKAKIELSSTMQT
DINLPFITADASGPKHMNMKLTRAKYEALVDPLVRRTLNPMKNCLKDAGV
SSKDIGEVLMVGGMTRVPRVQEIVKEFFGRDPSKSVNPDEVVAMGAAVQG
GVLRGDVKDILLLDVTPLSLGLETLGGVFTRLINRNTTIPTKKSQVFSTA
ADNQTQVGIKVLQGEREMAADNKMLGQFDLVGIPPAPRGVPQIDVVFDID
ANGILHVSARDKATGKEQSIRIQSSGGLSDADIDEMVKNAESFAAADKDR
RETIEAKNDADSLLYSTEKSFNEHKDKLSSEQIADVEAAMTDLRSELDNE
GASASDIKAKTEALSKAAMSIGEAMYKASQEANAQRDAASESSSTTDEDP
KSESDSEKEPEKDKKAGGA*

mRNA from alignment at NODE_23_length_76035_cov_4.613123:68159..70168-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1836.t1 ID=Gcaud1836.t1|Name=Gcaud1836.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2010bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:68159..70168- (Gracilaria caudata M_176_S67 male)
ATGCGCGTCTTGTCCCGCTTTGGCGTCGCGCTTCGTCGTGCCTCCGTGTC
GCAGCGCAGGGGGCTGTCCTCTGCCATCTCCGGCGATGTCATCGGTATTG
ATCTTGGCACAACCAACTCCTGTGTTGCGGTGATGGAGGGCAAGACCCCG
CGTGTCATCGAGAACGCAGAGGGAGTGAGAACTACCCCCTCAGTAGTCGC
CTTCACCCAAGATGGTGAGAAGCTTGTGGGAATTCCTGCTCGCCGACAGG
CTGTTACTAATCCTACCAATACGCTCTTTGCCACTAAGCGACTCATTGGC
CGCCGTTTCTCTGATAAGGAGACTCAGTCCGACGTTGGCTCCATGCCGTA
TAAGATTGTCCAGGGTCCGAATGGAGATGCCTGGGTCGAGGCTGGCGGCC
AGAAGTACTCCCCGAGTCAGGTTGGAGCCTTTGTCTTGCAGAAGATGAAG
GAGACTGCCGAGAGCTTCTTGGGACGCAAGGTCAATCACGCTGTCATTAC
TGTTCCGGCGTACTTCAATGACTCGCAGAGACAGGCTACCAAGGATGCTG
GTAAGATTGCTGGCTTGGATGTTGCTCGCATTATTAACGAGCCTACTGCG
GCAGCACTGGCGTACGGCTTGGAGAAGGCTGATGGGAAGATTGTCGCTGT
GTATGATCTTGGAGGTGGTACTTTCGATGTCAGTATTCTTGAGATTTCCG
GCGGTGTCTTTGAAGTAAAGGCAACTAATGGAGACACTCATCTCGGTGGT
GAAGATTTCGACAATGTCTTGCTTGAGCATCTTGTTTCCGAGTTCAAGAA
GGAGCAGGGCATTGACCTTTCAAAGGACAGACTTGCACTGCAAAGATTGC
GAGAAGCCGCAGAGAAGGCCAAGATCGAGTTGTCGTCTACCATGCAAACT
GATATTAACCTCCCCTTCATTACAGCCGATGCCAGCGGACCGAAACACAT
GAACATGAAGCTAACTCGCGCCAAGTACGAGGCTCTTGTTGACCCTCTTG
TCAGGCGTACACTGAATCCCATGAAGAATTGCCTAAAAGATGCCGGTGTT
TCTTCCAAAGACATCGGCGAGGTTCTTATGGTGGGAGGTATGACTCGTGT
GCCGCGCGTGCAAGAGATAGTGAAGGAGTTCTTTGGCAGGGATCCGTCGA
AGAGCGTAAATCCTGATGAGGTTGTTGCGATGGGTGCTGCTGTACAGGGT
GGTGTCTTGCGAGGTGACGTGAAGGATATCTTGTTGCTTGATGTCACTCC
TCTTTCTCTTGGTCTAGAAACGTTGGGAGGAGTCTTCACACGACTGATTA
ACAGGAACACCACCATCCCTACCAAGAAATCTCAGGTGTTCTCAACAGCT
GCTGATAATCAGACGCAGGTGGGTATCAAGGTTCTCCAGGGTGAGCGAGA
AATGGCTGCGGATAACAAGATGCTGGGACAGTTCGATCTTGTTGGCATTC
CTCCCGCACCAAGAGGCGTGCCGCAGATTGATGTTGTTTTTGATATCGAT
GCGAACGGTATTCTTCACGTGTCTGCTCGAGACAAGGCCACGGGCAAGGA
ACAAAGTATTCGAATCCAGAGTTCTGGCGGCTTGTCGGATGCCGACATTG
ATGAAATGGTTAAGAACGCTGAATCCTTCGCTGCTGCCGATAAGGATCGT
CGCGAAACCATCGAGGCGAAGAACGACGCGGATAGCTTACTGTACAGCAC
TGAGAAGAGCTTCAATGAACATAAGGACAAGCTGTCTTCAGAGCAGATTG
CTGATGTCGAGGCTGCGATGACGGACTTGCGCTCAGAACTTGATAACGAG
GGCGCCTCCGCATCAGATATTAAGGCAAAGACAGAGGCTTTGTCGAAGGC
CGCTATGTCAATAGGAGAAGCGATGTACAAGGCTTCTCAGGAAGCCAATG
CACAGAGGGATGCTGCGTCTGAATCGTCGTCGACTACAGATGAAGACCCC
AAGTCTGAGAGTGACTCGGAAAAGGAACCTGAGAAGGACAAGAAGGCTGG
CGGGGCATAA

