Gcaud1825.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1825.t1
Unique NameGcaud1825.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length525
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_23_length_76035_cov_4.613123contigNODE_23_length_76035_cov_4.613123:41268..42842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705479.1
PFAMsFer2_4,Molybdopterin,NADH-G_4Fe-4S_3,NADH_dhqG_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00061
KEGG koko:K03934
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Evalue4.87e-195
EggNOG OGsCOG1034@1|root,KOG2282@2759|Eukaryota
EC1.6.5.3,1.6.99.3
DescriptionNADH dehydrogenase (quinone) activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1825Gcaud1825Gracilaria caudata M_176_S67 malegeneNODE_23_length_76035_cov_4.613123 41268..42842 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1825.t1.stop1Gcaud1825.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_23_length_76035_cov_4.613123 41268..41270 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1825.t1.CDS1Gcaud1825.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_23_length_76035_cov_4.613123 41268..42842 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1825.t1.exon1Gcaud1825.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_23_length_76035_cov_4.613123 41268..42842 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1825.t1.start1Gcaud1825.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_23_length_76035_cov_4.613123 42840..42842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1825.t1Gcaud1825.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_23_length_76035_cov_4.613123 41268..42842 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1825.t1 ID=Gcaud1825.t1|Name=Gcaud1825.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=525bp
MAARSAALKFARKTLVSASAQTGQGYPIQAVGALTSKPYAFKTRSWELKS
TESIDIFDGVGSNIRIDTRGSEIMRVLPRLNEYVNEEWISDKSRFSYDGL
KRQRLSTPMVRDGDGNLIPVPWERAHEFLKNSLISLHLDNPDGFESHAVI
GPYVDANAALELRSQFYRWFPCGQIHVQEQPRNIPTDFRHVYLHNVTLPQ
LEEADVALLIGSDPRKEAPLLNARLRKASLYGGLITGVVGCNVNLTYPVE
HLGNSISTLAAIAQGSHPFAHTIASSQRPVVIVGNRALQRIDGNTVLKLA
EDIVRNCDGVKDDWDALCVLHQGANTVGNLDIGFEDKYAGLRAVDAGSWS
TTKVLFLLGADDIDNLDVPNDCFVIYQGHHGDRGASIANVVLPGAAYTEK
DSIYVNTEGRVQKSKLAFFPPGIARDDALVLRDLLGAEEHLENVRATLKS
PGLEVLAPHLLRANFVQKADRVLGTESVLPAGSLQASNTPFQAPVDNFYM
TDPITRSSKTMAKCTRVRDKSNFA*
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spliced messenger RNA

>Gcaud1825.t1 ID=Gcaud1825.t1|Name=Gcaud1825.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1575bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:41268..42842- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCACGATCTGCAGCCCTTAAATTCGCTCGCAAGACGCTAGTGTC
CGCGTCAGCGCAAACGGGACAAGGCTACCCTATTCAAGCTGTAGGTGCAT
TAACATCCAAACCGTATGCCTTCAAGACTCGCAGCTGGGAGCTCAAATCA
ACAGAATCCATTGATATTTTCGATGGAGTTGGCTCTAATATTCGCATCGA
TACACGCGGATCGGAGATCATGCGCGTTCTACCTAGATTGAATGAGTACG
TTAATGAGGAATGGATCTCAGATAAATCGCGATTTTCGTACGACGGGTTA
AAGAGACAACGTCTCAGCACTCCGATGGTTCGCGATGGGGACGGCAACTT
