Gcaud1818.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1818.t1
Unique NameGcaud1818.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length757
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_23_length_76035_cov_4.613123contigNODE_23_length_76035_cov_4.613123:25178..27448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707242.1
Preferred nameMES1
PFAMsAnticodon_1,MetRS-N,WHEP-TRS,tRNA-synt_1g,tRNA_bind
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01874,ko:K04567
KEGG ReactionR03658,R03659,R04773
KEGG Pathwayko00450,ko00970,map00450,map00970
KEGG ModuleM00359,M00360
GOsGO:0002181,GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017102,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Evalue2.27e-284
EggNOG OGsCOG0143@1|root,KOG1247@2759|Eukaryota,KOG2241@2759|Eukaryota
EC6.1.1.10,6.1.1.6
DescriptiontRNA binding
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1818Gcaud1818Gracilaria caudata M_176_S67 malegeneNODE_23_length_76035_cov_4.613123 25178..27448 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1818.t1.start1Gcaud1818.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_23_length_76035_cov_4.613123 25178..25180 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1818.t1.CDS1Gcaud1818.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_23_length_76035_cov_4.613123 25178..27448 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1818.t1.exon1Gcaud1818.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_23_length_76035_cov_4.613123 25178..27448 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1818.t1.stop1Gcaud1818.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_23_length_76035_cov_4.613123 27446..27448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1818.t1Gcaud1818.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_23_length_76035_cov_4.613123 25178..27448 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1818.t1 ID=Gcaud1818.t1|Name=Gcaud1818.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=757bp
MAEGAEYPLPSRSRRNILVTSALPYVNNYPHLGNIIGAVLSADVYSRYAR
QRSFNVIYVCGTDEYGTATETKAQQEGLTPRQICDKYHALHKQVYAWFDI
NFDVFGRTSTDAHTTIVQSVFERVYDNGYVTQDTITQLYCEKVCHRFLAD
RYVNGDCPNCGFDDARGDQCDNCGRMLNPAELLRPRCSTCGNEPVSRSTT
HLFLDLPKLQPELEKWVANASERGKWTNNALAMTRTWLNDQLKARCITRD
LKWGVPVPLDGFTDKVFYVWFDAPLGYPSITAKLCGEDWKKWWLPDEGED
IKLVQFMGKDNVPFHTIVFPGALIATNDSWTMLHHISTTDYLNYEDGKFS