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:68159..70168-

>Gcaud1836.t1 ID=Gcaud1836.t1|Name=Gcaud1836.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2010bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:68159..70168- (Gracilaria caudata M_176_S67 male)
ATGCGCGTCTTGTCCCGCTTTGGCGTCGCGCTTCGTCGTGCCTCCGTGTC
GCAGCGCAGGGGGCTGTCCTCTGCCATCTCCGGCGATGTCATCGGTATTG
ATCTTGGCACAACCAACTCCTGTGTTGCGGTGATGGAGGGCAAGACCCCG
CGTGTCATCGAGAACGCAGAGGGAGTGAGAACTACCCCCTCAGTAGTCGC
CTTCACCCAAGATGGTGAGAAGCTTGTGGGAATTCCTGCTCGCCGACAGG
CTGTTACTAATCCTACCAATACGCTCTTTGCCACTAAGCGACTCATTGGC
CGCCGTTTCTCTGATAAGGAGACTCAGTCCGACGTTGGCTCCATGCCGTA
TAAGATTGTCCAGGGTCCGAATGGAGATGCCTGGGTCGAGGCTGGCGGCC
AGAAGTACTCCCCGAGTCAGGTTGGAGCCTTTGTCTTGCAGAAGATGAAG
GAGACTGCCGAGAGCTTCTTGGGACGCAAGGTCAATCACGCTGTCATTAC
TGTTCCGGCGTACTTCAATGACTCGCAGAGACAGGCTACCAAGGATGCTG
GTAAGATTGCTGGCTTGGATGTTGCTCGCATTATTAACGAGCCTACTGCG
GCAGCACTGGCGTACGGCTTGGAGAAGGCTGATGGGAAGATTGTCGCTGT
GTATGATCTTGGAGGTGGTACTTTCGATGTCAGTATTCTTGAGATTTCCG
GCGGTGTCTTTGAAGTAAAGGCAACTAATGGAGACACTCATCTCGGTGGT
GAAGATTTCGACAATGTCTTGCTTGAGCATCTTGTTTCCGAGTTCAAGAA
GGAGCAGGGCATTGACCTTTCAAAGGACAGACTTGCACTGCAAAGATTGC
GAGAAGCCGCAGAGAAGGCCAAGATCGAGTTGTCGTCTACCATGCAAACT
GATATTAACCTCCCCTTCATTACAGCCGATGCCAGCGGACCGAAACACAT
GAACATGAAGCTAACTCGCGCCAAGTACGAGGCTCTTGTTGACCCTCTTG
TCAGGCGTACACTGAATCCCATGAAGAATTGCCTAAAAGATGCCGGTGTT
TCTTCCAAAGACATCGGCGAGGTTCTTATGGTGGGAGGTATGACTCGTGT
GCCGCGCGTGCAAGAGATAGTGAAGGAGTTCTTTGGCAGGGATCCGTCGA
AGAGCGTAAATCCTGATGAGGTTGTTGCGATGGGTGCTGCTGTACAGGGT
GGTGTCTTGCGAGGTGACGTGAAGGATATCTTGTTGCTTGATGTCACTCC
TCTTTCTCTTGGTCTAGAAACGTTGGGAGGAGTCTTCACACGACTGATTA
ACAGGAACACCACCATCCCTACCAAGAAATCTCAGGTGTTCTCAACAGCT
GCTGATAATCAGACGCAGGTGGGTATCAAGGTTCTCCAGGGTGAGCGAGA
AATGGCTGCGGATAACAAGATGCTGGGACAGTTCGATCTTGTTGGCATTC
CTCCCGCACCAAGAGGCGTGCCGCAGATTGATGTTGTTTTTGATATCGAT
GCGAACGGTATTCTTCACGTGTCTGCTCGAGACAAGGCCACGGGCAAGGA
ACAAAGTATTCGAATCCAGAGTTCTGGCGGCTTGTCGGATGCCGACATTG
ATGAAATGGTTAAGAACGCTGAATCCTTCGCTGCTGCCGATAAGGATCGT
CGCGAAACCATCGAGGCGAAGAACGACGCGGATAGCTTACTGTACAGCAC
TGAGAAGAGCTTCAATGAACATAAGGACAAGCTGTCTTCAGAGCAGATTG
CTGATGTCGAGGCTGCGATGACGGACTTGCGCTCAGAACTTGATAACGAG
GGCGCCTCCGCATCAGATATTAAGGCAAAGACAGAGGCTTTGTCGAAGGC
CGCTATGTCAATAGGAGAAGCGATGTACAAGGCTTCTCAGGAAGCCAATG
CACAGAGGGATGCTGCGTCTGAATCGTCGTCGACTACAGATGAAGACCCC
AAGTCTGAGAGTGACTCGGAAAAGGAACCTGAGAAGGACAAGAAGGCTGG
CGGGGCATAA