AATTCCTGTGCCTTGGGAGCGCGCTCACGAATTTTTGAAGAACTCTCTGA
TTTCGTTGCATCTCGACAATCCTGATGGTTTTGAAAGCCATGCCGTTATT
GGTCCTTACGTAGATGCAAACGCAGCGCTTGAACTGCGATCCCAGTTTTA
TAGATGGTTCCCTTGCGGACAGATCCATGTACAGGAACAGCCTCGTAACA
TTCCCACCGACTTCCGCCATGTATACCTCCACAACGTCACACTTCCGCAG
CTAGAGGAGGCAGACGTTGCACTCCTTATTGGTTCTGATCCGCGAAAAGA
AGCGCCTTTGTTGAACGCTCGTCTTCGAAAGGCGTCGCTCTATGGCGGAC
TCATTACTGGAGTTGTTGGGTGCAACGTGAATCTCACGTATCCAGTTGAA
CATCTTGGGAACTCCATCAGCACGCTTGCTGCGATCGCCCAAGGCTCGCA
TCCATTTGCACACACAATTGCATCTTCTCAAAGGCCAGTTGTAATTGTGG
GCAATCGTGCTTTGCAGCGAATCGACGGTAATACGGTTCTGAAGCTTGCG
GAAGACATCGTTCGGAATTGTGACGGTGTCAAAGATGATTGGGATGCGTT
GTGCGTACTACATCAAGGTGCTAATACAGTTGGAAATCTAGATATTGGGT
TTGAGGACAAATATGCTGGGTTACGCGCTGTCGACGCTGGCTCGTGGTCG
ACCACTAAGGTCCTATTCCTCCTTGGTGCGGATGACATCGACAATCTTGA
CGTACCAAACGATTGCTTTGTCATCTACCAAGGACATCATGGAGATCGCG
GTGCAAGCATTGCTAACGTTGTCCTTCCTGGAGCGGCCTATACGGAAAAG
GACTCTATTTATGTGAACACTGAAGGAAGAGTTCAGAAGTCAAAGCTTGC
GTTTTTCCCCCCAGGAATTGCAAGGGATGATGCCCTGGTTTTGCGTGATT
TGCTTGGCGCTGAAGAGCATTTGGAAAATGTCAGAGCAACTCTTAAGTCC
CCTGGACTGGAGGTCTTGGCACCACACCTGCTTAGGGCAAATTTCGTTCA
AAAGGCTGACCGAGTTTTGGGAACGGAGAGCGTGTTACCGGCGGGAAGTT
TGCAAGCTAGTAACACTCCTTTCCAAGCGCCTGTTGATAACTTTTATATG
ACAGACCCGATCACTCGGAGCTCCAAGACAATGGCGAAGTGCACGCGTGT
GAGAGATAAGAGCAATTTTGCTTGA
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protein sequence of Gcaud1825.t1

>Gcaud1825.t1 ID=Gcaud1825.t1|Name=Gcaud1825.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=525bp
MAARSAALKFARKTLVSASAQTGQGYPIQAVGALTSKPYAFKTRSWELKS
TESIDIFDGVGSNIRIDTRGSEIMRVLPRLNEYVNEEWISDKSRFSYDGL
KRQRLSTPMVRDGDGNLIPVPWERAHEFLKNSLISLHLDNPDGFESHAVI
GPYVDANAALELRSQFYRWFPCGQIHVQEQPRNIPTDFRHVYLHNVTLPQ
LEEADVALLIGSDPRKEAPLLNARLRKASLYGGLITGVVGCNVNLTYPVE
HLGNSISTLAAIAQGSHPFAHTIASSQRPVVIVGNRALQRIDGNTVLKLA
EDIVRNCDGVKDDWDALCVLHQGANTVGNLDIGFEDKYAGLRAVDAGSWS
TTKVLFLLGADDIDNLDVPNDCFVIYQGHHGDRGASIANVVLPGAAYTEK
DSIYVNTEGRVQKSKLAFFPPGIARDDALVLRDLLGAEEHLENVRATLKS
PGLEVLAPHLLRANFVQKADRVLGTESVLPAGSLQASNTPFQAPVDNFYM
TDPITRSSKTMAKCTRVRDKSNFA*
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mRNA from alignment at NODE_23_length_76035_cov_4.613123:41268..42842-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1825.t1 ID=Gcaud1825.t1|Name=Gcaud1825.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1575bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:41268..42842- (Gracilaria caudata M_176_S67 male)
ATGGCAGCACGATCTGCAGCCCTTAAATTCGCTCGCAAGACGCTAGTGTC
CGCGTCAGCGCAAACGGGACAAGGCTACCCTATTCAAGCTGTAGGTGCAT
TAACATCCAAACCGTATGCCTTCAAGACTCGCAGCTGGGAGCTCAAATCA
ACAGAATCCATTGATATTTTCGATGGAGTTGGCTCTAATATTCGCATCGA
TACACGCGGATCGGAGATCATGCGCGTTCTACCTAGATTGAATGAGTACG
TTAATGAGGAATGGATCTCAGATAAATCGCGATTTTCGTACGACGGGTTA
AAGAGACAACGTCTCAGCACTCCGATGGTTCGCGATGGGGACGGCAACTT
AATTCCTGTGCCTTGGGAGCGCGCTCACGAATTTTTGAAGAACTCTCTGA
TTTCGTTGCATCTCGACAATCCTGATGGTTTTGAAAGCCATGCCGTTATT
GGTCCTTACGTAGATGCAAACGCAGCGCTTGAACTGCGATCCCAGTTTTA
TAGATGGTTCCCTTGCGGACAGATCCATGTACAGGAACAGCCTCGTAACA
TTCCCACCGACTTCCGCCATGTATACCTCCACAACGTCACACTTCCGCAG