KSRGVGVFGNDAIASGIPSEVWRYYLLLNRPEGSDAVFTWDDLAVKNNDE
LIKTLGNFMNRVITFLHKSFKGVVPELIPNDEEDEEFTKKVNIELKEYKR
LMDEVSLKAGLKKAMAIASIGNLYLQRKEPWNLLKEGDTRTAGSALTYAA
NLAVLVTVILEPFLGTKFSVKVFSQLGLQHKAGESNLIPERFEALQWIKA
GMKTGKPQILFTSLTKDQVAEFRRKFSGDASNTEQKEKNDEKRFALDLRV
GRIVDVREHQESERLFVGKVDVGEDDVRTVVAGLRDVYTADELNGRKVVL
VCNLAAANLAGVESQGMILVAEKKKITKVLSVDESVSVGNRIVAQDVSVG
DLEKRLDRKGFQTASKLLRVGKNGEIVYDKKHRLVVHGKEQLGVSSQGVA
EGGKVK*
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spliced messenger RNA

>Gcaud1818.t1 ID=Gcaud1818.t1|Name=Gcaud1818.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2271bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:25178..27448+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGAAGGCGCCGAGTATCCCCTTCCAAGCCGTTCAAGGCGCAATAT
CCTCGTTACTTCAGCTCTTCCATACGTCAATAACTACCCTCATTTGGGAA
ACATAATCGGAGCAGTTTTATCCGCCGATGTTTACTCTCGATATGCTCGT
CAAAGATCATTTAATGTGATATACGTTTGTGGGACTGATGAGTACGGTAC
TGCGACTGAAACCAAGGCACAACAAGAAGGACTAACTCCTCGTCAGATAT
GCGATAAATACCATGCACTTCATAAACAAGTTTATGCGTGGTTCGACATA
AATTTTGATGTGTTTGGAAGGACAAGCACGGATGCCCATACTACCATCGT
ACAATCTGTCTTTGAAAGGGTTTATGACAATGGTTATGTCACACAGGATA
CAATAACACAGCTGTACTGCGAGAAGGTTTGTCATCGTTTCTTAGCTGAT
CGCTATGTGAATGGTGATTGTCCCAATTGTGGATTTGATGATGCCAGGGG
TGATCAGTGCGACAACTGCGGTCGTATGCTCAATCCCGCAGAGTTGTTAC
GTCCAAGATGCTCTACATGTGGAAATGAACCGGTTTCGAGGTCTACGACG
CATCTTTTCTTGGATTTGCCAAAATTGCAGCCTGAATTGGAAAAGTGGGT
GGCAAACGCTTCTGAAAGAGGAAAATGGACAAACAATGCGCTTGCGATGA
CTCGAACATGGCTGAATGACCAGCTCAAAGCTCGATGCATTACGAGAGAC
CTGAAATGGGGTGTTCCTGTTCCTCTGGACGGTTTTACTGATAAAGTTTT
TTATGTTTGGTTTGACGCTCCGTTAGGGTATCCTTCTATAACCGCTAAAT
TATGCGGTGAAGATTGGAAGAAATGGTGGCTTCCTGATGAAGGTGAGGAC
ATTAAGCTCGTGCAGTTCATGGGAAAGGATAATGTTCCATTTCATACTAT
AGTGTTCCCCGGTGCCTTAATTGCTACAAACGACTCATGGACTATGTTAC
ACCACATTTCAACCACAGATTACCTGAACTACGAAGACGGGAAGTTTAGC
AAAAGTCGTGGTGTAGGCGTGTTTGGAAACGACGCTATCGCTTCGGGAAT
TCCTTCTGAGGTTTGGAGATATTATCTGTTACTTAATCGTCCAGAAGGAT
CGGATGCGGTATTCACCTGGGACGATCTCGCTGTGAAGAATAACGATGAA
CTTATCAAAACGTTAGGCAACTTCATGAATCGCGTAATCACTTTTCTACA
CAAGTCATTCAAGGGTGTAGTGCCTGAATTAATACCAAACGATGAAGAAG
ACGAAGAGTTCACAAAGAAAGTGAACATAGAACTGAAGGAATACAAACGA
CTCATGGACGAGGTAAGTTTGAAAGCTGGTTTGAAGAAAGCAATGGCAAT
TGCCAGCATTGGAAACTTATATCTACAGAGAAAAGAACCTTGGAATTTGC
TGAAAGAAGGAGATACTCGCACGGCAGGTAGCGCTCTTACTTACGCTGCG
AATCTGGCAGTGTTAGTGACAGTAATTTTGGAGCCGTTTTTGGGAACAAA
GTTTTCAGTGAAGGTATTCTCCCAACTGGGCTTGCAGCATAAAGCAGGTG
AAAGCAATTTGATACCAGAGAGGTTTGAGGCTTTGCAATGGATTAAAGCG
GGTATGAAAACAGGAAAACCACAGATTTTGTTCACCTCACTCACAAAAGA
TCAGGTGGCAGAGTTTAGAAGAAAATTCAGTGGAGATGCTTCAAACACTG
AACAGAAGGAGAAGAACGACGAAAAACGTTTCGCTCTTGACCTGAGAGTT
GGAAGAATTGTGGACGTTCGTGAGCACCAGGAATCTGAACGTTTGTTTGT
GGGCAAAGTGGATGTTGGAGAAGATGATGTTCGTACTGTTGTTGCTGGTT
TACGTGATGTGTACACTGCTGACGAACTGAATGGAAGAAAAGTGGTATTG
GTTTGTAATCTGGCAGCGGCCAATCTGGCTGGCGTCGAGTCTCAAGGAAT
GATCTTGGTGGCCGAAAAGAAGAAGATTACAAAAGTATTAAGCGTGGATG
AGAGCGTGTCTGTGGGCAATCGAATTGTGGCGCAGGATGTTAGTGTGGGC
GATCTAGAGAAAAGGCTGGATCGAAAAGGATTTCAAACGGCCAGCAAGTT
GCTACGAGTTGGGAAGAATGGAGAAATTGTGTACGATAAGAAGCACCGCC
TTGTGGTGCATGGGAAGGAGCAGTTGGGAGTGAGTTCACAAGGAGTTGCG
GAGGGTGGAAAAGTGAAGTAG
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protein sequence of Gcaud1818.t1

>Gcaud1818.t1 ID=Gcaud1818.t1|Name=Gcaud1818.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=757bp
MAEGAEYPLPSRSRRNILVTSALPYVNNYPHLGNIIGAVLSADVYSRYAR
QRSFNVIYVCGTDEYGTATETKAQQEGLTPRQICDKYHALHKQVYAWFDI
NFDVFGRTSTDAHTTIVQSVFERVYDNGYVTQDTITQLYCEKVCHRFLAD
RYVNGDCPNCGFDDARGDQCDNCGRMLNPAELLRPRCSTCGNEPVSRSTT
HLFLDLPKLQPELEKWVANASERGKWTNNALAMTRTWLNDQLKARCITRD
LKWGVPVPLDGFTDKVFYVWFDAPLGYPSITAKLCGEDWKKWWLPDEGED
IKLVQFMGKDNVPFHTIVFPGALIATNDSWTMLHHISTTDYLNYEDGKFS
KSRGVGVFGNDAIASGIPSEVWRYYLLLNRPEGSDAVFTWDDLAVKNNDE
LIKTLGNFMNRVITFLHKSFKGVVPELIPNDEEDEEFTKKVNIELKEYKR
LMDEVSLKAGLKKAMAIASIGNLYLQRKEPWNLLKEGDTRTAGSALTYAA
NLAVLVTVILEPFLGTKFSVKVFSQLGLQHKAGESNLIPERFEALQWIKA
GMKTGKPQILFTSLTKDQVAEFRRKFSGDASNTEQKEKNDEKRFALDLRV
GRIVDVREHQESERLFVGKVDVGEDDVRTVVAGLRDVYTADELNGRKVVL
VCNLAAANLAGVESQGMILVAEKKKITKVLSVDESVSVGNRIVAQDVSVG
DLEKRLDRKGFQTASKLLRVGKNGEIVYDKKHRLVVHGKEQLGVSSQGVA
EGGKVK*
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mRNA from alignment at NODE_23_length_76035_cov_4.613123:25178..27448+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1818.t1 ID=Gcaud1818.t1|Name=Gcaud1818.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2271bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:25178..27448+ (Gracilaria caudata M_176_S67 male)