CTAGAGGAGGCAGACGTTGCACTCCTTATTGGTTCTGATCCGCGAAAAGA
AGCGCCTTTGTTGAACGCTCGTCTTCGAAAGGCGTCGCTCTATGGCGGAC
TCATTACTGGAGTTGTTGGGTGCAACGTGAATCTCACGTATCCAGTTGAA
CATCTTGGGAACTCCATCAGCACGCTTGCTGCGATCGCCCAAGGCTCGCA
TCCATTTGCACACACAATTGCATCTTCTCAAAGGCCAGTTGTAATTGTGG
GCAATCGTGCTTTGCAGCGAATCGACGGTAATACGGTTCTGAAGCTTGCG
GAAGACATCGTTCGGAATTGTGACGGTGTCAAAGATGATTGGGATGCGTT
GTGCGTACTACATCAAGGTGCTAATACAGTTGGAAATCTAGATATTGGGT
TTGAGGACAAATATGCTGGGTTACGCGCTGTCGACGCTGGCTCGTGGTCG
ACCACTAAGGTCCTATTCCTCCTTGGTGCGGATGACATCGACAATCTTGA
CGTACCAAACGATTGCTTTGTCATCTACCAAGGACATCATGGAGATCGCG
GTGCAAGCATTGCTAACGTTGTCCTTCCTGGAGCGGCCTATACGGAAAAG
GACTCTATTTATGTGAACACTGAAGGAAGAGTTCAGAAGTCAAAGCTTGC
GTTTTTCCCCCCAGGAATTGCAAGGGATGATGCCCTGGTTTTGCGTGATT
TGCTTGGCGCTGAAGAGCATTTGGAAAATGTCAGAGCAACTCTTAAGTCC
CCTGGACTGGAGGTCTTGGCACCACACCTGCTTAGGGCAAATTTCGTTCA
AAAGGCTGACCGAGTTTTGGGAACGGAGAGCGTGTTACCGGCGGGAAGTT
TGCAAGCTAGTAACACTCCTTTCCAAGCGCCTGTTGATAACTTTTATATG
ACAGACCCGATCACTCGGAGCTCCAAGACAATGGCGAAGTGCACGCGTGT
GAGAGATAAGAGCAATTTTGCTTGA
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Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:41268..42842-

>Gcaud1825.t1 ID=Gcaud1825.t1|Name=Gcaud1825.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1575bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:41268..42842- (Gracilaria caudata M_176_S67 male)
ATGGCAGCACGATCTGCAGCCCTTAAATTCGCTCGCAAGACGCTAGTGTC
CGCGTCAGCGCAAACGGGACAAGGCTACCCTATTCAAGCTGTAGGTGCAT
TAACATCCAAACCGTATGCCTTCAAGACTCGCAGCTGGGAGCTCAAATCA
ACAGAATCCATTGATATTTTCGATGGAGTTGGCTCTAATATTCGCATCGA
TACACGCGGATCGGAGATCATGCGCGTTCTACCTAGATTGAATGAGTACG
TTAATGAGGAATGGATCTCAGATAAATCGCGATTTTCGTACGACGGGTTA
AAGAGACAACGTCTCAGCACTCCGATGGTTCGCGATGGGGACGGCAACTT
AATTCCTGTGCCTTGGGAGCGCGCTCACGAATTTTTGAAGAACTCTCTGA
TTTCGTTGCATCTCGACAATCCTGATGGTTTTGAAAGCCATGCCGTTATT
GGTCCTTACGTAGATGCAAACGCAGCGCTTGAACTGCGATCCCAGTTTTA
TAGATGGTTCCCTTGCGGACAGATCCATGTACAGGAACAGCCTCGTAACA
TTCCCACCGACTTCCGCCATGTATACCTCCACAACGTCACACTTCCGCAG
CTAGAGGAGGCAGACGTTGCACTCCTTATTGGTTCTGATCCGCGAAAAGA
AGCGCCTTTGTTGAACGCTCGTCTTCGAAAGGCGTCGCTCTATGGCGGAC
TCATTACTGGAGTTGTTGGGTGCAACGTGAATCTCACGTATCCAGTTGAA
CATCTTGGGAACTCCATCAGCACGCTTGCTGCGATCGCCCAAGGCTCGCA
TCCATTTGCACACACAATTGCATCTTCTCAAAGGCCAGTTGTAATTGTGG
GCAATCGTGCTTTGCAGCGAATCGACGGTAATACGGTTCTGAAGCTTGCG
GAAGACATCGTTCGGAATTGTGACGGTGTCAAAGATGATTGGGATGCGTT
GTGCGTACTACATCAAGGTGCTAATACAGTTGGAAATCTAGATATTGGGT
TTGAGGACAAATATGCTGGGTTACGCGCTGTCGACGCTGGCTCGTGGTCG
ACCACTAAGGTCCTATTCCTCCTTGGTGCGGATGACATCGACAATCTTGA
CGTACCAAACGATTGCTTTGTCATCTACCAAGGACATCATGGAGATCGCG
GTGCAAGCATTGCTAACGTTGTCCTTCCTGGAGCGGCCTATACGGAAAAG
GACTCTATTTATGTGAACACTGAAGGAAGAGTTCAGAAGTCAAAGCTTGC
GTTTTTCCCCCCAGGAATTGCAAGGGATGATGCCCTGGTTTTGCGTGATT
TGCTTGGCGCTGAAGAGCATTTGGAAAATGTCAGAGCAACTCTTAAGTCC
CCTGGACTGGAGGTCTTGGCACCACACCTGCTTAGGGCAAATTTCGTTCA
AAAGGCTGACCGAGTTTTGGGAACGGAGAGCGTGTTACCGGCGGGAAGTT
TGCAAGCTAGTAACACTCCTTTCCAAGCGCCTGTTGATAACTTTTATATG
ACAGACCCGATCACTCGGAGCTCCAAGACAATGGCGAAGTGCACGCGTGT
GAGAGATAAGAGCAATTTTGCTTGA
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