ATGGCTGAAGGCGCCGAGTATCCCCTTCCAAGCCGTTCAAGGCGCAATAT CCTCGTTACTTCAGCTCTTCCATACGTCAATAACTACCCTCATTTGGGAA ACATAATCGGAGCAGTTTTATCCGCCGATGTTTACTCTCGATATGCTCGT CAAAGATCATTTAATGTGATATACGTTTGTGGGACTGATGAGTACGGTAC TGCGACTGAAACCAAGGCACAACAAGAAGGACTAACTCCTCGTCAGATAT GCGATAAATACCATGCACTTCATAAACAAGTTTATGCGTGGTTCGACATA AATTTTGATGTGTTTGGAAGGACAAGCACGGATGCCCATACTACCATCGT ACAATCTGTCTTTGAAAGGGTTTATGACAATGGTTATGTCACACAGGATA CAATAACACAGCTGTACTGCGAGAAGGTTTGTCATCGTTTCTTAGCTGAT CGCTATGTGAATGGTGATTGTCCCAATTGTGGATTTGATGATGCCAGGGG TGATCAGTGCGACAACTGCGGTCGTATGCTCAATCCCGCAGAGTTGTTAC GTCCAAGATGCTCTACATGTGGAAATGAACCGGTTTCGAGGTCTACGACG CATCTTTTCTTGGATTTGCCAAAATTGCAGCCTGAATTGGAAAAGTGGGT GGCAAACGCTTCTGAAAGAGGAAAATGGACAAACAATGCGCTTGCGATGA CTCGAACATGGCTGAATGACCAGCTCAAAGCTCGATGCATTACGAGAGAC CTGAAATGGGGTGTTCCTGTTCCTCTGGACGGTTTTACTGATAAAGTTTT TTATGTTTGGTTTGACGCTCCGTTAGGGTATCCTTCTATAACCGCTAAAT TATGCGGTGAAGATTGGAAGAAATGGTGGCTTCCTGATGAAGGTGAGGAC ATTAAGCTCGTGCAGTTCATGGGAAAGGATAATGTTCCATTTCATACTAT AGTGTTCCCCGGTGCCTTAATTGCTACAAACGACTCATGGACTATGTTAC ACCACATTTCAACCACAGATTACCTGAACTACGAAGACGGGAAGTTTAGC AAAAGTCGTGGTGTAGGCGTGTTTGGAAACGACGCTATCGCTTCGGGAAT TCCTTCTGAGGTTTGGAGATATTATCTGTTACTTAATCGTCCAGAAGGAT CGGATGCGGTATTCACCTGGGACGATCTCGCTGTGAAGAATAACGATGAA CTTATCAAAACGTTAGGCAACTTCATGAATCGCGTAATCACTTTTCTACA CAAGTCATTCAAGGGTGTAGTGCCTGAATTAATACCAAACGATGAAGAAG ACGAAGAGTTCACAAAGAAAGTGAACATAGAACTGAAGGAATACAAACGA CTCATGGACGAGGTAAGTTTGAAAGCTGGTTTGAAGAAAGCAATGGCAAT TGCCAGCATTGGAAACTTATATCTACAGAGAAAAGAACCTTGGAATTTGC TGAAAGAAGGAGATACTCGCACGGCAGGTAGCGCTCTTACTTACGCTGCG AATCTGGCAGTGTTAGTGACAGTAATTTTGGAGCCGTTTTTGGGAACAAA GTTTTCAGTGAAGGTATTCTCCCAACTGGGCTTGCAGCATAAAGCAGGTG AAAGCAATTTGATACCAGAGAGGTTTGAGGCTTTGCAATGGATTAAAGCG GGTATGAAAACAGGAAAACCACAGATTTTGTTCACCTCACTCACAAAAGA TCAGGTGGCAGAGTTTAGAAGAAAATTCAGTGGAGATGCTTCAAACACTG AACAGAAGGAGAAGAACGACGAAAAACGTTTCGCTCTTGACCTGAGAGTT GGAAGAATTGTGGACGTTCGTGAGCACCAGGAATCTGAACGTTTGTTTGT GGGCAAAGTGGATGTTGGAGAAGATGATGTTCGTACTGTTGTTGCTGGTT TACGTGATGTGTACACTGCTGACGAACTGAATGGAAGAAAAGTGGTATTG GTTTGTAATCTGGCAGCGGCCAATCTGGCTGGCGTCGAGTCTCAAGGAAT GATCTTGGTGGCCGAAAAGAAGAAGATTACAAAAGTATTAAGCGTGGATG AGAGCGTGTCTGTGGGCAATCGAATTGTGGCGCAGGATGTTAGTGTGGGC GATCTAGAGAAAAGGCTGGATCGAAAAGGATTTCAAACGGCCAGCAAGTT GCTACGAGTTGGGAAGAATGGAGAAATTGTGTACGATAAGAAGCACCGCC TTGTGGTGCATGGGAAGGAGCAGTTGGGAGTGAGTTCACAAGGAGTTGCG GAGGGTGGAAAAGTGAAGTAG
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Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:25178..27448+

>Gcaud1818.t1 ID=Gcaud1818.t1|Name=Gcaud1818.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2271bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:25178..27448+ (Gracilaria caudata M_176_S67 male)
ATGGCTGAAGGCGCCGAGTATCCCCTTCCAAGCCGTTCAAGGCGCAATAT
CCTCGTTACTTCAGCTCTTCCATACGTCAATAACTACCCTCATTTGGGAA
ACATAATCGGAGCAGTTTTATCCGCCGATGTTTACTCTCGATATGCTCGT
CAAAGATCATTTAATGTGATATACGTTTGTGGGACTGATGAGTACGGTAC
TGCGACTGAAACCAAGGCACAACAAGAAGGACTAACTCCTCGTCAGATAT
GCGATAAATACCATGCACTTCATAAACAAGTTTATGCGTGGTTCGACATA
AATTTTGATGTGTTTGGAAGGACAAGCACGGATGCCCATACTACCATCGT
ACAATCTGTCTTTGAAAGGGTTTATGACAATGGTTATGTCACACAGGATA
CAATAACACAGCTGTACTGCGAGAAGGTTTGTCATCGTTTCTTAGCTGAT
CGCTATGTGAATGGTGATTGTCCCAATTGTGGATTTGATGATGCCAGGGG
TGATCAGTGCGACAACTGCGGTCGTATGCTCAATCCCGCAGAGTTGTTAC
GTCCAAGATGCTCTACATGTGGAAATGAACCGGTTTCGAGGTCTACGACG
CATCTTTTCTTGGATTTGCCAAAATTGCAGCCTGAATTGGAAAAGTGGGT
GGCAAACGCTTCTGAAAGAGGAAAATGGACAAACAATGCGCTTGCGATGA
CTCGAACATGGCTGAATGACCAGCTCAAAGCTCGATGCATTACGAGAGAC
CTGAAATGGGGTGTTCCTGTTCCTCTGGACGGTTTTACTGATAAAGTTTT
TTATGTTTGGTTTGACGCTCCGTTAGGGTATCCTTCTATAACCGCTAAAT
TATGCGGTGAAGATTGGAAGAAATGGTGGCTTCCTGATGAAGGTGAGGAC
ATTAAGCTCGTGCAGTTCATGGGAAAGGATAATGTTCCATTTCATACTAT
AGTGTTCCCCGGTGCCTTAATTGCTACAAACGACTCATGGACTATGTTAC
ACCACATTTCAACCACAGATTACCTGAACTACGAAGACGGGAAGTTTAGC
AAAAGTCGTGGTGTAGGCGTGTTTGGAAACGACGCTATCGCTTCGGGAAT
TCCTTCTGAGGTTTGGAGATATTATCTGTTACTTAATCGTCCAGAAGGAT
CGGATGCGGTATTCACCTGGGACGATCTCGCTGTGAAGAATAACGATGAA
CTTATCAAAACGTTAGGCAACTTCATGAATCGCGTAATCACTTTTCTACA
CAAGTCATTCAAGGGTGTAGTGCCTGAATTAATACCAAACGATGAAGAAG
ACGAAGAGTTCACAAAGAAAGTGAACATAGAACTGAAGGAATACAAACGA
CTCATGGACGAGGTAAGTTTGAAAGCTGGTTTGAAGAAAGCAATGGCAAT
TGCCAGCATTGGAAACTTATATCTACAGAGAAAAGAACCTTGGAATTTGC
TGAAAGAAGGAGATACTCGCACGGCAGGTAGCGCTCTTACTTACGCTGCG
AATCTGGCAGTGTTAGTGACAGTAATTTTGGAGCCGTTTTTGGGAACAAA
GTTTTCAGTGAAGGTATTCTCCCAACTGGGCTTGCAGCATAAAGCAGGTG
AAAGCAATTTGATACCAGAGAGGTTTGAGGCTTTGCAATGGATTAAAGCG
GGTATGAAAACAGGAAAACCACAGATTTTGTTCACCTCACTCACAAAAGA
TCAGGTGGCAGAGTTTAGAAGAAAATTCAGTGGAGATGCTTCAAACACTG
AACAGAAGGAGAAGAACGACGAAAAACGTTTCGCTCTTGACCTGAGAGTT
GGAAGAATTGTGGACGTTCGTGAGCACCAGGAATCTGAACGTTTGTTTGT
GGGCAAAGTGGATGTTGGAGAAGATGATGTTCGTACTGTTGTTGCTGGTT
TACGTGATGTGTACACTGCTGACGAACTGAATGGAAGAAAAGTGGTATTG
GTTTGTAATCTGGCAGCGGCCAATCTGGCTGGCGTCGAGTCTCAAGGAAT
GATCTTGGTGGCCGAAAAGAAGAAGATTACAAAAGTATTAAGCGTGGATG
AGAGCGTGTCTGTGGGCAATCGAATTGTGGCGCAGGATGTTAGTGTGGGC
GATCTAGAGAAAAGGCTGGATCGAAAAGGATTTCAAACGGCCAGCAAGTT
GCTACGAGTTGGGAAGAATGGAGAAATTGTGTACGATAAGAAGCACCGCC
TTGTGGTGCATGGGAAGGAGCAGTTGGGAGTGAGTTCACAAGGAGTTGCG
GAGGGTGGAAAAGTGAAGTAG
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